MetaAll: integrative bioinformatics workflow for analysing clinical metagenomic data

Abstract Over the past decade, there have been many improvements in the field of metagenomics, including sequencing technologies, advances in bioinformatics and the development of reference databases, but a one-size-fits-all sequencing and bioinformatics pipeline does not yet seem achievable. In thi...

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Bibliographic Details
Published in:	Briefings in bioinformatics Vol. 25; no. 6
Main Authors:	Bosilj, Martin, Suljič, Alen, Zakotnik, Samo, Slunečko, Jan, Kogoj, Rok, Korva, Misa
Format:	Journal Article
Language:	English
Published:	England Oxford University Press 23.09.2024 Oxford Publishing Limited (England)
Subjects:	Bioinformatics Computational Biology - methods COVID-19 - diagnosis COVID-19 - virology Datasets Humans Influenza A Klebsiella Metagenome Metagenomics Metagenomics - methods Pathogens Problem Solving Protocol Rhinovirus SARS-CoV-2 - genetics Severe acute respiratory syndrome coronavirus 2 Software Viral diseases Workflow long reads short PE reads clinical metagenomics pathogen detection bioinformatics workflow
ISSN:	1467-5463, 1477-4054, 1477-4054
Online Access:	Get full text
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