A genome-wide association study identifies nucleotide variants at SIGLEC5 and DEFA1A3 as risk loci for periodontitis

Periodontitis is one of the most common inflammatory diseases, with a prevalence of 11% worldwide for the severe forms and an estimated heritability of 50%. The disease is characterized by destruction of the alveolar bone due to an aberrant host inflammatory response to a dysbiotic oral microbiome....

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Vydáno v:Human molecular genetics Ročník 26; číslo 13; s. 2577
Hlavní autoři: Munz, Matthias, Willenborg, Christina, Richter, Gesa M, Jockel-Schneider, Yvonne, Graetz, Christian, Staufenbiel, Ingmar, Wellmann, Jürgen, Berger, Klaus, Krone, Bastian, Hoffmann, Per, van der Velde, Nathalie, Uitterlinden, André G, de Groot, Lisette C P G M, Sawalha, Amr H, Direskeneli, Haner, Saruhan-Direskeneli, Güher, Guzeldemir-Akcakanat, Esra, Keceli, Huseyin Gencay, Laudes, Matthias, Noack, Barbara, Teumer, Alexander, Holtfreter, Birte, Kocher, Thomas, Eickholz, Peter, Meyle, Jörg, Doerfer, Christof, Bruckmann, Corinna, Lieb, Wolfgang, Franke, Andre, Schreiber, Stefan, Nohutcu, Rahime M, Erdmann, Jeanette, Loos, Bruno G, Jepsen, Soeren, Dommisch, Henrik, Schaefer, Arne S
Médium: Journal Article
Jazyk:angličtina
Vydáno: England 01.07.2017
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ISSN:1460-2083, 1460-2083
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Abstract Periodontitis is one of the most common inflammatory diseases, with a prevalence of 11% worldwide for the severe forms and an estimated heritability of 50%. The disease is characterized by destruction of the alveolar bone due to an aberrant host inflammatory response to a dysbiotic oral microbiome. Previous genome-wide association studies (GWAS) have reported several suggestive susceptibility loci. Here, we conducted a GWAS using a German and Dutch case-control sample of aggressive periodontitis (AgP, 896 cases, 7,104 controls), a rare but highly severe and early-onset form of periodontitis, validated the associations in a German sample of severe forms of the more moderate phenotype chronic periodontitis (CP) (993 cases, 1,419 controls). Positive findings were replicated in a Turkish sample of AgP (223 cases, 564 controls). A locus at SIGLEC5 (sialic acid binding Ig-like lectin 5) and a chromosomal region downstream of the DEFA1A3 locus (defensin alpha 1-3) showed association with both disease phenotypes and were associated with periodontitis at a genome-wide significance level in the pooled samples, with P = 1.09E-08 (rs4284742,-G; OR = 1.34, 95% CI = 1.21-1.48) and P = 5.48E-10 (rs2738058,-T; OR = 1.28, 95% CI = 1.18-1.38), respectively. SIGLEC5 is expressed in various myeloid immune cells and classified as an inhibitory receptor with the potential to mediate tyrosine phosphatases SHP-1/-2 dependent signaling. Alpha defensins are antimicrobial peptides with expression in neutrophils and mucosal surfaces and a role in phagocyte-mediated host defense. This study identifies the first shared genetic risk loci of AgP and CP with genome-wide significance and highlights the role of innate and adaptive immunity in the etiology of periodontitis.
AbstractList Periodontitis is one of the most common inflammatory diseases, with a prevalence of 11% worldwide for the severe forms and an estimated heritability of 50%. The disease is characterized by destruction of the alveolar bone due to an aberrant host inflammatory response to a dysbiotic oral microbiome. Previous genome-wide association studies (GWAS) have reported several suggestive susceptibility loci. Here, we conducted a GWAS using a German and Dutch case-control sample of aggressive periodontitis (AgP, 896 cases, 7,104 controls), a rare but highly severe and early-onset form of periodontitis, validated the associations in a German sample of severe forms of the more moderate phenotype chronic periodontitis (CP) (993 cases, 1,419 controls). Positive findings were replicated in a Turkish sample of AgP (223 cases, 564 controls). A locus at SIGLEC5 (sialic acid binding Ig-like lectin 5) and a chromosomal region downstream of the DEFA1A3 locus (defensin alpha 1-3) showed association with both disease phenotypes and were associated with periodontitis at a genome-wide significance level in the pooled samples, with P = 1.09E-08 (rs4284742,-G; OR = 1.34, 95% CI = 1.21-1.48) and P = 5.48E-10 (rs2738058,-T; OR = 1.28, 95% CI = 1.18-1.38), respectively. SIGLEC5 is expressed in various myeloid immune cells and classified as an inhibitory receptor with the potential to mediate tyrosine phosphatases SHP-1/-2 dependent signaling. Alpha defensins are antimicrobial peptides with expression in neutrophils and mucosal surfaces and a role in phagocyte-mediated host defense. This study identifies the first shared genetic risk loci of AgP and CP with genome-wide significance and highlights the role of innate and adaptive immunity in the etiology of periodontitis.Periodontitis is one of the most common inflammatory diseases, with a prevalence of 11% worldwide for the severe forms and an estimated heritability of 50%. The disease is characterized by destruction of the alveolar bone due to an aberrant host inflammatory response to a dysbiotic oral microbiome. Previous genome-wide association studies (GWAS) have reported several suggestive susceptibility loci. Here, we conducted a GWAS using a German and Dutch case-control sample of aggressive periodontitis (AgP, 896 cases, 7,104 controls), a rare but highly severe and early-onset form of periodontitis, validated the associations in a German sample of severe forms of the more moderate phenotype chronic periodontitis (CP) (993 cases, 1,419 controls). Positive findings were replicated in a Turkish sample of AgP (223 cases, 564 controls). A locus at SIGLEC5 (sialic acid binding Ig-like lectin 5) and a chromosomal region downstream of the DEFA1A3 locus (defensin alpha 1-3) showed association with both disease phenotypes and were associated with periodontitis at a genome-wide significance level in the pooled samples, with P = 1.09E-08 (rs4284742,-G; OR = 1.34, 95% CI = 1.21-1.48) and P = 5.48E-10 (rs2738058,-T; OR = 1.28, 95% CI = 1.18-1.38), respectively. SIGLEC5 is expressed in various myeloid immune cells and classified as an inhibitory receptor with the potential to mediate tyrosine phosphatases SHP-1/-2 dependent signaling. Alpha defensins are antimicrobial peptides with expression in neutrophils and mucosal surfaces and a role in phagocyte-mediated host defense. This study identifies the first shared genetic risk loci of AgP and CP with genome-wide significance and highlights the role of innate and adaptive immunity in the etiology of periodontitis.
Periodontitis is one of the most common inflammatory diseases, with a prevalence of 11% worldwide for the severe forms and an estimated heritability of 50%. The disease is characterized by destruction of the alveolar bone due to an aberrant host inflammatory response to a dysbiotic oral microbiome. Previous genome-wide association studies (GWAS) have reported several suggestive susceptibility loci. Here, we conducted a GWAS using a German and Dutch case-control sample of aggressive periodontitis (AgP, 896 cases, 7,104 controls), a rare but highly severe and early-onset form of periodontitis, validated the associations in a German sample of severe forms of the more moderate phenotype chronic periodontitis (CP) (993 cases, 1,419 controls). Positive findings were replicated in a Turkish sample of AgP (223 cases, 564 controls). A locus at SIGLEC5 (sialic acid binding Ig-like lectin 5) and a chromosomal region downstream of the DEFA1A3 locus (defensin alpha 1-3) showed association with both disease phenotypes and were associated with periodontitis at a genome-wide significance level in the pooled samples, with P = 1.09E-08 (rs4284742,-G; OR = 1.34, 95% CI = 1.21-1.48) and P = 5.48E-10 (rs2738058,-T; OR = 1.28, 95% CI = 1.18-1.38), respectively. SIGLEC5 is expressed in various myeloid immune cells and classified as an inhibitory receptor with the potential to mediate tyrosine phosphatases SHP-1/-2 dependent signaling. Alpha defensins are antimicrobial peptides with expression in neutrophils and mucosal surfaces and a role in phagocyte-mediated host defense. This study identifies the first shared genetic risk loci of AgP and CP with genome-wide significance and highlights the role of innate and adaptive immunity in the etiology of periodontitis.
Author Richter, Gesa M
van der Velde, Nathalie
Jepsen, Soeren
Uitterlinden, André G
Graetz, Christian
Schaefer, Arne S
Berger, Klaus
Direskeneli, Haner
Dommisch, Henrik
Wellmann, Jürgen
Laudes, Matthias
Schreiber, Stefan
Nohutcu, Rahime M
Sawalha, Amr H
Loos, Bruno G
Bruckmann, Corinna
Saruhan-Direskeneli, Güher
Erdmann, Jeanette
de Groot, Lisette C P G M
Doerfer, Christof
Holtfreter, Birte
Meyle, Jörg
Guzeldemir-Akcakanat, Esra
Keceli, Huseyin Gencay
Franke, Andre
Lieb, Wolfgang
Eickholz, Peter
Krone, Bastian
Jockel-Schneider, Yvonne
Noack, Barbara
Teumer, Alexander
Staufenbiel, Ingmar
Kocher, Thomas
Hoffmann, Per
Willenborg, Christina
Munz, Matthias
Author_xml – sequence: 1
  givenname: Matthias
  surname: Munz
  fullname: Munz, Matthias
  organization: Institute for Integrative and Experimental Genomics, University Medical Center Schleswig-Holstein - Campus Lübeck, Germany
– sequence: 2
  givenname: Christina
  surname: Willenborg
  fullname: Willenborg, Christina
  organization: Institute for Integrative and Experimental Genomics, University Medical Center Schleswig-Holstein - Campus Lübeck, Germany
– sequence: 3
  givenname: Gesa M
  surname: Richter
  fullname: Richter, Gesa M
  organization: Department of Periodontology and Synoptic Dentistry, Institute of Dental, Oral and Maxillary Medicine, Charité - University Medicine Berlin, Germany
– sequence: 4
  givenname: Yvonne
  surname: Jockel-Schneider
  fullname: Jockel-Schneider, Yvonne
  organization: Department of Periodontology, Clinic of Preventive Dentistry and Periodontology, University Medical Center of the Julius-Maximilians-University, Würzburg, Germany
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  organization: Department of Operative Dentistry and Periodontology, University Medical Center Schleswig-Holstein, Campus Kiel, Germany
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  givenname: Ingmar
  surname: Staufenbiel
  fullname: Staufenbiel, Ingmar
  organization: Department of Conservative Dentistry, Periodontology and Preventive Dentistry, Hannover Medical School, Hannover, Germany
– sequence: 7
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  surname: Wellmann
  fullname: Wellmann, Jürgen
  organization: Institute of Epidemiology and Social Medicine, University Münster, Germany
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  surname: Berger
  fullname: Berger, Klaus
  organization: Institute of Epidemiology and Social Medicine, University Münster, Germany
– sequence: 9
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  surname: Krone
  fullname: Krone, Bastian
  organization: Institute of Medical Informatics, Biometry and Epidemiology, University Clinic Essen, Germany
– sequence: 10
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  surname: Hoffmann
  fullname: Hoffmann, Per
  organization: Human Genomics Research Group, Department of Biomedicine, University Hospital of Basel, Switzerland
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  organization: Department of Internal Medicine Section of Geriatrics, Amsterdam Medical Center, Amsterdam, The Netherlands
– sequence: 12
  givenname: André G
  surname: Uitterlinden
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  organization: Department of Internal Medicine, Erasmus Medical Center, Rotterdam, The Netherlands
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  givenname: Lisette C P G M
  surname: de Groot
  fullname: de Groot, Lisette C P G M
  organization: Department of Epidemiology and the EMGO Institute of Health and Care Research, VU University Medical Center, Amsterdam, The Netherlands
– sequence: 14
  givenname: Amr H
  surname: Sawalha
  fullname: Sawalha, Amr H
  organization: Center for Computational Medicine and Bioinformatics, University of Michigan Medical School, USA
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  organization: Division of Rheumatology, Marmara University, School of Medicine, Istanbul, Turkey
– sequence: 16
  givenname: Güher
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  fullname: Saruhan-Direskeneli, Güher
  organization: Department of Physiology, Istanbul Medical Faculty, Istanbul University, Istanbul, Turkey
– sequence: 17
  givenname: Esra
  surname: Guzeldemir-Akcakanat
  fullname: Guzeldemir-Akcakanat, Esra
  organization: Department of Periodontology, Faculty of Dentistry, Kocaeli University, Turkey
– sequence: 18
  givenname: Huseyin Gencay
  surname: Keceli
  fullname: Keceli, Huseyin Gencay
  organization: Department of Periodontology, Faculty of Dentistry, Hacettepe University, Sihhiye, Ankara, Turkey
– sequence: 19
  givenname: Matthias
  surname: Laudes
  fullname: Laudes, Matthias
  organization: Clinic of Internal Medicine, University Clinic Schleswig-Holstein, Kiel, Germany
– sequence: 20
  givenname: Barbara
  surname: Noack
  fullname: Noack, Barbara
  organization: Clinic of Conservational Dentistry, Center of Dental, Oral and Maxillary Medicine, University Medical Center Carl-Gustav-Carus, Technical University Dresden, Germany
– sequence: 21
  givenname: Alexander
  surname: Teumer
  fullname: Teumer, Alexander
  organization: Institute for Community Medicine, University Medicine Greifswald, Germany
– sequence: 22
  givenname: Birte
  surname: Holtfreter
  fullname: Holtfreter, Birte
  organization: Unit of Periodontology, Department of Restorative Dentistry, Periodontology, Endodontology, Preventive Dentistry and Pedodontics, Dental School, University Medicine Greifswald, Germany
– sequence: 23
  givenname: Thomas
  surname: Kocher
  fullname: Kocher, Thomas
  organization: Unit of Periodontology, Department of Restorative Dentistry, Periodontology, Endodontology, Preventive Dentistry and Pedodontics, Dental School, University Medicine Greifswald, Germany
– sequence: 24
  givenname: Peter
  surname: Eickholz
  fullname: Eickholz, Peter
  organization: Department of Periodontology, Johann Wolfgang Goethe-University, Frankfurt am Main, Germany
– sequence: 25
  givenname: Jörg
  surname: Meyle
  fullname: Meyle, Jörg
  organization: Department of Periodontology, University Medical Center Giessen and Marburg, Germany
– sequence: 26
  givenname: Christof
  surname: Doerfer
  fullname: Doerfer, Christof
  organization: Department of Operative Dentistry and Periodontology, University Medical Center Schleswig-Holstein, Campus Kiel, Germany
– sequence: 27
  givenname: Corinna
  surname: Bruckmann
  fullname: Bruckmann, Corinna
  organization: Department of Conservative Dentistry and Periodontology, Medical University Vienna, School of Dentistry, Vienna, Austria
– sequence: 28
  givenname: Wolfgang
  surname: Lieb
  fullname: Lieb, Wolfgang
  organization: Institute of Epidemiology, Biobank PopGen, Christian-Albrechts-University, Kiel, Germany
– sequence: 29
  givenname: Andre
  surname: Franke
  fullname: Franke, Andre
  organization: Institute of Clinical Molecular Biology, Christian-Albrechts-University, Kiel, Germany
– sequence: 30
  givenname: Stefan
  surname: Schreiber
  fullname: Schreiber, Stefan
  organization: Institute of Clinical Molecular Biology, Christian-Albrechts-University, Kiel, Germany
– sequence: 31
  givenname: Rahime M
  surname: Nohutcu
  fullname: Nohutcu, Rahime M
  organization: Department of Periodontology, Faculty of Dentistry, Kocaeli University, Turkey
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  givenname: Jeanette
  surname: Erdmann
  fullname: Erdmann, Jeanette
  organization: Institute for Integrative and Experimental Genomics, University Medical Center Schleswig-Holstein - Campus Lübeck, Germany
– sequence: 33
  givenname: Bruno G
  surname: Loos
  fullname: Loos, Bruno G
  organization: Department of Periodontology and Oral Biochemistry, Academic Centre for Dentistry Amsterdam (ACTA), University of Amsterdam and VU University Amsterdam, The Netherlands
– sequence: 34
  givenname: Soeren
  surname: Jepsen
  fullname: Jepsen, Soeren
  organization: Department of Periodontology, Operative and Preventive Dentistry, University of Bonn, Bonn, Germany
– sequence: 35
  givenname: Henrik
  surname: Dommisch
  fullname: Dommisch, Henrik
  organization: Department of Periodontology and Synoptic Dentistry, Institute of Dental, Oral and Maxillary Medicine, Charité - University Medicine Berlin, Germany
– sequence: 36
  givenname: Arne S
  surname: Schaefer
  fullname: Schaefer, Arne S
  organization: Department of Periodontology and Synoptic Dentistry, Institute of Dental, Oral and Maxillary Medicine, Charité - University Medicine Berlin, Germany
BackLink https://www.ncbi.nlm.nih.gov/pubmed/28449029$$D View this record in MEDLINE/PubMed
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PublicationTitle Human molecular genetics
PublicationTitleAlternate Hum Mol Genet
PublicationYear 2017
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Snippet Periodontitis is one of the most common inflammatory diseases, with a prevalence of 11% worldwide for the severe forms and an estimated heritability of 50%....
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SubjectTerms Adult
Aggressive Periodontitis - genetics
alpha-Defensins - genetics
alpha-Defensins - metabolism
Antigens, CD - genetics
Antigens, CD - metabolism
Antigens, Differentiation, Myelomonocytic - genetics
Antigens, Differentiation, Myelomonocytic - metabolism
Case-Control Studies
Chronic Periodontitis - genetics
Female
Genetic Loci
Genetic Predisposition to Disease
Genome-Wide Association Study
Genotype
Humans
Lectins - genetics
Lectins - metabolism
Male
Middle Aged
Nucleotides
Peptides, Cyclic - genetics
Peptides, Cyclic - metabolism
Phenotype
Polymorphism, Single Nucleotide - genetics
Risk Factors
Turkey
Title A genome-wide association study identifies nucleotide variants at SIGLEC5 and DEFA1A3 as risk loci for periodontitis
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