Reorganizing the family Parvoviridae: a revised taxonomy independent of the canonical approach based on host association

Parvoviridae , a diverse family of small single-stranded DNA viruses was established in 1975. It was divided into two subfamilies, Parvovirinae and Densovirinae , in 1993 to accommodate parvoviruses that infect vertebrate and invertebrate animals, respectively. This relatively straightforward segreg...

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Veröffentlicht in:	Archives of virology Jg. 165; H. 9; S. 2133 - 2146
Hauptverfasser:	Pénzes, Judit J., Söderlund-Venermo, Maria, Canuti, Marta, Eis-Hübinger, Anna Maria, Hughes, Joseph, Cotmore, Susan F., Harrach, Balázs
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	Vienna Springer Vienna 01.09.2020 Springer Nature B.V
Schlagworte:	Ambidensovirus Amino acid sequence amino acid sequences Biomedical and Life Sciences Biomedicine Classification Divergence DNA viruses genome Genomes Homology Infectious Diseases Introduced species Invertebrates Medical Microbiology New genera Next-generation sequencing Nucleotide sequence paraphyly Parvoviridae Parvoviruses Penstyldensovirus Phylogeny sequence homology Single-stranded DNA Taxonomic revision taxonomic revisions vertebrates Virology Virology Division News Viruses
ISSN:	0304-8608, 1432-8798, 1432-8798
Online-Zugang:	Volltext
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Abstract	Parvoviridae , a diverse family of small single-stranded DNA viruses was established in 1975. It was divided into two subfamilies, Parvovirinae and Densovirinae , in 1993 to accommodate parvoviruses that infect vertebrate and invertebrate animals, respectively. This relatively straightforward segregation, using host association as the prime criterion for subfamily-level classification, has recently been challenged by the discovery of divergent, vertebrate-infecting parvoviruses, dubbed “chapparvoviruses”, which have proven to be more closely related to viruses in certain Densovirinae genera than to members of the Parvovirinae . Viruses belonging to these genera, namely Brevi -, Hepan - and Penstyldensovirus , are responsible for the unmatched heterogeneity of the subfamily Densovirinae when compared to the Parvovirinae in matters of genome organization, protein sequence homology, and phylogeny. Another genus of Densovirinae , Ambidensovirus , has challenged traditional parvovirus classification, as it includes all newly discovered densoviruses with an ambisense genome organization, which introduces genus-level paraphyly. Lastly, current taxon definition and virus inclusion criteria have significantly limited the classification of certain long-discovered parvoviruses and impedes the classification of some potential family members discovered using high-throughput sequencing methods. Here, we present a new and updated system for parvovirus classification, which includes the introduction of a third subfamily, Hamaparvovirinae , resolves the paraphyly within genus Ambidensovirus , and introduces new genera and species into the subfamily Parvovirinae . These proposals were accepted by the ICTV in 2020 March.
AbstractList	Parvoviridae, a diverse family of small single-stranded DNA viruses was established in 1975. It was divided into two subfamilies, Parvovirinae and Densovirinae, in 1993 to accommodate parvoviruses that infect vertebrate and invertebrate animals, respectively. This relatively straightforward segregation, using host association as the prime criterion for subfamily-level classification, has recently been challenged by the discovery of divergent, vertebrate-infecting parvoviruses, dubbed “chapparvoviruses”, which have proven to be more closely related to viruses in certain Densovirinae genera than to members of the Parvovirinae. Viruses belonging to these genera, namely Brevi-, Hepan- and Penstyldensovirus, are responsible for the unmatched heterogeneity of the subfamily Densovirinae when compared to the Parvovirinae in matters of genome organization, protein sequence homology, and phylogeny. Another genus of Densovirinae, Ambidensovirus, has challenged traditional parvovirus classification, as it includes all newly discovered densoviruses with an ambisense genome organization, which introduces genus-level paraphyly. Lastly, current taxon definition and virus inclusion criteria have significantly limited the classification of certain long-discovered parvoviruses and impedes the classification of some potential family members discovered using high-throughput sequencing methods. Here, we present a new and updated system for parvovirus classification, which includes the introduction of a third subfamily, Hamaparvovirinae, resolves the paraphyly within genus Ambidensovirus, and introduces new genera and species into the subfamily Parvovirinae. These proposals were accepted by the ICTV in 2020 March. Parvoviridae , a diverse family of small single-stranded DNA viruses was established in 1975. It was divided into two subfamilies, Parvovirinae and Densovirinae , in 1993 to accommodate parvoviruses that infect vertebrate and invertebrate animals, respectively. This relatively straightforward segregation, using host association as the prime criterion for subfamily-level classification, has recently been challenged by the discovery of divergent, vertebrate-infecting parvoviruses, dubbed “chapparvoviruses”, which have proven to be more closely related to viruses in certain Densovirinae genera than to members of the Parvovirinae . Viruses belonging to these genera, namely Brevi -, Hepan - and Penstyldensovirus , are responsible for the unmatched heterogeneity of the subfamily Densovirinae when compared to the Parvovirinae in matters of genome organization, protein sequence homology, and phylogeny. Another genus of Densovirinae , Ambidensovirus , has challenged traditional parvovirus classification, as it includes all newly discovered densoviruses with an ambisense genome organization, which introduces genus-level paraphyly. Lastly, current taxon definition and virus inclusion criteria have significantly limited the classification of certain long-discovered parvoviruses and impedes the classification of some potential family members discovered using high-throughput sequencing methods. Here, we present a new and updated system for parvovirus classification, which includes the introduction of a third subfamily, Hamaparvovirinae , resolves the paraphyly within genus Ambidensovirus , and introduces new genera and species into the subfamily Parvovirinae . These proposals were accepted by the ICTV in 2020 March. Parvoviridae, a diverse family of small single-stranded DNA viruses was established in 1975. It was divided into two subfamilies, Parvovirinae and Densovirinae, in 1993 to accommodate parvoviruses that infect vertebrate and invertebrate animals, respectively. This relatively straightforward segregation, using host association as the prime criterion for subfamily-level classification, has recently been challenged by the discovery of divergent, vertebrate-infecting parvoviruses, dubbed "chapparvoviruses", which have proven to be more closely related to viruses in certain Densovirinae genera than to members of the Parvovirinae. Viruses belonging to these genera, namely Brevi-, Hepan- and Penstyldensovirus, are responsible for the unmatched heterogeneity of the subfamily Densovirinae when compared to the Parvovirinae in matters of genome organization, protein sequence homology, and phylogeny. Another genus of Densovirinae, Ambidensovirus, has challenged traditional parvovirus classification, as it includes all newly discovered densoviruses with an ambisense genome organization, which introduces genus-level paraphyly. Lastly, current taxon definition and virus inclusion criteria have significantly limited the classification of certain long-discovered parvoviruses and impedes the classification of some potential family members discovered using high-throughput sequencing methods. Here, we present a new and updated system for parvovirus classification, which includes the introduction of a third subfamily, Hamaparvovirinae, resolves the paraphyly within genus Ambidensovirus, and introduces new genera and species into the subfamily Parvovirinae. These proposals were accepted by the ICTV in 2020 March.Parvoviridae, a diverse family of small single-stranded DNA viruses was established in 1975. It was divided into two subfamilies, Parvovirinae and Densovirinae, in 1993 to accommodate parvoviruses that infect vertebrate and invertebrate animals, respectively. This relatively straightforward segregation, using host association as the prime criterion for subfamily-level classification, has recently been challenged by the discovery of divergent, vertebrate-infecting parvoviruses, dubbed "chapparvoviruses", which have proven to be more closely related to viruses in certain Densovirinae genera than to members of the Parvovirinae. Viruses belonging to these genera, namely Brevi-, Hepan- and Penstyldensovirus, are responsible for the unmatched heterogeneity of the subfamily Densovirinae when compared to the Parvovirinae in matters of genome organization, protein sequence homology, and phylogeny. Another genus of Densovirinae, Ambidensovirus, has challenged traditional parvovirus classification, as it includes all newly discovered densoviruses with an ambisense genome organization, which introduces genus-level paraphyly. Lastly, current taxon definition and virus inclusion criteria have significantly limited the classification of certain long-discovered parvoviruses and impedes the classification of some potential family members discovered using high-throughput sequencing methods. Here, we present a new and updated system for parvovirus classification, which includes the introduction of a third subfamily, Hamaparvovirinae, resolves the paraphyly within genus Ambidensovirus, and introduces new genera and species into the subfamily Parvovirinae. These proposals were accepted by the ICTV in 2020 March.
Author	Eis-Hübinger, Anna Maria Canuti, Marta Cotmore, Susan F. Söderlund-Venermo, Maria Harrach, Balázs Pénzes, Judit J. Hughes, Joseph
Author_xml	– sequence: 1 givenname: Judit J. orcidid: 0000-0002-0366-9004 surname: Pénzes fullname: Pénzes, Judit J. email: judit.penzes@ufl.edu organization: Center for Structural Biology, Department of Biochemistry and Molecular Biology, The McKnight Brain Institute, University of Florida – sequence: 2 givenname: Maria surname: Söderlund-Venermo fullname: Söderlund-Venermo, Maria organization: Department of Virology, University of Helsinki – sequence: 3 givenname: Marta surname: Canuti fullname: Canuti, Marta organization: Department of Biology, Memorial University of Newfoundland – sequence: 4 givenname: Anna Maria surname: Eis-Hübinger fullname: Eis-Hübinger, Anna Maria organization: Institute for Virology, University of Bonn Medical Centre – sequence: 5 givenname: Joseph surname: Hughes fullname: Hughes, Joseph organization: MRC-University of Glasgow Centre for Virus Research – sequence: 6 givenname: Susan F. surname: Cotmore fullname: Cotmore, Susan F. organization: Department of Laboratory Medicine, Yale University School of Medicine – sequence: 7 givenname: Balázs surname: Harrach fullname: Harrach, Balázs organization: Centre for Agricultural Research, Institute for Veterinary Medical Research
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Copyright	Springer-Verlag GmbH Austria, part of Springer Nature 2020 Springer-Verlag GmbH Austria, part of Springer Nature 2020.
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Snippet	Parvoviridae , a diverse family of small single-stranded DNA viruses was established in 1975. It was divided into two subfamilies, Parvovirinae and... Parvoviridae, a diverse family of small single-stranded DNA viruses was established in 1975. It was divided into two subfamilies, Parvovirinae and...
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SubjectTerms	Ambidensovirus Amino acid sequence amino acid sequences Biomedical and Life Sciences Biomedicine Classification Divergence DNA viruses genome Genomes Homology Infectious Diseases Introduced species Invertebrates Medical Microbiology New genera Next-generation sequencing Nucleotide sequence paraphyly Parvoviridae Parvoviruses Penstyldensovirus Phylogeny sequence homology Single-stranded DNA Taxonomic revision taxonomic revisions vertebrates Virology Virology Division News Viruses
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Title	Reorganizing the family Parvoviridae: a revised taxonomy independent of the canonical approach based on host association
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