Empathi: embedding-based phage protein annotation tool by hierarchical assignment

Bacteriophages, viruses infecting bacteria, are estimated to outnumber their cellular hosts by 10-fold, acting as key players in all microbial ecosystems. Under evolutionary pressure by their host, they evolve rapidly and encode a large diversity of protein sequences. Consequently, the majority of f...

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Bibliographic Details
Published in:	Nature communications Vol. 16; no. 1; pp. 9114 - 9
Main Authors:	Boulay, Alexandre, Leprince, Audrey, Enault, François, Rousseau, Elsa, Galiez, Clovis
Format:	Journal Article
Language:	English
Published:	London Nature Publishing Group UK 14.10.2025 Nature Publishing Group Nature Portfolio
Subjects:	631/114/1305 631/114/2410 631/326/1321 Amino acid sequence Annotations Bacteria Bacteria - virology Bacteriophages - genetics Bacteriophages - metabolism Computational Biology - methods Databases, Protein Datasets Embedding Genome, Viral Genomes Homology Humanities and Social Sciences Learning algorithms Machine Learning Metabolism Microbial activity Microorganisms Molecular Sequence Annotation - methods multidisciplinary Phages Protein families Proteins Science Science (multidisciplinary) Software Viral Proteins - classification Viral Proteins - genetics Viral Proteins - metabolism
ISSN:	2041-1723, 2041-1723
Online Access:	Get full text
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