X-ray nano-holotomography reconstruction with simultaneous probe retrieval
In conventional tomographic reconstruction, the pre-processing step includes flat-field correction, where each sample projection on the detector is divided by a reference image taken without the sample. When using coherent X-rays as a probe, this approach overlooks the phase component of the illumin...
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| Vydané v: | Optics express Ročník 32; číslo 23; s. 41905 |
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| Hlavní autori: | , , , , |
| Médium: | Journal Article |
| Jazyk: | English |
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United States
Optical Society of America - OSA Publishing
04.11.2024
Optical Society of America |
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| ISSN: | 1094-4087, 1094-4087 |
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| Abstract | In conventional tomographic reconstruction, the pre-processing step includes flat-field correction, where each sample projection on the detector is divided by a reference image taken without the sample. When using coherent X-rays as a probe, this approach overlooks the phase component of the illumination field (probe), leading to artifacts in phase-retrieved projection images, which are then propagated to the reconstructed 3D sample representation. The problem intensifies in nano-holotomography with focusing optics, which, due to various imperfections creates high-frequency components in the probe function. Here, we present a new iterative reconstruction scheme for holotomography, simultaneously retrieving the complex-valued probe function. Implemented on GPUs, this algorithm results in 3D reconstruction resolving twice thinner layers in a 3D ALD standard sample measured using nano-holotomography. |
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| AbstractList | In conventional tomographic reconstruction, the pre-processing step includes flat-field correction, where each sample projection on the detector is divided by a reference image taken without the sample. When using coherent X-rays as a probe, this approach overlooks the phase component of the illumination field (probe), leading to artifacts in phase-retrieved projection images, which are then propagated to the reconstructed 3D sample representation. The problem intensifies in nano-holotomography with focusing optics, which, due to various imperfections creates high-frequency components in the probe function. Here, we present a new iterative reconstruction scheme for holotomography, simultaneously retrieving the complex-valued probe function. Implemented on GPUs, this algorithm results in 3D reconstruction resolving twice thinner layers in a 3D ALD standard sample measured using nano-holotomography. In conventional tomographic reconstruction, the pre-processing step includes flat-field correction, where each sample projection on the detector is divided by a reference image taken without the sample. When using coherent X-rays as a probe, this approach overlooks the phase component of the illumination field (probe), leading to artifacts in phase-retrieved projection images, which are then propagated to the reconstructed 3D sample representation. The problem intensifies in nano-holotomography with focusing optics, which, due to various imperfections creates high-frequency components in the probe function. Here, we present a new iterative reconstruction scheme for holotomography, simultaneously retrieving the complex-valued probe function. Implemented on GPUs, this algorithm results in 3D reconstruction resolving twice thinner layers in a 3D ALD standard sample measured using nano-holotomography.In conventional tomographic reconstruction, the pre-processing step includes flat-field correction, where each sample projection on the detector is divided by a reference image taken without the sample. When using coherent X-rays as a probe, this approach overlooks the phase component of the illumination field (probe), leading to artifacts in phase-retrieved projection images, which are then propagated to the reconstructed 3D sample representation. The problem intensifies in nano-holotomography with focusing optics, which, due to various imperfections creates high-frequency components in the probe function. Here, we present a new iterative reconstruction scheme for holotomography, simultaneously retrieving the complex-valued probe function. Implemented on GPUs, this algorithm results in 3D reconstruction resolving twice thinner layers in a 3D ALD standard sample measured using nano-holotomography. |
| Author | Mokso, Rajmund Cloetens, Peter Nikitin, Viktor Gürsoy, Doğa Carlsson, Marcus |
| Author_xml | – sequence: 1 givenname: Viktor orcidid: 0000-0001-9999-169X surname: Nikitin fullname: Nikitin, Viktor – sequence: 2 givenname: Marcus surname: Carlsson fullname: Carlsson, Marcus – sequence: 3 givenname: Doğa orcidid: 0000-0002-0080-8101 surname: Gürsoy fullname: Gürsoy, Doğa – sequence: 4 givenname: Rajmund surname: Mokso fullname: Mokso, Rajmund – sequence: 5 givenname: Peter orcidid: 0000-0002-4129-9091 surname: Cloetens fullname: Cloetens, Peter |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/39573488$$D View this record in MEDLINE/PubMed https://hal.science/hal-05099517$$DView record in HAL https://www.osti.gov/biblio/2475876$$D View this record in Osti.gov |
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| Cites_doi | 10.1117/1.JMI.7.1.013501 10.1107/S1600577521012200 10.1016/j.bpj.2019.11.1647 10.1371/journal.pone.0035691 10.1103/PhysRevLett.100.184801 10.1098/rspa.2016.0640 10.1063/1.1960797 10.1116/1.5025240 10.1109/TCI.2021.3060915 10.1073/pnas.2012533117 10.1107/S1600577515007742 10.1364/OE.22.011552 10.1364/OE.514641 10.1364/OPTICA.447021 10.1002/aenm.202003529 10.1103/PhysRevA.91.013821 10.1364/OL.23.000817 10.1016/0041-5553(69)90035-4 10.1364/OE.27.009128 10.1364/OSAC.2.002948 10.1137/S1052623497318992 10.1107/S0909049511051983 10.1126/science.abm8962 10.1107/S160057751700128X 10.1093/comjnl/7.2.149 10.1016/j.ultramic.2009.05.012 10.1107/S1600577515019839 10.1029/RS023i004p00713 10.1137/S1052623494268443 10.1364/OE.19.021345 10.1038/s41586-024-07615-6 10.1118/1.2975224 10.1063/1.125225 10.1088/0266-5611/21/1/004 10.1364/JOSAA.13.001670 10.1038/srep01927 |
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| SubjectTerms | Atom and Molecular Physics and Optics Atom- och molekylfysik och optik (Här ingår: Kemisk fysik, kvantoptik) Computer and Information Sciences Computer graphics and computer vision Data- och informationsvetenskap (Datateknik) Datorgrafik och datorseende Fysik Natural Sciences Naturvetenskap Physical Sciences Physics Subatomic Physics Subatomär fysik |
| Title | X-ray nano-holotomography reconstruction with simultaneous probe retrieval |
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