Enabling Model-Based Design for Real-Time Spike Detection
Goal : This study addresses the inherent difficulties in the creation of neuroengineering devices for real-time neural signal processing, a task typically characterized by intricate and technically demanding processes. Beneath the substantial hardware advancements in neurotechnology, there is often...
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| Published in: | IEEE open journal of engineering in medicine and biology Vol. 6; pp. 312 - 319 |
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| Main Authors: | , , , , , |
| Format: | Journal Article |
| Language: | English |
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2025
The Institute of Electrical and Electronics Engineers, Inc. (IEEE) |
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| ISSN: | 2644-1276, 2644-1276 |
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| Abstract | Goal : This study addresses the inherent difficulties in the creation of neuroengineering devices for real-time neural signal processing, a task typically characterized by intricate and technically demanding processes. Beneath the substantial hardware advancements in neurotechnology, there is often rather complex low-level code that poses challenges in terms of development, documentation, and long-term maintenance. Methods : We adopted an alternative strategy centered on Model-Based Design (MBD) to simplify the creation of neuroengineering systems and reduce the entry barriers. MBD offers distinct advantages by streamlining the design workflow, from modelling to implementation, thus facilitating the development of intricate systems. A spike detection algorithm has been implemented on a commercially available system based on a Field-Programmable Gate Array (FPGA) that combines neural probe electronics with configurable integrated circuit. The entire process of data handling and data processing was performed within the Simulink environment, with subsequent generation of hardware description language (HDL) code tailored to the FPGA hardware. Results : The validation was conducted through in vivo experiments involving six animals and demonstrated the capability of our MBD-based real time processing (latency <= 100.37 µs) to achieve the same performances of offline spike detection. Conclusions : This methodology can have a significant impact in the development of neuroengineering systems by speeding up the prototyping of various system architectures. We have made all project code files open source, thereby providing free access to fellow scientists interested in the development of neuroengineering systems. |
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| AbstractList | Goal : This study addresses the inherent difficulties in the creation of neuroengineering devices for real-time neural signal processing, a task typically characterized by intricate and technically demanding processes. Beneath the substantial hardware advancements in neurotechnology, there is often rather complex low-level code that poses challenges in terms of development, documentation, and long-term maintenance. Methods : We adopted an alternative strategy centered on Model-Based Design (MBD) to simplify the creation of neuroengineering systems and reduce the entry barriers. MBD offers distinct advantages by streamlining the design workflow, from modelling to implementation, thus facilitating the development of intricate systems. A spike detection algorithm has been implemented on a commercially available system based on a Field-Programmable Gate Array (FPGA) that combines neural probe electronics with configurable integrated circuit. The entire process of data handling and data processing was performed within the Simulink environment, with subsequent generation of hardware description language (HDL) code tailored to the FPGA hardware. Results : The validation was conducted through in vivo experiments involving six animals and demonstrated the capability of our MBD-based real time processing (latency <= 100.37 µs) to achieve the same performances of offline spike detection. Conclusions : This methodology can have a significant impact in the development of neuroengineering systems by speeding up the prototyping of various system architectures. We have made all project code files open source, thereby providing free access to fellow scientists interested in the development of neuroengineering systems. Goal: This study addresses the inherent difficulties in the creation of neuroengineering devices for real-time neural signal processing, a task typically characterized by intricate and technically demanding processes. Beneath the substantial hardware advancements in neurotechnology, there is often rather complex low-level code that poses challenges in terms of development, documentation, and long-term maintenance. Methods: We adopted an alternative strategy centered on Model-Based Design (MBD) to simplify the creation of neuroengineering systems and reduce the entry barriers. MBD offers distinct advantages by streamlining the design workflow, from modelling to implementation, thus facilitating the development of intricate systems. A spike detection algorithm has been implemented on a commercially available system based on a Field-Programmable Gate Array (FPGA) that combines neural probe electronics with configurable integrated circuit. The entire process of data handling and data processing was performed within the Simulink environment, with subsequent generation of hardware description language (HDL) code tailored to the FPGA hardware. Results: The validation was conducted through in vivo experiments involving six animals and demonstrated the capability of our MBD-based real time processing (latency <= 100.37 µs) to achieve the same performances of offline spike detection. Conclusions: This methodology can have a significant impact in the development of neuroengineering systems by speeding up the prototyping of various system architectures. We have made all project code files open source, thereby providing free access to fellow scientists interested in the development of neuroengineering systems.Goal: This study addresses the inherent difficulties in the creation of neuroengineering devices for real-time neural signal processing, a task typically characterized by intricate and technically demanding processes. Beneath the substantial hardware advancements in neurotechnology, there is often rather complex low-level code that poses challenges in terms of development, documentation, and long-term maintenance. Methods: We adopted an alternative strategy centered on Model-Based Design (MBD) to simplify the creation of neuroengineering systems and reduce the entry barriers. MBD offers distinct advantages by streamlining the design workflow, from modelling to implementation, thus facilitating the development of intricate systems. A spike detection algorithm has been implemented on a commercially available system based on a Field-Programmable Gate Array (FPGA) that combines neural probe electronics with configurable integrated circuit. The entire process of data handling and data processing was performed within the Simulink environment, with subsequent generation of hardware description language (HDL) code tailored to the FPGA hardware. Results: The validation was conducted through in vivo experiments involving six animals and demonstrated the capability of our MBD-based real time processing (latency <= 100.37 µs) to achieve the same performances of offline spike detection. Conclusions: This methodology can have a significant impact in the development of neuroengineering systems by speeding up the prototyping of various system architectures. We have made all project code files open source, thereby providing free access to fellow scientists interested in the development of neuroengineering systems. : This study addresses the inherent difficulties in the creation of neuroengineering devices for real-time neural signal processing, a task typically characterized by intricate and technically demanding processes. Beneath the substantial hardware advancements in neurotechnology, there is often rather complex low-level code that poses challenges in terms of development, documentation, and long-term maintenance. : We adopted an alternative strategy centered on Model-Based Design (MBD) to simplify the creation of neuroengineering systems and reduce the entry barriers. MBD offers distinct advantages by streamlining the design workflow, from modelling to implementation, thus facilitating the development of intricate systems. A spike detection algorithm has been implemented on a commercially available system based on a Field-Programmable Gate Array (FPGA) that combines neural probe electronics with configurable integrated circuit. The entire process of data handling and data processing was performed within the Simulink environment, with subsequent generation of hardware description language (HDL) code tailored to the FPGA hardware. : The validation was conducted through in vivo experiments involving six animals and demonstrated the capability of our MBD-based real time processing (latency <= 100.37 µs) to achieve the same performances of offline spike detection. : This methodology can have a significant impact in the development of neuroengineering systems by speeding up the prototyping of various system architectures. We have made all project code files open source, thereby providing free access to fellow scientists interested in the development of neuroengineering systems. |
| Author | Care, Marta Di Florio, Mattia Bornat, Yannick Chiappalone, Michela Rosa Cota, Vinicius Buccelli, Stefano |
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| SubjectTerms | Algorithms Codes Computational modeling Computer architecture Data processing Design Field programmable gate arrays Field-Programmable Gate Array (FPGA) Hardware Hardware description languages Hardware design languages HDL coder High density lipoprotein in vivo experiments Information processing Integrated circuits Latency Neural engineering neuroengineering Prototyping Real time Signal processing Signal processing algorithms Software packages Source code Workflow |
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| Title | Enabling Model-Based Design for Real-Time Spike Detection |
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