Harnessing tissue-specific genome editing in plants through CRISPR/Cas system: current state and future prospects
Main conclusion In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement. CRISPR/Cas is a powerful genome-editing to...
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| Veröffentlicht in: | Planta Jg. 255; H. 1; S. 28 |
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| Sprache: | Englisch |
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Springer Berlin Heidelberg
01.01.2022
Springer Nature B.V |
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| ISSN: | 0032-0935, 1432-2048, 1432-2048 |
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| Abstract | Main conclusion
In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement.
CRISPR/Cas is a powerful genome-editing tool with a wide range of applications for the genetic improvement of crops. However, the constitutive genome editing of vital genes is often associated with pleiotropic effects on other genes, needless metabolic burden, or interference in the cellular machinery. Tissue-specific genome editing (TSGE), on the other hand, enables researchers to study those genes in specific cells, tissues, or organs without disturbing neighboring groups of cells. Until recently, there was only limited proof of the TSGE concept, where the CRISPR-TSKO tool was successfully used in
Arabidopsis
, tomato, and cotton, laying a solid foundation for crop improvement. In this review, we have laid out valuable insights into the concept and application of TSGE on relatively unexplored areas such as grain trait improvement under favorable or unfavorable conditions. We also enlisted some of the prominent tissue-specific promoters and described the procedure of their isolation with several TSGE promoter expression systems in detail. Moreover, we highlighted potential negative regulatory genes that could be targeted through TSGE using tissue-specific promoters. In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement. |
|---|---|
| AbstractList | Main conclusion
In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement.
CRISPR/Cas is a powerful genome-editing tool with a wide range of applications for the genetic improvement of crops. However, the constitutive genome editing of vital genes is often associated with pleiotropic effects on other genes, needless metabolic burden, or interference in the cellular machinery. Tissue-specific genome editing (TSGE), on the other hand, enables researchers to study those genes in specific cells, tissues, or organs without disturbing neighboring groups of cells. Until recently, there was only limited proof of the TSGE concept, where the CRISPR-TSKO tool was successfully used in
Arabidopsis
, tomato, and cotton, laying a solid foundation for crop improvement. In this review, we have laid out valuable insights into the concept and application of TSGE on relatively unexplored areas such as grain trait improvement under favorable or unfavorable conditions. We also enlisted some of the prominent tissue-specific promoters and described the procedure of their isolation with several TSGE promoter expression systems in detail. Moreover, we highlighted potential negative regulatory genes that could be targeted through TSGE using tissue-specific promoters. In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement. MAIN CONCLUSION: In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement. CRISPR/Cas is a powerful genome-editing tool with a wide range of applications for the genetic improvement of crops. However, the constitutive genome editing of vital genes is often associated with pleiotropic effects on other genes, needless metabolic burden, or interference in the cellular machinery. Tissue-specific genome editing (TSGE), on the other hand, enables researchers to study those genes in specific cells, tissues, or organs without disturbing neighboring groups of cells. Until recently, there was only limited proof of the TSGE concept, where the CRISPR-TSKO tool was successfully used in Arabidopsis, tomato, and cotton, laying a solid foundation for crop improvement. In this review, we have laid out valuable insights into the concept and application of TSGE on relatively unexplored areas such as grain trait improvement under favorable or unfavorable conditions. We also enlisted some of the prominent tissue-specific promoters and described the procedure of their isolation with several TSGE promoter expression systems in detail. Moreover, we highlighted potential negative regulatory genes that could be targeted through TSGE using tissue-specific promoters. In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement. In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement. CRISPR/Cas is a powerful genome-editing tool with a wide range of applications for the genetic improvement of crops. However, the constitutive genome editing of vital genes is often associated with pleiotropic effects on other genes, needless metabolic burden, or interference in the cellular machinery. Tissue-specific genome editing (TSGE), on the other hand, enables researchers to study those genes in specific cells, tissues, or organs without disturbing neighboring groups of cells. Until recently, there was only limited proof of the TSGE concept, where the CRISPR-TSKO tool was successfully used in Arabidopsis, tomato, and cotton, laying a solid foundation for crop improvement. In this review, we have laid out valuable insights into the concept and application of TSGE on relatively unexplored areas such as grain trait improvement under favorable or unfavorable conditions. We also enlisted some of the prominent tissue-specific promoters and described the procedure of their isolation with several TSGE promoter expression systems in detail. Moreover, we highlighted potential negative regulatory genes that could be targeted through TSGE using tissue-specific promoters. In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement.MAIN CONCLUSIONIn a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement. CRISPR/Cas is a powerful genome-editing tool with a wide range of applications for the genetic improvement of crops. However, the constitutive genome editing of vital genes is often associated with pleiotropic effects on other genes, needless metabolic burden, or interference in the cellular machinery. Tissue-specific genome editing (TSGE), on the other hand, enables researchers to study those genes in specific cells, tissues, or organs without disturbing neighboring groups of cells. Until recently, there was only limited proof of the TSGE concept, where the CRISPR-TSKO tool was successfully used in Arabidopsis, tomato, and cotton, laying a solid foundation for crop improvement. In this review, we have laid out valuable insights into the concept and application of TSGE on relatively unexplored areas such as grain trait improvement under favorable or unfavorable conditions. We also enlisted some of the prominent tissue-specific promoters and described the procedure of their isolation with several TSGE promoter expression systems in detail. Moreover, we highlighted potential negative regulatory genes that could be targeted through TSGE using tissue-specific promoters. In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement. Main conclusionIn a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement.CRISPR/Cas is a powerful genome-editing tool with a wide range of applications for the genetic improvement of crops. However, the constitutive genome editing of vital genes is often associated with pleiotropic effects on other genes, needless metabolic burden, or interference in the cellular machinery. Tissue-specific genome editing (TSGE), on the other hand, enables researchers to study those genes in specific cells, tissues, or organs without disturbing neighboring groups of cells. Until recently, there was only limited proof of the TSGE concept, where the CRISPR-TSKO tool was successfully used in Arabidopsis, tomato, and cotton, laying a solid foundation for crop improvement. In this review, we have laid out valuable insights into the concept and application of TSGE on relatively unexplored areas such as grain trait improvement under favorable or unfavorable conditions. We also enlisted some of the prominent tissue-specific promoters and described the procedure of their isolation with several TSGE promoter expression systems in detail. Moreover, we highlighted potential negative regulatory genes that could be targeted through TSGE using tissue-specific promoters. In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement. In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement. CRISPR/Cas is a powerful genome-editing tool with a wide range of applications for the genetic improvement of crops. However, the constitutive genome editing of vital genes is often associated with pleiotropic effects on other genes, needless metabolic burden, or interference in the cellular machinery. Tissue-specific genome editing (TSGE), on the other hand, enables researchers to study those genes in specific cells, tissues, or organs without disturbing neighboring groups of cells. Until recently, there was only limited proof of the TSGE concept, where the CRISPR-TSKO tool was successfully used in Arabidopsis, tomato, and cotton, laying a solid foundation for crop improvement. In this review, we have laid out valuable insights into the concept and application of TSGE on relatively unexplored areas such as grain trait improvement under favorable or unfavorable conditions. We also enlisted some of the prominent tissue-specific promoters and described the procedure of their isolation with several TSGE promoter expression systems in detail. Moreover, we highlighted potential negative regulatory genes that could be targeted through TSGE using tissue-specific promoters. In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with constitutive GE such as off target and pleotropic effects for targeted crop improvement. |
| ArticleNumber | 28 |
| Author | Chikkaputtaiah, Channakeshavaiah Chowdhury, Naimisha Sharma, Monica Singha, Dhanawantari L. Das, Debajit Maharana, Jitendra Sarki, Yogita N. |
| Author_xml | – sequence: 1 givenname: Dhanawantari L. orcidid: 0000-0001-5981-2933 surname: Singha fullname: Singha, Dhanawantari L. email: dhanawantarisingha@gmail.com organization: Biological Sciences and Technology Division, CSIR-North East Institute of Science and Technology (CSIR-NEIST) – sequence: 2 givenname: Debajit orcidid: 0000-0001-7793-861X surname: Das fullname: Das, Debajit organization: Biological Sciences and Technology Division, CSIR-North East Institute of Science and Technology (CSIR-NEIST) – sequence: 3 givenname: Yogita N. orcidid: 0000-0002-7905-7362 surname: Sarki fullname: Sarki, Yogita N. organization: Biological Sciences and Technology Division, CSIR-North East Institute of Science and Technology (CSIR-NEIST), Academy of Scientific and Innovative Research (AcSIR) – sequence: 4 givenname: Naimisha orcidid: 0000-0002-5043-0776 surname: Chowdhury fullname: Chowdhury, Naimisha organization: Biological Sciences and Technology Division, CSIR-North East Institute of Science and Technology (CSIR-NEIST) – sequence: 5 givenname: Monica orcidid: 0000-0001-6204-3733 surname: Sharma fullname: Sharma, Monica organization: Biological Sciences and Technology Division, CSIR-North East Institute of Science and Technology (CSIR-NEIST) – sequence: 6 givenname: Jitendra orcidid: 0000-0003-4628-5956 surname: Maharana fullname: Maharana, Jitendra organization: Distributed Information Centre (DIC), Department of Agricultural Biotechnology, Assam Agricultural University, Institute of Biological Chemistry, Academia Sinica – sequence: 7 givenname: Channakeshavaiah orcidid: 0000-0001-7329-8643 surname: Chikkaputtaiah fullname: Chikkaputtaiah, Channakeshavaiah email: channakeshav@neist.res.in organization: Biological Sciences and Technology Division, CSIR-North East Institute of Science and Technology (CSIR-NEIST), Academy of Scientific and Innovative Research (AcSIR) |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/34962611$$D View this record in MEDLINE/PubMed |
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| CitedBy_id | crossref_primary_10_1093_jxb_erae147 crossref_primary_10_1111_pbi_14533 crossref_primary_10_3389_fpls_2022_1042828 crossref_primary_10_3390_agriculture15010029 crossref_primary_10_1186_s42397_023_00140_3 crossref_primary_10_3390_plants11040524 crossref_primary_10_3390_cimb46100659 crossref_primary_10_1007_s00425_025_04747_5 crossref_primary_10_1371_journal_pgen_1011438 crossref_primary_10_3390_cimb46120865 crossref_primary_10_1007_s00425_022_03894_3 crossref_primary_10_1111_aab_70011 crossref_primary_10_1007_s12298_024_01423_y crossref_primary_10_3389_fgeed_2023_1094965 crossref_primary_10_54112_bbasr_v2023i1_37 crossref_primary_10_1016_j_sajb_2024_07_038 |
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| ContentType | Journal Article |
| Copyright | The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2021 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2021. |
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| DOI | 10.1007/s00425-021-03811-0 |
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| ISSN | 0032-0935 1432-2048 |
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| Issue | 1 |
| Keywords | CRISPR-TSKO Tissue-specific promoters (TSPs) Abiotic stress Tissue-specific genome editing (TSGE) Crop improvement Biotic stress CRISPR-Cas9/Cas12a |
| Language | English |
| License | 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature. |
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| PublicationDate | 2022-01-01 |
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| PublicationSubtitle | An International Journal of Plant Biology |
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| PublicationYear | 2022 |
| Publisher | Springer Berlin Heidelberg Springer Nature B.V |
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In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle... In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle associated with... Main conclusionIn a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle... MAIN CONCLUSION: In a nutshell, tissue-specific CRISPR/Cas genome editing is the most promising approach for crop improvement which can bypass the hurdle... |
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| SubjectTerms | Agriculture Arabidopsis Biomedical and Life Sciences Cotton CRISPR CRISPR-Cas Systems - genetics CRISPR/Cas-mediated gene editing to ensure product quality and plant performance Crop improvement Crops Ecology Forestry Gene Editing Genes genetic improvement Genome editing Genome, Plant - genetics Genomes Life Sciences Plant Breeding Plant Sciences Plants, Genetically Modified - genetics Promoters Review Tissues Tomatoes |
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| Title | Harnessing tissue-specific genome editing in plants through CRISPR/Cas system: current state and future prospects |
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