Phylogenetic analysis and molecular genetic characteristics of West Nile virus lineage 2 isolates circulating in the Russian Federation

Since its initial detection in Africa, the West Nile virus has disseminated widely across all continents, becoming endemic in numerous countries, including the Russian Federation. A substantial expansion of the West Nile virus range was observed in the European part of the Russian territory in 1999....

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Vydáno v:	Virus genes Ročník 60; číslo 4; s. 370 - 376
Hlavní autoři:	Antonov, A. S., Shpak, I. M., Ustinov, D. V., Izhberdeeva, M. P., Guseva, A. N., Galkina, A. Y., Borodai, N. V., Udovichenko, S. K., Toporkov, A. V.
Médium:	Journal Article
Jazyk:	angličtina
Vydáno:	New York Springer US 01.08.2024 Springer Nature B.V
Témata:	Africa Biomedical and Life Sciences Biomedicine data collection Epidemiology Genetic analysis Genetic variability genetic variation genome Genomic analysis Medical Microbiology Original Paper pathogens Phylogenetics Phylogeny Plant Sciences Population genetics Population studies Russia Virology viruses West Nile fever West Nile virus Russia Africa Phylogenetic analysis Sequencing West Nile virus Lineage 2
ISSN:	0920-8569, 1572-994X, 1572-994X
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Abstract	Since its initial detection in Africa, the West Nile virus has disseminated widely across all continents, becoming endemic in numerous countries, including the Russian Federation. A substantial expansion of the West Nile virus range was observed in the European part of the Russian territory in 1999. In light of this epidemiological trend, research endeavours focusing on monitoring West Nile virus circulation activity in endemic regions of the country have gained paramount significance. A substantial dataset has been accrued from 2007 onwards regarding genomic variability and dissemination dynamics across the country throughout the entire monitoring period for the West Nile fever pathogen. The objective of this study was to characterise West Nile virus isolates that have been circulating in the Russian Federation and identify their molecular and genetic characteristics. A phylogenetic analysis of 55 complete genome sequences revealed that the West Nile virus population within the Russian Federation is genetically heterogeneous and is represented by four major clades. One of these clades is currently exhibiting extensive spread into new regions of the country.
AbstractList	Since its initial detection in Africa, the West Nile virus has disseminated widely across all continents, becoming endemic in numerous countries, including the Russian Federation. A substantial expansion of the West Nile virus range was observed in the European part of the Russian territory in 1999. In light of this epidemiological trend, research endeavours focusing on monitoring West Nile virus circulation activity in endemic regions of the country have gained paramount significance. A substantial dataset has been accrued from 2007 onwards regarding genomic variability and dissemination dynamics across the country throughout the entire monitoring period for the West Nile fever pathogen. The objective of this study was to characterise West Nile virus isolates that have been circulating in the Russian Federation and identify their molecular and genetic characteristics. A phylogenetic analysis of 55 complete genome sequences revealed that the West Nile virus population within the Russian Federation is genetically heterogeneous and is represented by four major clades. One of these clades is currently exhibiting extensive spread into new regions of the country. Since its initial detection in Africa, the West Nile virus has disseminated widely across all continents, becoming endemic in numerous countries, including the Russian Federation. A substantial expansion of the West Nile virus range was observed in the European part of the Russian territory in 1999. In light of this epidemiological trend, research endeavours focusing on monitoring West Nile virus circulation activity in endemic regions of the country have gained paramount significance. A substantial dataset has been accrued from 2007 onwards regarding genomic variability and dissemination dynamics across the country throughout the entire monitoring period for the West Nile fever pathogen. The objective of this study was to characterise West Nile virus isolates that have been circulating in the Russian Federation and identify their molecular and genetic characteristics. A phylogenetic analysis of 55 complete genome sequences revealed that the West Nile virus population within the Russian Federation is genetically heterogeneous and is represented by four major clades. One of these clades is currently exhibiting extensive spread into new regions of the country.Since its initial detection in Africa, the West Nile virus has disseminated widely across all continents, becoming endemic in numerous countries, including the Russian Federation. A substantial expansion of the West Nile virus range was observed in the European part of the Russian territory in 1999. In light of this epidemiological trend, research endeavours focusing on monitoring West Nile virus circulation activity in endemic regions of the country have gained paramount significance. A substantial dataset has been accrued from 2007 onwards regarding genomic variability and dissemination dynamics across the country throughout the entire monitoring period for the West Nile fever pathogen. The objective of this study was to characterise West Nile virus isolates that have been circulating in the Russian Federation and identify their molecular and genetic characteristics. A phylogenetic analysis of 55 complete genome sequences revealed that the West Nile virus population within the Russian Federation is genetically heterogeneous and is represented by four major clades. One of these clades is currently exhibiting extensive spread into new regions of the country.
Author	Galkina, A. Y. Guseva, A. N. Shpak, I. M. Toporkov, A. V. Borodai, N. V. Ustinov, D. V. Udovichenko, S. K. Antonov, A. S. Izhberdeeva, M. P.
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Cites_doi	10.1093/bioinformatics/btp324 10.1093/nar/gkab301 10.1371/journal.pntd.0006078 10.3390/pathogens9070589 10.1093/gigascience/giab008 10.1128/JVI.01963-10 10.1128/mSystems.00039-15 10.1093/molbev/msaa015 10.1093/molbev/mst010 10.1006/viro.2002.1449 10.4269/ajtmh.13-0405 10.1016/s0042-6822(03)00536-1 10.1093/bioinformatics/btp698 10.1016/j.meegid.2015.03.018 10.14806/ej.17.1.200 10.1093/ve/veaa087 10.3201/eid1204.051379 10.3201/eid1603.091033 10.1089/cmb.2013.0084 10.1007/978-3-7091-0572-6_7 10.36233/0372-9311-85
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SubjectTerms	Africa Biomedical and Life Sciences Biomedicine data collection Epidemiology Genetic analysis Genetic variability genetic variation genome Genomic analysis Medical Microbiology Original Paper pathogens Phylogenetics Phylogeny Plant Sciences Population genetics Population studies Russia Virology viruses West Nile fever West Nile virus
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Title	Phylogenetic analysis and molecular genetic characteristics of West Nile virus lineage 2 isolates circulating in the Russian Federation
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