Complete Genome Sequence of Escherichia Phage Lw1, a New Member of the RB43 Group of Pseudo T-Even Bacteriophages

RB43-related bacteriophages have a specific genome type that clearly distinguishes them from other T4-like viruses. Here, we present the complete genome sequence of a new virulent phage, Lw1, isolated as an Escherichia coli BL21(DE3) contaminant. Lw1 shares an RB43-like genome organization, but it d...

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Veröffentlicht in:Genome announcements (Washington, DC) Jg. 1; H. 6
Hauptverfasser: Kushkina, Alla I., Tovkach, Fedor I., Comeau, André M., Kostetskii, Igor E., Lisovski, Igor, Ostapchuk, Andriy M., Voychuk, Sergiy I., Gorb, Tetiana I., Romaniuk, Liudmyla V.
Format: Journal Article
Sprache:Englisch
Veröffentlicht: United States American Society for Microbiology 12.12.2013
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ISSN:2169-8287, 2169-8287
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Abstract RB43-related bacteriophages have a specific genome type that clearly distinguishes them from other T4-like viruses. Here, we present the complete genome sequence of a new virulent phage, Lw1, isolated as an Escherichia coli BL21(DE3) contaminant. Lw1 shares an RB43-like genome organization, but it does not contain putative AP2-domain endonuclease genes.
AbstractList RB43-related bacteriophages have a specific genome type that clearly distinguishes them from other T4-like viruses. Here, we present the complete genome sequence of a new virulent phage, Lw1, isolated as an Escherichia coli BL21(DE3) contaminant. Lw1 shares an RB43-like genome organization, but it does not contain putative AP2-domain endonuclease genes.
RB43-related bacteriophages have a specific genome type that clearly distinguishes them from other T4-like viruses. Here, we present the complete genome sequence of a new virulent phage, Lw1, isolated as an Escherichia coli BL21(DE3) contaminant. Lw1 shares an RB43-like genome organization, but it does not contain putative AP2-domain endonuclease genes.
RB43-related bacteriophages have a specific genome type that clearly distinguishes them from other T4-like viruses. Here, we present the complete genome sequence of a new virulent phage, Lw1, isolated as an Escherichia coli BL21(DE3) contaminant. Lw1 shares an RB43-like genome organization, but it does not contain putative AP2-domain endonuclease genes.RB43-related bacteriophages have a specific genome type that clearly distinguishes them from other T4-like viruses. Here, we present the complete genome sequence of a new virulent phage, Lw1, isolated as an Escherichia coli BL21(DE3) contaminant. Lw1 shares an RB43-like genome organization, but it does not contain putative AP2-domain endonuclease genes.
Author Gorb, Tetiana I.
Lisovski, Igor
Voychuk, Sergiy I.
Ostapchuk, Andriy M.
Romaniuk, Liudmyla V.
Kostetskii, Igor E.
Kushkina, Alla I.
Tovkach, Fedor I.
Comeau, André M.
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9672598 - Arch Virol. 1997;142(12):2329-45
15319480 - Plant Cell. 2004 Sep;16(9):2265-77
9096222 - J Mol Biol. 1997 Mar 28;267(2):237-49
23537199 - Virol J. 2013 Mar 28;10:100
16828113 - J Mol Biol. 2006 Aug 4;361(1):46-68
16716236 - Virol J. 2006 May 23;3:30
23166229 - J Virol. 2012 Dec;86(24):13806-7
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Snippet RB43-related bacteriophages have a specific genome type that clearly distinguishes them from other T4-like viruses. Here, we present the complete genome...
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SubjectTerms bacteriophages
Escherichia coli
genes
nucleotide sequences
virulence
Viruses
Title Complete Genome Sequence of Escherichia Phage Lw1, a New Member of the RB43 Group of Pseudo T-Even Bacteriophages
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