Consequences of habitat fragmentation on genetic structure of Chamaedorea alternans (Arecaceae) palm populations in the tropical rain forests of Los Tuxtlas, Veracruz, Mexico

Chamaedorea alternans is a palm species that has suffered from selective extraction, and habitat loss. We collected 11 populations from fragmented and conserved forest. We assess genetic variation of C. alternans, genetic exchange, differentiation, bottlenecks, effective population size and signals...

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Vydané v:Revista mexicana de biodiversidad Ročník 87; číslo 3; s. 990 - 1001
Hlavní autori: Peñaloza-Ramírez, Juan Manuel, Aguilar-Amezquita, Bernardo, Núñez-Farfán, Juan, Pérez-Nasser, Nidia, Albarrán-Lara, Ana Luisa, Oyama, Ken
Médium: Journal Article
Jazyk:English
Vydavateľské údaje: Elsevier España, S.L.U 01.09.2016
Instituto de Biología
Universidad Nacional Autónoma de México
Predmet:
Análisis de agrupamiento bayesiano
Bayesian cluster analysis
Biodiversity Conservation
Bosque tropical
Chamaedorea
Cuellos de botella
deforestation
Diversidad genética
effective population size
Genetic bottlenecks
Genetic diversity
genetic recombination
genetic variation
habitat destruction
habitat fragmentation
inbreeding
landscapes
logging
Mexico
natural selection
pollination
Prueba de selección natural
Test of natural selection
trees
Tropical forest
tropical rain forests
Mexico
Genetic bottlenecks
Diversidad genética
Análisis de agrupamiento bayesiano
Tropical forest
Genetic diversity
Bayesian cluster analysis
Bosque tropical
Cuellos de botella
Prueba de selección natural
Test of natural selection
ISSN:1870-3453, 2007-8706, 2007-8706
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Abstract Chamaedorea alternans is a palm species that has suffered from selective extraction, and habitat loss. We collected 11 populations from fragmented and conserved forest. We assess genetic variation of C. alternans, genetic exchange, differentiation, bottlenecks, effective population size and signals of natural selection. Genetic diversity was higher in conserved than in fragmented forest but not significant. Fragmentation did not play a significant role in genetic diversity, possibly due to the populations heterogeneity. C. alternans has been subject to a pronounced isolation of trees as a product of logging, thus raising inbreeding. Bayesian clustering show a trend towards an increased structuring over the course of generations but also, indicates that populations have recently gone through a bottleneck. The bottleneck following deforestation was not severe enough to lower the effective size, this could lead to high standing genetic diversity, providing a buffer against genetic erosion. We observed directional and balancing selection in C. alternans. Maintenance of variability and increased differentiation signify that their populations have been subject to a differential selective pressure at the ecological and the landscape level, combined effect could lead to disturb pollination and dispersion processes, modifying in the long term the effective population size. Chamaedorea alternans es una especie de palma que ha sufrido extracción selectiva y pérdida del hábitat. Se colectaron 11 poblaciones de bosques fragmentados y conservados. Se calculó la variación genética de C. alternans, intercambio genético, diferenciación, cuellos de botella, el tamaño efectivo y las señales de selección natural. La diversidad genética fue mayor en el bosque conservado que en el fragmentado, pero no fue significativa posiblemente debido a la heterogeneidad de las poblaciones. La fragmentación no ha desempeñado un papel importante en la diversidad genética. C. alternans ha sido objeto de un marcado aislamiento de árboles, elevando así los coeficientes de endogamia. El agrupamiento bayesiano indica una tendencia hacia la estructuración con el curso de las generaciones, incluso, muestra evidencias de poblaciones que han sufrido cuellos de botella. Si el cuello de botella no fue tan severo para reducir el tamaño efectivo, esto pudo resultar en una alta diversidad genética, sirviendo como buffer contra la erosión genética. Observamos selección direccional y balanceadora en C. alternans. La disminución y el mantenimiento de la variabilidad y el aumento de la diferenciación significan que sus poblaciones han sido objeto de una presión diferencial a nivel ecológico y a nivel de paisaje; el efecto combinado podría llevar a alterar los procesos de polinización y dispersión, modificando a largo plazo el tamaño de la población.
AbstractList Chamaedorea alternans is a palm species that has suffered from selective extraction, and habitat loss. We collected 11 populations from fragmented and conserved forest. We assess genetic variation of C. alternans, genetic exchange, differentiation, bottlenecks, effective population size and signals of natural selection. Genetic diversity was higher in conserved than in fragmented forest but not significant. Fragmentation did not play a significant role in genetic diversity, possibly due to the populations heterogeneity. C. alternans has been subject to a pronounced isolation of trees as a product of logging, thus raising inbreeding. Bayesian clustering show a trend towards an increased structuring over the course of generations but also, indicates that populations have recently gone through a bottleneck. The bottleneck following deforestation was not severe enough to lower the effective size, this could lead to high standing genetic diversity, providing a buffer against genetic erosion. We observed directional and balancing selection in C. alternans. Maintenance of variability and increased differentiation signify that their populations have been subject to a differential selective pressure at the ecological and the landscape level, combined effect could lead to disturb pollination and dispersion processes, modifying in the long term the effective population size.
Chamaedorea alternans is a palm species that has suffered from selective extraction, and habitat loss. We collected 11 populations from fragmented and conserved forest. We assess genetic variation of C. alternans, genetic exchange, differentiation, bottlenecks, effective population size and signals of natural selection. Genetic diversity was higher in conserved than in fragmented forest but not significant. Fragmentation did not play a significant role in genetic diversity, possibly due to the populations heterogeneity. C. alternans has been subject to a pronounced isolation of trees as a product of logging, thus raising inbreeding. Bayesian clustering show a trend towards an increased structuring over the course of generations but also, indicates that populations have recently gone through a bottleneck. The bottleneck following deforestation was not severe enough to lower the effective size, this could lead to high standing genetic diversity, providing a buffer against genetic erosion. We observed directional and balancing selection in C. alternans. Maintenance of variability and increased differentiation signify that their populations have been subject to a differential selective pressure at the ecological and the landscape level, combined effect could lead to disturb pollination and dispersion processes, modifying in the long term the effective population size. Chamaedorea alternans es una especie de palma que ha sufrido extracción selectiva y pérdida del hábitat. Se colectaron 11 poblaciones de bosques fragmentados y conservados. Se calculó la variación genética de C. alternans, intercambio genético, diferenciación, cuellos de botella, el tamaño efectivo y las señales de selección natural. La diversidad genética fue mayor en el bosque conservado que en el fragmentado, pero no fue significativa posiblemente debido a la heterogeneidad de las poblaciones. La fragmentación no ha desempeñado un papel importante en la diversidad genética. C. alternans ha sido objeto de un marcado aislamiento de árboles, elevando así los coeficientes de endogamia. El agrupamiento bayesiano indica una tendencia hacia la estructuración con el curso de las generaciones, incluso, muestra evidencias de poblaciones que han sufrido cuellos de botella. Si el cuello de botella no fue tan severo para reducir el tamaño efectivo, esto pudo resultar en una alta diversidad genética, sirviendo como buffer contra la erosión genética. Observamos selección direccional y balanceadora en C. alternans. La disminución y el mantenimiento de la variabilidad y el aumento de la diferenciación significan que sus poblaciones han sido objeto de una presión diferencial a nivel ecológico y a nivel de paisaje; el efecto combinado podría llevar a alterar los procesos de polinización y dispersión, modificando a largo plazo el tamaño de la población.
Author Oyama, Ken
Aguilar-Amezquita, Bernardo
Núñez-Farfán, Juan
Peñaloza-Ramírez, Juan Manuel
Pérez-Nasser, Nidia
Albarrán-Lara, Ana Luisa
AuthorAffiliation University of California
Universidad Nacional Autónoma de México
AuthorAffiliation_xml – name: University of California
– name: Universidad Nacional Autónoma de México
Author_xml – sequence: 1
  givenname: Juan Manuel
  surname: Peñaloza-Ramírez
  fullname: Peñaloza-Ramírez, Juan Manuel
  email: juanmanuelpenalozaramirez@gmail.com
  organization: Laboratorio de Ecología Genética, Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México, Antigua Carretera a Pátzcuaro Núm. 8701, Col. Ex-Hacienda la Huerta, 58190 Morelia, Michoacán, Mexico
– sequence: 2
  givenname: Bernardo
  surname: Aguilar-Amezquita
  fullname: Aguilar-Amezquita, Bernardo
  organization: Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, Apartado postal 70-275, 04510 Ciudad de México, Mexico
– sequence: 3
  givenname: Juan
  surname: Núñez-Farfán
  fullname: Núñez-Farfán, Juan
  organization: Departamento de Ecología Evolutiva, Instituto de Ecología, Universidad Nacional Autónoma de México, Apartado postal 70-275, 04510 Ciudad de México, Mexico
– sequence: 4
  givenname: Nidia
  surname: Pérez-Nasser
  fullname: Pérez-Nasser, Nidia
  organization: Herbario Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México, Antigua Carretera a Pátzcuaro Núm. 8701, Col. Ex-Hacienda la Huerta, 58190 Morelia, Michoacán, Mexico
– sequence: 5
  givenname: Ana Luisa
  surname: Albarrán-Lara
  fullname: Albarrán-Lara, Ana Luisa
  organization: Laboratorio de Ecología Genética, Instituto de Investigaciones en Ecosistemas y Sustentabilidad, Universidad Nacional Autónoma de México, Antigua Carretera a Pátzcuaro Núm. 8701, Col. Ex-Hacienda la Huerta, 58190 Morelia, Michoacán, Mexico
– sequence: 6
  givenname: Ken
  surname: Oyama
  fullname: Oyama, Ken
  organization: Escuela Nacional de Estudios Superiores Unidad Morelia, Universidad Nacional Autónoma de México, Antigua Carretera a Pátzcuaro Núm. 8701, Col. Ex-Hacienda la Huerta, 58190 Morelia, Michoacán, Mexico
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ContentType Journal Article
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DocumentTitleAlternate Consecuencias de la fragmentación del hábitat sobre la estructura genética de las poblaciones de la palma Chamaedorea alternans (Arecaceae) en el bosque tropical lluvioso de Los Tuxtlas, Veracruz, México
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Issue 3
Keywords Genetic bottlenecks
Diversidad genética
Análisis de agrupamiento bayesiano
Tropical forest
Genetic diversity
Bayesian cluster analysis
Bosque tropical
Cuellos de botella
Prueba de selección natural
Test of natural selection
Language English
License This is an open access article under the CC BY-NC-ND license.
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Snippet Chamaedorea alternans is a palm species that has suffered from selective extraction, and habitat loss. We collected 11 populations from fragmented and...
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SubjectTerms Análisis de agrupamiento bayesiano
Bayesian cluster analysis
Biodiversity Conservation
Bosque tropical
Chamaedorea
Cuellos de botella
deforestation
Diversidad genética
effective population size
Genetic bottlenecks
Genetic diversity
genetic recombination
genetic variation
habitat destruction
habitat fragmentation
inbreeding
landscapes
logging
Mexico
natural selection
pollination
Prueba de selección natural
Test of natural selection
trees
Tropical forest
tropical rain forests
Title Consequences of habitat fragmentation on genetic structure of Chamaedorea alternans (Arecaceae) palm populations in the tropical rain forests of Los Tuxtlas, Veracruz, Mexico
URI https://dx.doi.org/10.1016/j.rmb.2016.07.004
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