Snakemake—a scalable bioinformatics workflow engine
Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. It is the first system to support the use of automatically inferred mul...
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| Vydané v: | Bioinformatics (Oxford, England) Ročník 28; číslo 19; s. 2520 - 2522 |
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| Hlavní autori: | , |
| Médium: | Journal Article |
| Jazyk: | English |
| Vydavateľské údaje: |
Oxford
Oxford University Press
01.10.2012
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| Predmet: | |
| ISSN: | 1367-4803, 1367-4811, 1367-4811 |
| On-line prístup: | Získať plný text |
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| Abstract | Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. It is the first system to support the use of automatically inferred multiple named wildcards (or variables) in input and output filenames.
Availability: http://snakemake.googlecode.com.
Contact: johannes.koester@uni-due.de |
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| AbstractList | Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. It is the first system to support the use of automatically inferred multiple named wildcards (or variables) in input and output filenames.SUMMARYSnakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. It is the first system to support the use of automatically inferred multiple named wildcards (or variables) in input and output filenames.http://snakemake.googlecode.com.AVAILABILITYhttp://snakemake.googlecode.com.johannes.koester@uni-due.de.CONTACTjohannes.koester@uni-due.de. Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. It is the first system to support the use of automatically inferred multiple named wildcards (or variables) in input and output filenames. http://snakemake.googlecode.com. johannes.koester@uni-due.de. Snakemake is a workflow engine that provides a readable Python-based workflow definition language and a powerful execution environment that scales from single-core workstations to compute clusters without modifying the workflow. It is the first system to support the use of automatically inferred multiple named wildcards (or variables) in input and output filenames. Availability: http://snakemake.googlecode.com. Contact: johannes.koester@uni-due.de |
| Author | Köster, Johannes Rahmann, Sven |
| Author_xml | – sequence: 1 givenname: Johannes surname: Köster fullname: Köster, Johannes – sequence: 2 givenname: Sven surname: Rahmann fullname: Rahmann, Sven |
| BackLink | http://pascal-francis.inist.fr/vibad/index.php?action=getRecordDetail&idt=26407959$$DView record in Pascal Francis https://www.ncbi.nlm.nih.gov/pubmed/22908215$$D View this record in MEDLINE/PubMed |
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| Cites_doi | 10.1038/nmeth.1809 10.1093/bioinformatics/btp324 10.1101/gr.1363103 10.1038/nrg2841 10.1093/bioinformatics/btq524 10.1093/bioinformatics/btp352 10.1186/gb-2010-11-8-r86 10.1093/bioinformatics/bth361 10.1093/bioinformatics/bts167 10.1002/1097-024X(200009)30:11<1203::AID-SPE338>3.0.CO;2-N 10.1109/MCSE.2007.55 10.1186/1471-2105-5-40 |
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| References | Goecks (2023012513143574900_bts480-B2) 2010; 11 Taura (2023012513143574900_bts480-B15) 2010 Oinn (2023012513143574900_bts480-B10) 2004; 20 Stallman (2023012513143574900_bts480-B13) 1991 Li (2023012513143574900_bts480-B8) 2009; 25 Gansner (2023012513143574900_bts480-B1) 2000; 30 Goodstadt (2023012513143574900_bts480-B3) 2010; 26 Tanaka (2023012513143574900_bts480-B14) 2010 Halbritter (2023012513143574900_bts480-B4) 2011; 9 Li (2023012513143574900_bts480-B7) 2009; 25 Shah (2023012513143574900_bts480-B12) 2004; 5 Meyerson (2023012513143574900_bts480-B9) 2010; 11 Sadedin (2023012513143574900_bts480-B11) 2012; 28 Hoon (2023012513143574900_bts480-B5) 2003; 13 Hunter (2023012513143574900_bts480-B6) 2007; 9 29788404 - Bioinformatics. 2018 Oct 15;34(20):3600 |
| References_xml | – volume: 9 start-page: 7 year: 2011 ident: 2023012513143574900_bts480-B4 article-title: GeneProf: analysis of high-throughput sequencing experiments publication-title: Nat. Methods doi: 10.1038/nmeth.1809 – volume: 25 start-page: 1754 year: 2009 ident: 2023012513143574900_bts480-B7 article-title: Fast and accurate short read alignment with Burrows–Wheeler transform publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp324 – volume: 13 start-page: 1904 year: 2003 ident: 2023012513143574900_bts480-B5 article-title: Biopipe: a flexible framework for protocol-based bioinformatics analysis publication-title: Genome Res. doi: 10.1101/gr.1363103 – volume: 11 start-page: 685 year: 2010 ident: 2023012513143574900_bts480-B9 article-title: Advances in understanding cancer genomes through second-generation sequencing publication-title: Nat. Rev. Genet. doi: 10.1038/nrg2841 – volume: 26 start-page: 2778 year: 2010 ident: 2023012513143574900_bts480-B3 article-title: Ruffus: a lightweight Python library for computational pipelines publication-title: Bioinformatics doi: 10.1093/bioinformatics/btq524 – volume-title: GNU Make—A Program for Directing Recompilation year: 1991 ident: 2023012513143574900_bts480-B13 – volume: 25 start-page: 2078 year: 2009 ident: 2023012513143574900_bts480-B8 article-title: The sequence Alignment/Map format and SAMtools publication-title: Bioinformatics doi: 10.1093/bioinformatics/btp352 – volume: 11 start-page: R86 year: 2010 ident: 2023012513143574900_bts480-B2 article-title: Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences publication-title: Genome Biol. doi: 10.1186/gb-2010-11-8-r86 – volume: 20 start-page: 3045 year: 2004 ident: 2023012513143574900_bts480-B10 article-title: Taverna: a tool for the composition and enactment of bioinformatics workflows publication-title: Bioinformatics doi: 10.1093/bioinformatics/bth361 – volume: 28 start-page: 1525 year: 2012 ident: 2023012513143574900_bts480-B11 article-title: Bpipe: a tool for running and managing bioinformatics pipelines publication-title: Bioinformatics doi: 10.1093/bioinformatics/bts167 – start-page: 356 volume-title: HPDC’10, ACM year: 2010 ident: 2023012513143574900_bts480-B14 article-title: Pwrake: a parallel and distributed flexible workflow management tool for wide-area data intensive computing – year: 2010 ident: 2023012513143574900_bts480-B15 article-title: Design and Implementation of {GXP} Make – A Workflow System Based on Make publication-title: In IEEE International Conference on eScience – volume: 30 start-page: 1203 year: 2000 ident: 2023012513143574900_bts480-B1 article-title: An open graph visualization system and its applications to software engineering publication-title: Software Pract Exper doi: 10.1002/1097-024X(200009)30:11<1203::AID-SPE338>3.0.CO;2-N – volume: 9 start-page: 90 year: 2007 ident: 2023012513143574900_bts480-B6 article-title: Matplotlib: a 2D graphics environment publication-title: Comput. Sci. Eng. doi: 10.1109/MCSE.2007.55 – volume: 5 start-page: 40 year: 2004 ident: 2023012513143574900_bts480-B12 article-title: Pegasys: software for executing and integrating analyses of biological sequences publication-title: BMC Bioinformatics doi: 10.1186/1471-2105-5-40 – reference: 29788404 - Bioinformatics. 2018 Oct 15;34(20):3600 |
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