A review of methods and databases for metagenomic classification and assembly

Abstract Microbiome research has grown rapidly over the past decade, with a proliferation of new methods that seek to make sense of large, complex data sets. Here, we survey two of the primary types of methods for analyzing microbiome data: read classification and metagenomic assembly, and we review...

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Vydané v:	Briefings in bioinformatics Ročník 20; číslo 4; s. 1125 - 1136
Hlavní autori:	Breitwieser, Florian P, Lu, Jennifer, Salzberg, Steven L
Médium:	Journal Article
Jazyk:	English
Vydavateľské údaje:	England Oxford University Press 19.07.2019 Oxford Publishing Limited (England)
Predmet:	Algorithms Assembly Classification Computational Biology - methods Databases, Genetic - statistics & numerical data Gene Expression Profiling - statistics & numerical data Genetic Markers Genomes High-Throughput Nucleotide Sequencing - statistics & numerical data Metagenome Metagenomics Metagenomics - methods Metagenomics - statistics & numerical data Microbiomes Microbiota - genetics Phylogeny Sequence Alignment - statistics & numerical data databases bacteria next-generation sequencing microbiome microbial genomics
ISSN:	1467-5463, 1477-4054, 1477-4054
On-line prístup:	Získať plný text
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