Phylogenetic Clustering by Linear Integer Programming (PhyCLIP)

Subspecies nomenclature systems of pathogens are increasingly based on sequence data. The use of phylogenetics to identify and differentiate between clusters of genetically similar pathogens is particularly prevalent in virology from the nomenclature of human papillomaviruses to highly pathogenic av...

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Bibliographic Details
Published in:	Molecular biology and evolution Vol. 36; no. 7; pp. 1580 - 1595
Main Authors:	Han, Alvin X, Parker, Edyth, Scholer, Frits, Maurer-Stroh, Sebastian, Russell, Colin A
Format:	Journal Article
Language:	English
Published:	United States Oxford University Press 01.07.2019
Subjects:	Avian flu Clustering Divergence Genetic distance Genetic divergence Genetic Techniques Hemagglutinins Human papillomavirus Influenza A Virus, H5N1 Subtype - genetics Integer programming Linear programming Methods Nomenclature Nomenclatures Pathogens Phylogenetics Phylogeny Programming, Linear Software Subpopulations Thresholds influenza molecular epidemiology nomenclature pathogen phylogenetic clustering
ISSN:	0737-4038, 1537-1719, 1537-1719
Online Access:	Get full text
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