Draft Genome Sequences of Six Novel Bacterial Isolates from Chicken Ceca

The chicken is the most common domesticated animal and the most abundant bird in the world. However, the chicken gut is home to many previously uncharacterized bacterial taxa. Here, we report draft genome sequences from six bacterial isolates from chicken ceca, all of which fall outside any named sp...

Celý popis

Uloženo v:
Podrobná bibliografie
Vydáno v:Genome announcements (Washington, DC) Ročník 4; číslo 3
Hlavní autoři: Duggett, Nicholas A., Kay, Gemma L., Sergeant, Martin J., Bedford, Michael, Constantinidou, Chrystala I., Penn, Charles W., Millard, Andrew D., Pallen, Mark J.
Médium: Journal Article
Jazyk:angličtina
Vydáno: United States American Society for Microbiology 26.05.2016
Témata:
ISSN:2169-8287, 2169-8287, 2576-098X
On-line přístup:Získat plný text
Tagy: Přidat tag
Žádné tagy, Buďte první, kdo vytvoří štítek k tomuto záznamu!
Abstract The chicken is the most common domesticated animal and the most abundant bird in the world. However, the chicken gut is home to many previously uncharacterized bacterial taxa. Here, we report draft genome sequences from six bacterial isolates from chicken ceca, all of which fall outside any named species.
AbstractList The chicken is the most common domesticated animal and the most abundant bird in the world. However, the chicken gut is home to many previously uncharacterized bacterial taxa. Here, we report draft genome sequences from six bacterial isolates from chicken ceca, all of which fall outside any named species.
The chicken is the most common domesticated animal and the most abundant bird in the world. However, the chicken gut is home to many previously uncharacterized bacterial taxa. Here, we report draft genome sequences from six bacterial isolates from chicken ceca, all of which fall outside any named species.The chicken is the most common domesticated animal and the most abundant bird in the world. However, the chicken gut is home to many previously uncharacterized bacterial taxa. Here, we report draft genome sequences from six bacterial isolates from chicken ceca, all of which fall outside any named species.
Author Sergeant, Martin J.
Duggett, Nicholas A.
Penn, Charles W.
Kay, Gemma L.
Millard, Andrew D.
Pallen, Mark J.
Bedford, Michael
Constantinidou, Chrystala I.
Author_xml – sequence: 1
  givenname: Nicholas A.
  surname: Duggett
  fullname: Duggett, Nicholas A.
  organization: Microbiology and Infection Unit, Warwick Medical School, University of Warwick, Coventry, United Kingdom
– sequence: 2
  givenname: Gemma L.
  surname: Kay
  fullname: Kay, Gemma L.
  organization: Microbiology and Infection Unit, Warwick Medical School, University of Warwick, Coventry, United Kingdom
– sequence: 3
  givenname: Martin J.
  surname: Sergeant
  fullname: Sergeant, Martin J.
  organization: Microbiology and Infection Unit, Warwick Medical School, University of Warwick, Coventry, United Kingdom
– sequence: 4
  givenname: Michael
  surname: Bedford
  fullname: Bedford, Michael
  organization: AB Vista Feed Ingredients, Marlborough, United Kingdom
– sequence: 5
  givenname: Chrystala I.
  surname: Constantinidou
  fullname: Constantinidou, Chrystala I.
  organization: Microbiology and Infection Unit, Warwick Medical School, University of Warwick, Coventry, United Kingdom
– sequence: 6
  givenname: Charles W.
  surname: Penn
  fullname: Penn, Charles W.
  organization: School of Biosciences, University of Birmingham, Birmingham, United Kingdom
– sequence: 7
  givenname: Andrew D.
  surname: Millard
  fullname: Millard, Andrew D.
  organization: Microbiology and Infection Unit, Warwick Medical School, University of Warwick, Coventry, United Kingdom
– sequence: 8
  givenname: Mark J.
  surname: Pallen
  fullname: Pallen, Mark J.
  organization: Microbiology and Infection Unit, Warwick Medical School, University of Warwick, Coventry, United Kingdom
BackLink https://www.ncbi.nlm.nih.gov/pubmed/27231374$$D View this record in MEDLINE/PubMed
BookMark eNp1UU1PGzEQtSqqAin3nipLvfSy1F-7ti-VIHwECdEDcLa8ziyY7trU3kTl3-NAqNJIzGVGnvee3vjto50QAyD0hZJDSpn6cQchDnB0SIgQqqLNB7THaKMrxZTc2Zh30UHOD6SUKk9CfUK7TDJOuRR7aHaSbDfi8xctfA1_FhAcZBw7fO3_4qu4hB4fWzdC8rbHFzn2diz7LsUBT--9-w0BT8HZz-hjZ_sMB-s-QbdnpzfTWXX56_xienRZOcHEWFFOW0Jc4-ZECdkykLVWWnbWtZy1XNWd5HoueKtKF64B5ZrOMsEdAV3Lmk_Qz1fdx0U7wNxBGJPtzWPyg01PJlpv_t8Ef2_u4tIIpZiuVwLf1wIplmvzaAafHfS9DRAX2VCpGZdK1KpAv21BH-IihXKeobrmQmrerFBfNx39s_L2yQXQvAJcijkn6Izzox19XBn0vaHErAI160DNS6CGNoVItohv2u9SngHnZ6NA
CitedBy_id crossref_primary_10_1186_s13059_020_1947_1
crossref_primary_10_1186_s12864_018_4959_4
crossref_primary_10_3382_ps_pez327
crossref_primary_10_3390_ani12101296
crossref_primary_10_1016_j_bbi_2024_05_037
Cites_doi 10.4056/sigs.531120
10.1073/pnas.0906412106
10.1089/cmb.2012.0021
10.1016/j.syapm.2008.07.001
10.1093/bioinformatics/btp698
10.1093/bioinformatics/btu153
10.1038/nmeth.2575
ContentType Journal Article
Copyright Copyright © 2016 Duggett et al.
Copyright © 2016 Duggett et al. This work is licensed under the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
Copyright © 2016 Duggett et al. 2016 Duggett et al.
Copyright_xml – notice: Copyright © 2016 Duggett et al.
– notice: Copyright © 2016 Duggett et al. This work is licensed under the Creative Commons Attribution License (https://creativecommons.org/licenses/by/3.0/) (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
– notice: Copyright © 2016 Duggett et al. 2016 Duggett et al.
DBID AAYXX
CITATION
NPM
3V.
7X7
7XB
8FI
8FJ
8FK
ABUWG
AFKRA
AZQEC
BENPR
CCPQU
DWQXO
FYUFA
GHDGH
K9.
M0S
PHGZM
PHGZT
PIMPY
PJZUB
PKEHL
PPXIY
PQEST
PQQKQ
PQUKI
PRINS
7X8
5PM
DOI 10.1128/genomeA.00448-16
DatabaseName CrossRef
PubMed
ProQuest Central (Corporate)
Health & Medical Collection
ProQuest Central (purchase pre-March 2016)
Hospital Premium Collection
Hospital Premium Collection (Alumni Edition)
ProQuest Central (Alumni) (purchase pre-March 2016)
ProQuest Central (Alumni)
ProQuest Central UK/Ireland
ProQuest Central Essentials
ProQuest Central
ProQuest One Community College
ProQuest Central
Health Research Premium Collection
Health Research Premium Collection (Alumni)
ProQuest Health & Medical Complete (Alumni)
Health & Medical Collection (Alumni Edition)
ProQuest Central Premium
ProQuest One Academic
Publicly Available Content Database
ProQuest Health & Medical Research Collection
ProQuest One Academic Middle East (New)
One Health & Nursing
ProQuest One Academic Eastern Edition (DO NOT USE)
ProQuest One Academic (retired)
ProQuest One Academic UKI Edition
ProQuest Central China
MEDLINE - Academic
PubMed Central (Full Participant titles)
DatabaseTitle CrossRef
PubMed
Publicly Available Content Database
ProQuest One Academic Middle East (New)
ProQuest Central Essentials
ProQuest One Academic Eastern Edition
ProQuest Health & Medical Complete (Alumni)
ProQuest Central (Alumni Edition)
ProQuest One Community College
ProQuest Hospital Collection
Health Research Premium Collection (Alumni)
ProQuest One Health & Nursing
ProQuest Central China
ProQuest Hospital Collection (Alumni)
ProQuest Central
ProQuest Health & Medical Complete
ProQuest Health & Medical Research Collection
Health Research Premium Collection
ProQuest One Academic UKI Edition
Health and Medicine Complete (Alumni Edition)
ProQuest Central Korea
ProQuest Central (New)
ProQuest One Academic
ProQuest One Academic (New)
ProQuest Central (Alumni)
MEDLINE - Academic
DatabaseTitleList CrossRef

MEDLINE - Academic
PubMed
Publicly Available Content Database
Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 2
  dbid: PIMPY
  name: Publicly Available Content Database
  url: http://search.proquest.com/publiccontent
  sourceTypes: Aggregation Database
DeliveryMethod fulltext_linktorsrc
Discipline Biology
DocumentTitleAlternate Genome Announcement
EISSN 2169-8287
2576-098X
ExternalDocumentID PMC4882955
27231374
10_1128_genomeA_00448_16
Genre Journal Article
GrantInformation_xml – fundername: AB Vista
– fundername: Biotechnology and Biological Sciences Research Council (BBSRC)
  grantid: BB/H019340/2
– fundername: the Warwick Medical School, University of Warwick
GroupedDBID 0R~
53G
5VS
AAGFI
AAUOK
AAYXX
ADBBV
ADRAZ
ALMA_UNASSIGNED_HOLDINGS
AOIJS
BAWUL
BPHCQ
BTFSW
BVXVI
CITATION
DIK
EBS
EJD
H13
HYE
KQ8
M48
M~E
O9-
PGMZT
PQQKQ
PROAC
RHI
RPM
RSF
NPM
3V.
7X7
7XB
8FI
8FJ
8FK
ABUWG
AFFHD
AFKRA
AZQEC
BENPR
CCPQU
DWQXO
FRP
FYUFA
HMCUK
K9.
PHGZM
PHGZT
PIMPY
PJZUB
PKEHL
PPXIY
PQEST
PQUKI
PRINS
UKHRP
ZCN
7X8
5PM
ID FETCH-LOGICAL-c424t-131b00c6cd0847b2e759897facb32b385f739d43b87394c6e8c6fa243c0e95753
IEDL.DBID BENPR
ISICitedReferencesCount 6
ISICitedReferencesURI http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000460660100124&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
ISSN 2169-8287
IngestDate Thu Aug 21 18:34:42 EDT 2025
Fri Jul 11 11:27:46 EDT 2025
Sat Nov 29 14:34:26 EST 2025
Mon Jul 21 05:58:10 EDT 2025
Sat Nov 29 02:06:14 EST 2025
Tue Nov 18 22:35:10 EST 2025
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Issue 3
Language English
License Copyright © 2016 Duggett et al.
This is an open-access article distributed under the terms of the Creative Commons Attribution 4.0 International license.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c424t-131b00c6cd0847b2e759897facb32b385f739d43b87394c6e8c6fa243c0e95753
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 14
content type line 23
Present address: Nicholas A. Duggett, APHA Weybridge, New Haw, Surrey, United Kingdom.
A.D.M. and M.J.P. contributed equally to this work.
N.A.D. and G.L.K. contributed equally to this work.
OpenAccessLink https://www.proquest.com/docview/1953479368?pq-origsite=%requestingapplication%
PMID 27231374
PQID 1953479368
PQPubID 2045577
ParticipantIDs pubmedcentral_primary_oai_pubmedcentral_nih_gov_4882955
proquest_miscellaneous_1792378458
proquest_journals_1953479368
pubmed_primary_27231374
crossref_citationtrail_10_1128_genomeA_00448_16
crossref_primary_10_1128_genomeA_00448_16
PublicationCentury 2000
PublicationDate 20160526
PublicationDateYYYYMMDD 2016-05-26
PublicationDate_xml – month: 5
  year: 2016
  text: 20160526
  day: 26
PublicationDecade 2010
PublicationPlace United States
PublicationPlace_xml – name: United States
– name: Washington
– name: 1752 N St., N.W., Washington, DC
PublicationTitle Genome announcements (Washington, DC)
PublicationTitleAlternate Genome Announc
PublicationYear 2016
Publisher American Society for Microbiology
Publisher_xml – name: American Society for Microbiology
References e_1_3_1_8_2
e_1_3_1_7_2
e_1_3_1_4_2
e_1_3_1_3_2
e_1_3_1_6_2
e_1_3_1_5_2
e_1_3_1_2_2
18692976 - Syst Appl Microbiol. 2008 Sep;31(4):241-50
20080505 - Bioinformatics. 2010 Mar 1;26(5):589-95
19855009 - Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):19126-31
22506599 - J Comput Biol. 2012 May;19(5):455-77
24642063 - Bioinformatics. 2014 Jul 15;30(14):2068-9
23892899 - Nat Methods. 2013 Sep;10(9):881-4
21304684 - Stand Genomic Sci. 2010 Jan 28;2(1):117-34
References_xml – ident: e_1_3_1_7_2
  doi: 10.4056/sigs.531120
– ident: e_1_3_1_8_2
  doi: 10.1073/pnas.0906412106
– ident: e_1_3_1_3_2
  doi: 10.1089/cmb.2012.0021
– ident: e_1_3_1_2_2
  doi: 10.1016/j.syapm.2008.07.001
– ident: e_1_3_1_4_2
  doi: 10.1093/bioinformatics/btp698
– ident: e_1_3_1_5_2
  doi: 10.1093/bioinformatics/btu153
– ident: e_1_3_1_6_2
  doi: 10.1038/nmeth.2575
– reference: 18692976 - Syst Appl Microbiol. 2008 Sep;31(4):241-50
– reference: 23892899 - Nat Methods. 2013 Sep;10(9):881-4
– reference: 24642063 - Bioinformatics. 2014 Jul 15;30(14):2068-9
– reference: 19855009 - Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):19126-31
– reference: 20080505 - Bioinformatics. 2010 Mar 1;26(5):589-95
– reference: 21304684 - Stand Genomic Sci. 2010 Jan 28;2(1):117-34
– reference: 22506599 - J Comput Biol. 2012 May;19(5):455-77
SSID ssj0000816948
ssj0002048963
Score 2.0301213
Snippet The chicken is the most common domesticated animal and the most abundant bird in the world. However, the chicken gut is home to many previously uncharacterized...
SourceID pubmedcentral
proquest
pubmed
crossref
SourceType Open Access Repository
Aggregation Database
Index Database
Enrichment Source
SubjectTerms Prokaryotes
Title Draft Genome Sequences of Six Novel Bacterial Isolates from Chicken Ceca
URI https://www.ncbi.nlm.nih.gov/pubmed/27231374
https://www.proquest.com/docview/1953479368
https://www.proquest.com/docview/1792378458
https://pubmed.ncbi.nlm.nih.gov/PMC4882955
Volume 4
WOSCitedRecordID wos000460660100124&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
journalDatabaseRights – providerCode: PRVHPJ
  databaseName: ROAD: Directory of Open Access Scholarly Resources
  customDbUrl:
  eissn: 2169-8287
  dateEnd: 20181231
  omitProxy: false
  ssIdentifier: ssj0000816948
  issn: 2169-8287
  databaseCode: M~E
  dateStart: 20130101
  isFulltext: true
  titleUrlDefault: https://road.issn.org
  providerName: ISSN International Centre
– providerCode: PRVPQU
  databaseName: ProQuest Central
  customDbUrl:
  eissn: 2169-8287
  dateEnd: 20180131
  omitProxy: false
  ssIdentifier: ssj0002048963
  issn: 2169-8287
  databaseCode: BENPR
  dateStart: 20150101
  isFulltext: true
  titleUrlDefault: https://www.proquest.com/central
  providerName: ProQuest
– providerCode: PRVPQU
  databaseName: ProQuest Health & Medical Collection
  customDbUrl:
  eissn: 2169-8287
  dateEnd: 20180131
  omitProxy: false
  ssIdentifier: ssj0002048963
  issn: 2169-8287
  databaseCode: 7X7
  dateStart: 20150101
  isFulltext: true
  titleUrlDefault: https://search.proquest.com/healthcomplete
  providerName: ProQuest
– providerCode: PRVPQU
  databaseName: Publicly Available Content Database
  customDbUrl:
  eissn: 2169-8287
  dateEnd: 20180131
  omitProxy: false
  ssIdentifier: ssj0002048963
  issn: 2169-8287
  databaseCode: PIMPY
  dateStart: 20150101
  isFulltext: true
  titleUrlDefault: http://search.proquest.com/publiccontent
  providerName: ProQuest
link http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwpV3Nb9MwFH9iHQcuA8RXYUxG4sIhrPV3TmgbHZvEqooBKqfIcRxRbSSj7aad9rfzXuoECtIuXBJZflae7Gf7feX3AF4bApFz2qPwGoUGSigSWxYuEblxhdJFyht_x9ePZjy202k6iQ63RUyrbM_E5qAuak8-8l0K95AXSNt3Fz8TqhpF0dVYQmMDNgmpTPZgc380nnzqvCwES4si1sYnOVp7oap_hL23FMlE-0mv30f_KJl_50r-cfkc3v9fth_AVlQ72d5KTh7CnVA9gqP3c1cu2YeGV3baJlWzumSns2s2rq_COdtfwTnj4GMUU9JMGf2SwiiH4yxU7CB49xi-HI4-HxwlsbJC4iWXVH9-iNvNa18M8HbKeTAqtakpnc8Fz4VVpRFpIUVu8S29Dtbr0nEp_CCkqOCJJ9Cr6io8AxaKYId-kFOxT6l8aX0eZGkHTnEVpBF92G3nN_MRdpyqX5xnjfnBbRZXJGtWJBvqPrzpRlysIDduod1upz2Lm2-R_Z7zPrzqunHbUCzEVaG-RBrCTTTIMdI8Xa1w9zFuUOkVRvbBrK19R0CQ3Os91ex7A82NxyFPlXp-O1sv4B7qXZqSELjeht5yfhlewl1_tZwt5juwYaamedqdKM_YOrkZYWtyfDL59gvjtgIJ
linkProvider ProQuest
linkToHtml http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMw1V1Lb9NAEB61KVK58BCvQIFFggMHk2S9Lx8QKi0lUdMoUgsqJ7Ner0VEsUuSFvhT_EZm_IKA1FsPnHzYWXu18-14XjsD8FRTETmrHIJXSzRQfBqYLLVBmGibSpVGvPR3vB_rycQcH0fTNfjZ3IWhtMpGJpaCOi0c-ch7FO4hL5Ayr06_BtQ1iqKrTQuNChb7_sc3NNkWL0e7yN9nnO-9OdoZBnVXgcAJLqj3-gCh5pRL-yiZE-61jEykM-uSkCehkZkOo1SEicGncMobpzLLRej6PkLlJsT3rsOGQLCbDmxMRwfTD61Xh8rgIqSbeChH69LnxRe__YIip2ivqdX_3z9K7d-5mX_87Pau_2_bdAOu1Wo1267OwU1Y8_ktGO7ObbZkb8u9YYdN0jgrMnY4-84mxbk_Ya-rctU4eYTHkDRvRlduGOWofPY52_HO3oZ3l7L4O9DJi9zfA-ZTbwaun1AzUyFdZlziRWb6VnLphQ670Gv4Gbu6rDp19ziJS_OKm7hGQFwiIB6oLjxvZ5xWJUUuoN1q2BzXwmUR_-ZxF560wygWKNZjc1-cIQ3VhdS4YqS5WyGq_RjXqNSHWnRBr2CtJaCS46sj-exTWXocxT2PpLx_8bIew-bw6GAcj0eT_QdwFXVMRQkXXG1BZzk_8w_hijtfzhbzR_X5YfDxsrH4C4spWKw
linkToPdf http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMw1V1Lb9NAEB6VFiEuFAS0gQKLBAcOJsm-fUCoNIRGLVGkAionY6_XImprlyQt5a_x65jxCwJSbz1w8sG79mrnm9l57QzAM0NF5GLtELxGoYHi08BmaRyIxMSp0mnIS3_Hp30zHtvDw3CyAj-buzCUVtnIxFJQp4UjH3mXwj3kBdK2m9VpEZPB8PXpt4A6SFGktWmnUUFkz__4jubb_NVogLR-zvnw7Yed3aDuMBA4ySX1Ye8j7Jx2aQ-ldMK9UaENTRa7RPBEWJUZEaZSJBaf0mlvnc5iLoXr-RAVHYHfvQZrqJJL5LG1yej95HPr4aGSuAjvJjbK0dL0eXHit19SFBVtN718Fv6j4P6dp_nHwTdc_5-37DbcqtVttl3xxx1Y8fld2B3M4mzB3pX7xA6aZHJWZOxgesHGxbk_Zm-qMtY4eYTsSRo5o6s4jHJXjnzOdryL78HHK1n8fVjNi9xvAvOpt33XS6jJqVQusy7xMrO9WHHlpREd6Da0jVxdbp26fhxHpdnFbVSjISrREPV1B160M06rUiOXjN1qSB7VQmce_aZ3B562r1FcUAwozn1xhmOoXqTBFeOYjQpd7c-4QWVfGNkBs4S7dgCVIl9-k0-_liXJ8RjgoVIPLl_WE7iBAIz2R-O9h3ATVU9NeRhcb8HqYnbmH8F1d76YzmePa1Zi8OWqofgLJNNhbA
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Draft+Genome+Sequences+of+Six+Novel+Bacterial+Isolates+from+Chicken+Ceca&rft.jtitle=Genome+announcements+%28Washington%2C+DC%29&rft.au=Duggett%2C+Nicholas+A.&rft.au=Kay%2C+Gemma+L.&rft.au=Sergeant%2C+Martin+J.&rft.au=Bedford%2C+Michael&rft.date=2016-05-26&rft.pub=American+Society+for+Microbiology&rft.eissn=2169-8287&rft.volume=4&rft.issue=3&rft_id=info:doi/10.1128%2FgenomeA.00448-16&rft_id=info%3Apmid%2F27231374&rft.externalDocID=PMC4882955
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=2169-8287&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=2169-8287&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=2169-8287&client=summon