Development and validation of a genome-wide InDel marker set discriminating the alleles between the BB-genome Oryza species and rice (O. sativa)
Wild relatives of cultivated rice (Oryza sativa) belonging to the genus Oryza are regarded as ‘genetic reservoirs’ for rice improvement. Their genes are transferable to cultivated rice through crossing and they have been contributing significantly to rice variety improvement by introgression of thei...
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| Vydané v: | Current plant biology Ročník 34; s. 100285 |
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| Médium: | Journal Article |
| Jazyk: | English |
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Elsevier B.V
01.06.2023
Elsevier |
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| ISSN: | 2214-6628, 2214-6628 |
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| Abstract | Wild relatives of cultivated rice (Oryza sativa) belonging to the genus Oryza are regarded as ‘genetic reservoirs’ for rice improvement. Their genes are transferable to cultivated rice through crossing and they have been contributing significantly to rice variety improvement by introgression of their diverse valuable traits, especially biotic stress resistance. Moreover, active use of wild rice resources might be one of the ideal solutions to seek novel or superior alleles/genes to cope with climate change and stable high-yield rice production. DNA markers are essential tools for genetic analysis and breeding. However, to date, there are no suitable DNA marker sets for BB-genome species (O. punctata). In this study, we developed a genome genome-wide InDel marker set evenly distributed (∼2 Mb intervals) across the 12 chromosomes for BB-genome species. The markers were validated by PCR-agarose gel analysis with BB-genome containing species: four accessions each of O. punctata (BB) and O. minuta (BBCC). Out of the 191 InDel markers designed, 184 (96.3%) and 138 (72.2%) were able to differentiate the alleles between O. sativa and O. punctata and between O. sativa and O. minuta respectively. The same marker sets were also tested in other genome types species (CC, CCDD, EE, FF, GG, HHJJ, and KKLL) and one accession of Leersia perrieri (a sister genus to Oryza). The number of polymorphic markers (O. sativa vs other genome types) was drastically reduced in other genome types. In contrast, the number of markers showing no PCR amplification increased, especially in FF, GG, HHJJ, and KKLL species. This suggests that the development of genome type-specific marker sets would be more efficient rather than testing random InDel markers. The newly developed InDel markers maybe be useful for the identification of valuable genetic factors from the BB or BBCC-genome species and also for transferring the identified genes/QTLs into elite variety backgrounds. |
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| AbstractList | Wild relatives of cultivated rice (Oryza sativa) belonging to the genus Oryza are regarded as 'genetic reservoirs' for rice improvement. Their genes are transferable to cultivated rice through crossing and they have been contributing significantly to rice variety improvement by introgression of their diverse valuable traits, especially biotic stress resistance. Moreover, active use of wild rice resources might be one of the ideal solutions to seek novel or superior alleles/genes to cope with climate change and stable high-yield rice production. DNA markers are essential tools for genetic analysis and breeding. However, to date, there are no suitable DNA marker sets for BB-genome species (O. punctata). In this study, we developed a genome genome-wide InDel marker set evenly distributed (∼2 Mb intervals) across the 12 chromosomes for BB-genome species. The markers were validated by PCR-agarose gel analysis with BB-genome containing species: four accessions each of O. punctata (BB) and O. minuta (BBCC). Out of the 191 InDel markers designed, 184 (96.3%) and 138 (72.2%) were able to differentiate the alleles between O. sativa and O. punctata and between O. sativa and O. minuta respectively. The same marker sets were also tested in other genome types species (CC, CCDD, EE, FF, GG, HHJJ, and KKLL) and one accession of Leersia perrieri (a sister genus to Oryza). The number of polymorphic markers (O. sativa vs other genome types) was drastically reduced in other genome types. In contrast, the number of markers showing no PCR amplification increased, especially in FF, GG, HHJJ, and KKLL species. This suggests that the development of genome type-specific marker sets would be more efficient rather than testing random InDel markers. The newly developed InDel markers maybe be useful for the identification of valuable genetic factors from the BB or BBCC-genome species and also for transferring the identified genes/QTLs into elite variety backgrounds. Wild relatives of cultivated rice (Oryza sativa) belonging to the genus Oryza are regarded as ‘genetic reservoirs’ for rice improvement. Their genes are transferable to cultivated rice through crossing and they have been contributing significantly to rice variety improvement by introgression of their diverse valuable traits, especially biotic stress resistance. Moreover, active use of wild rice resources might be one of the ideal solutions to seek novel or superior alleles/genes to cope with climate change and stable high-yield rice production. DNA markers are essential tools for genetic analysis and breeding. However, to date, there are no suitable DNA marker sets for BB-genome species (O. punctata). In this study, we developed a genome genome-wide InDel marker set evenly distributed (∼2 Mb intervals) across the 12 chromosomes for BB-genome species. The markers were validated by PCR-agarose gel analysis with BB-genome containing species: four accessions each of O. punctata (BB) and O. minuta (BBCC). Out of the 191 InDel markers designed, 184 (96.3%) and 138 (72.2%) were able to differentiate the alleles between O. sativa and O. punctata and between O. sativa and O. minuta respectively. The same marker sets were also tested in other genome types species (CC, CCDD, EE, FF, GG, HHJJ, and KKLL) and one accession of Leersia perrieri (a sister genus to Oryza). The number of polymorphic markers (O. sativa vs other genome types) was drastically reduced in other genome types. In contrast, the number of markers showing no PCR amplification increased, especially in FF, GG, HHJJ, and KKLL species. This suggests that the development of genome type-specific marker sets would be more efficient rather than testing random InDel markers. The newly developed InDel markers maybe be useful for the identification of valuable genetic factors from the BB or BBCC-genome species and also for transferring the identified genes/QTLs into elite variety backgrounds. |
| ArticleNumber | 100285 |
| Author | Ahn, Eok-Keun Hechanova, Sherry Lou Malabanan-Bauan, Katrina B. Hernandez, Jose E. Choi, Il-Ryong Jena, Kshirod K. Kim, Sung-Ryul Li, Charng-Pei |
| Author_xml | – sequence: 1 givenname: Katrina B. surname: Malabanan-Bauan fullname: Malabanan-Bauan, Katrina B. organization: Rice Breeding Innovation Platform, International Rice Research Institute (IRRI), Philippines – sequence: 2 givenname: Sherry Lou surname: Hechanova fullname: Hechanova, Sherry Lou organization: Rice Breeding Innovation Platform, International Rice Research Institute (IRRI), Philippines – sequence: 3 givenname: Eok-Keun surname: Ahn fullname: Ahn, Eok-Keun organization: National Institute of Crop Science, Rural Development Administration (RDA), Republic of Korea – sequence: 4 givenname: Charng-Pei surname: Li fullname: Li, Charng-Pei organization: Taiwan Agricultural Research Institute (TARI), Council of Agriculture, Taiwan – sequence: 5 givenname: Il-Ryong surname: Choi fullname: Choi, Il-Ryong organization: Rice Breeding Innovation Platform, International Rice Research Institute (IRRI), Philippines – sequence: 6 givenname: Jose E. surname: Hernandez fullname: Hernandez, Jose E. organization: Institute of Crop Science (ICropS), University of the Philippines Los Baños (UPLB), Philippines – sequence: 7 givenname: Kshirod K. surname: Jena fullname: Jena, Kshirod K. organization: School of Biotechnology, KIIT Deemed University, Bhubaneswar 751024, Odisha, India – sequence: 8 givenname: Sung-Ryul orcidid: 0000-0003-1223-2442 surname: Kim fullname: Kim, Sung-Ryul email: s.r.kim@irri.org organization: Rice Breeding Innovation Platform, International Rice Research Institute (IRRI), Philippines |
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| Cites_doi | 10.9787/PBB.2016.4.1.99 10.1038/s41576-018-0024-z 10.1007/s00122-016-2745-8 10.1093/jxb/eru474 10.1186/s12284-021-00521-9 10.1038/s41893-022-00997-3 10.1007/s10722-016-0368-1 10.1038/s41598-021-88533-9 10.1270/jsbbs.60.518 10.1270/jsbbs.18045 10.1038/s41588-018-0040-0 10.3390/agronomy12040808 |
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| Keywords | BB genome Oryza minuta Oryza genus Wild rice species Oryza punctata InDel marker |
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| References | Kim, An, Yang, Miao, Qin, Hu, Du, Zhu, He, Chen (bib1) 2022; 12 Prahalada, Marathi, Vinarao, Kim, Diocton, Ramos, Jena, Mapping (bib6) 2021; 14 Li, Zheng (bib3) 2013 Jena, Ballesfin, Vinarao (bib12) 2016; 129 Hechanova, Bhattarai, Simon, Clave, Karunarathne, Ahn, Li, Lee, Kohli, Hamilton, Hernandez, Gregorio, Jena, An, Kim (bib13) 2021; 11 Stein, Yu, Copetti, Zwickl, Zhang, Zhang, Chougule, Gao, Iwata, Goiocoechea, Wei, Wang, Liao, Wang, Jacquemin, Becker, Kudrna, Zhang, Londono, Song, Lee, Sanchez, Zuccolo, Ammiraju, Talag, Danowitz, Rivera, Gschwend, Noutsos, Wu, Kao, Zeng, Wei, Zhao, Feng, El Baidouri, Carpentier, Lasserre, Corke, d. da Rosa Farias, da Maia, dos Santos, Nyberg, McNally, Mauleon, Alexandrov, Schmutz, Flowers, Fan, Weigel, Jena, Wicker, Chen, Han, Henry, Hsing, Kurata, de Oliveira, Panaud, Jackson, Machado, Sanderson, Long, Wing (bib9) 2018 Chin, Lee, Jiang, Koh, Thomson (bib17) 2017; 64 Hirabayashi, Sasaki, Kambe, Gannaban, Miras, Mendioro, Simon, Lumanglas, Fujita, Takemoto-Kuno, Takeuchi, Kaji, Kondo, Kobayashi, Ogawa, Ando, Jagadish, Ishimaru (bib5) 2015; 66 Sanchez, Wing, Brar (bib4) 2013 Ballesfin, Vinarao, Sapin, Kim, Jena (bib10) 2018; 68 Hall (bib14) 1999; 41 Wang, Liu, Peng, Xu, Yuan, Feng, Yu, Wang, Wei (bib16) 2014; 9 Wing, Purugganan, Zhang (bib2) 2018; 19 Jena (bib8) 2010; 60 Kim, Yang, An, Jena (bib15) 2016; 4 Zhang, Huang, Zhang, Lv, Wan, Liang, Feng, Dao, Wu, Zhang, Yang, Lian, Huang, Shao, Zhang, Qin, Tao, Crews, Sacks, Lyu, Wade, Hu (bib7) 2023; 6 Banaticla-Hilario, Sajise (bib11) 2022 Sanchez (10.1016/j.cpb.2023.100285_bib4) 2013 Banaticla-Hilario (10.1016/j.cpb.2023.100285_bib11) 2022 Prahalada (10.1016/j.cpb.2023.100285_bib6) 2021; 14 Jena (10.1016/j.cpb.2023.100285_bib12) 2016; 129 Li (10.1016/j.cpb.2023.100285_bib3) 2013 Wing (10.1016/j.cpb.2023.100285_bib2) 2018; 19 Hirabayashi (10.1016/j.cpb.2023.100285_bib5) 2015; 66 Jena (10.1016/j.cpb.2023.100285_bib8) 2010; 60 Kim (10.1016/j.cpb.2023.100285_bib15) 2016; 4 Stein (10.1016/j.cpb.2023.100285_bib9) 2018 Chin (10.1016/j.cpb.2023.100285_bib17) 2017; 64 Hechanova (10.1016/j.cpb.2023.100285_bib13) 2021; 11 Kim (10.1016/j.cpb.2023.100285_bib1) 2022; 12 Wang (10.1016/j.cpb.2023.100285_bib16) 2014; 9 Hall (10.1016/j.cpb.2023.100285_bib14) 1999; 41 Ballesfin (10.1016/j.cpb.2023.100285_bib10) 2018; 68 Zhang (10.1016/j.cpb.2023.100285_bib7) 2023; 6 |
| References_xml | – start-page: 349 year: 2013 end-page: 361 ident: bib3 article-title: Utilization of exotic germplasm publication-title: Genetics and Genomics of Rice: Crops and Models – volume: 129 start-page: 1873 year: 2016 end-page: 1886 ident: bib12 article-title: Development of publication-title: Theor. Appl. Genet. – volume: 9 year: 2014 ident: bib16 article-title: Development of novel microsatellite markers for the BBCC publication-title: PLoS One – volume: 12 start-page: 808 year: 2022 ident: bib1 article-title: Molecular mapping of a new brown planthopper resistance gene Bph43 in rice ( publication-title: Agronomy – volume: 66 start-page: 1227 year: 2015 end-page: 1236 ident: bib5 article-title: qEMF3, a novel QTL for the early-morning flowering trait from wild rice, publication-title: J. Exp. Bot. – year: 2022 ident: bib11 article-title: Recent developments in wild rice conservation, research, and use publication-title: Plant Genetic Resources, Inventory, Collection and Conservation – volume: 4 start-page: 99 year: 2016 end-page: 106 ident: bib15 article-title: A simple DNA preparation method for high quality polymerase chain reaction in rice publication-title: Plant Breed. Biotechnol. – volume: 60 start-page: 518 year: 2010 end-page: 523 ident: bib8 article-title: The species of the genus publication-title: Breed. Sci. – volume: 64 start-page: 405 year: 2017 end-page: 418 ident: bib17 article-title: Characterization of publication-title: Genet. Resour. Crop Evol. – volume: 19 start-page: 505 year: 2018 end-page: 517 ident: bib2 article-title: The rice genome revolution: from an ancient grain to Green Super Rice publication-title: Nat. Rev. Genet. – start-page: 9 year: 2013 end-page: 25 ident: bib4 article-title: The wild relative of rice: genomes and genomics publication-title: Genetics and Genomics of Rice – volume: 6 start-page: 28 year: 2023 end-page: 38 ident: bib7 article-title: Sustained productivity and agronomic potential of perennial rice publication-title: Nat. Sustain. – volume: 11 start-page: 8962 year: 2021 ident: bib13 article-title: Development of a genome-wide InDel marker set for allele discrimination between rice ( publication-title: Sci. Rep. – volume: 14 start-page: 80 year: 2021 ident: bib6 article-title: of a novel genomic region associated with high out-crossing rate derived from publication-title: Rice – volume: 41 start-page: 95 year: 1999 end-page: 98 ident: bib14 article-title: BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT publication-title: Nucl. Acids Symp. Ser. – start-page: 285 year: 2018 end-page: 296 ident: bib9 article-title: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza publication-title: Nat. Genet. – volume: 68 start-page: 474 year: 2018 end-page: 480 ident: bib10 article-title: Development of an intergeneric hybrid between publication-title: Breed. Sci. – volume: 9 issue: 3 year: 2014 ident: 10.1016/j.cpb.2023.100285_bib16 article-title: Development of novel microsatellite markers for the BBCC Oryza genome (Poaceae) using high-throughput sequencing technology publication-title: PLoS One – volume: 41 start-page: 95 year: 1999 ident: 10.1016/j.cpb.2023.100285_bib14 article-title: BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT publication-title: Nucl. Acids Symp. Ser. – volume: 4 start-page: 99 year: 2016 ident: 10.1016/j.cpb.2023.100285_bib15 article-title: A simple DNA preparation method for high quality polymerase chain reaction in rice publication-title: Plant Breed. Biotechnol. doi: 10.9787/PBB.2016.4.1.99 – volume: 19 start-page: 505 year: 2018 ident: 10.1016/j.cpb.2023.100285_bib2 article-title: The rice genome revolution: from an ancient grain to Green Super Rice publication-title: Nat. Rev. Genet. doi: 10.1038/s41576-018-0024-z – volume: 129 start-page: 1873 issue: 10 year: 2016 ident: 10.1016/j.cpb.2023.100285_bib12 article-title: Development of Oryza sativa L. by Oryza punctata Kotschy ex Steud. monosomic addition lines with high value traits by interspecific hybridization publication-title: Theor. Appl. Genet. doi: 10.1007/s00122-016-2745-8 – volume: 66 start-page: 1227 issue: 5 year: 2015 ident: 10.1016/j.cpb.2023.100285_bib5 article-title: qEMF3, a novel QTL for the early-morning flowering trait from wild rice, Oryza officinalis, to mitigate heat stress damage at flowering in rice, O. sativa publication-title: J. Exp. Bot. doi: 10.1093/jxb/eru474 – volume: 14 start-page: 80 year: 2021 ident: 10.1016/j.cpb.2023.100285_bib6 article-title: of a novel genomic region associated with high out-crossing rate derived from Oryza longistaminata and development of new CMS lines in rice O. sativa L. publication-title: Rice doi: 10.1186/s12284-021-00521-9 – volume: 6 start-page: 28 year: 2023 ident: 10.1016/j.cpb.2023.100285_bib7 article-title: Sustained productivity and agronomic potential of perennial rice publication-title: Nat. Sustain. doi: 10.1038/s41893-022-00997-3 – volume: 64 start-page: 405 year: 2017 ident: 10.1016/j.cpb.2023.100285_bib17 article-title: Characterization of indica–japonica subspecies-specific InDel loci in wild relatives of rice (Oryza sativa L. subsp. indica Kato and subsp. japonica Kato) publication-title: Genet. Resour. Crop Evol. doi: 10.1007/s10722-016-0368-1 – start-page: 9 year: 2013 ident: 10.1016/j.cpb.2023.100285_bib4 article-title: The wild relative of rice: genomes and genomics – volume: 11 start-page: 8962 year: 2021 ident: 10.1016/j.cpb.2023.100285_bib13 article-title: Development of a genome-wide InDel marker set for allele discrimination between rice (Oryza sativa) and the other seven AA-genome Oryza species publication-title: Sci. Rep. doi: 10.1038/s41598-021-88533-9 – volume: 60 start-page: 518 year: 2010 ident: 10.1016/j.cpb.2023.100285_bib8 article-title: The species of the genus Oryza and transfer of useful genes from wild species into cultivated rice O. sativa publication-title: Breed. Sci. doi: 10.1270/jsbbs.60.518 – volume: 68 start-page: 474 year: 2018 ident: 10.1016/j.cpb.2023.100285_bib10 article-title: Development of an intergeneric hybrid between Oryza sativa L. and Leersia perrieri (A. Camus) Launert publication-title: Breed. Sci. doi: 10.1270/jsbbs.18045 – start-page: 349 year: 2013 ident: 10.1016/j.cpb.2023.100285_bib3 article-title: Utilization of exotic germplasm – start-page: 285 year: 2018 ident: 10.1016/j.cpb.2023.100285_bib9 article-title: Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza publication-title: Nat. Genet. doi: 10.1038/s41588-018-0040-0 – year: 2022 ident: 10.1016/j.cpb.2023.100285_bib11 article-title: Recent developments in wild rice conservation, research, and use – volume: 12 start-page: 808 year: 2022 ident: 10.1016/j.cpb.2023.100285_bib1 article-title: Molecular mapping of a new brown planthopper resistance gene Bph43 in rice (Oryza sativa L.) publication-title: Agronomy doi: 10.3390/agronomy12040808 |
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| SubjectTerms | BB genome biotic stress climate change DNA gels genetic analysis genetic markers genome InDel marker introgression Leersia Oryza genus Oryza minuta Oryza punctata Oryza sativa plant biology stress tolerance wild rice Wild rice species |
| Title | Development and validation of a genome-wide InDel marker set discriminating the alleles between the BB-genome Oryza species and rice (O. sativa) |
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