Genome characterization of an Argentinean isolate of alfalfa leaf curl virus
We investigated the molecular characteristics of an Argentinean isolate of alfalfa leaf curl virus (ALCV-Arg), a virus of the genus Capulavirus in the family Geminiviridae that was isolated from alfalfa plants showing dwarfism. The genome was found to be 2,750 nucleotides in length. In pairwise comp...
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| Veröffentlicht in: | Archives of virology Jg. 163; H. 3; S. 799 - 803 |
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01.03.2018
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| Abstract | We investigated the molecular characteristics of an Argentinean isolate of alfalfa leaf curl virus (ALCV-Arg), a virus of the genus
Capulavirus
in the family
Geminiviridae
that was isolated from alfalfa plants showing dwarfism. The genome was found to be 2,750 nucleotides in length. In pairwise comparisons, this ALCV isolate shared 83.2% to 92.6% sequence identity with European ALCV isolates. Sequence comparisons and phylogenetic analysis showed that this isolate combines features of strains A and B of ALCV. Recombination analysis showed that ALCV-Arg is a recombinant isolate that was generated by intraspecific recombination between ALCV strains A and B. The results of this study not only show that ALCV-Arg is unique because it combines features of strains A and B but also show that ALCV naturally infects this forage crop on the American continent. |
|---|---|
| AbstractList | We investigated the molecular characteristics of an Argentinean isolate of alfalfa leaf curl virus (ALCV-Arg), a virus of the genus Capulavirus in the family Geminiviridae that was isolated from alfalfa plants showing dwarfism. The genome was found to be 2,750 nucleotides in length. In pairwise comparisons, this ALCV isolate shared 83.2% to 92.6% sequence identity with European ALCV isolates. Sequence comparisons and phylogenetic analysis showed that this isolate combines features of strains A and B of ALCV. Recombination analysis showed that ALCV-Arg is a recombinant isolate that was generated by intraspecific recombination between ALCV strains A and B. The results of this study not only show that ALCV-Arg is unique because it combines features of strains A and B but also show that ALCV naturally infects this forage crop on the American continent. We investigated the molecular characteristics of an Argentinean isolate of alfalfa leaf curl virus (ALCV-Arg), a virus of the genus Capulavirus in the family Geminiviridae that was isolated from alfalfa plants showing dwarfism. The genome was found to be 2,750 nucleotides in length. In pairwise comparisons, this ALCV isolate shared 83.2% to 92.6% sequence identity with European ALCV isolates. Sequence comparisons and phylogenetic analysis showed that this isolate combines features of strains A and B of ALCV. Recombination analysis showed that ALCV-Arg is a recombinant isolate that was generated by intraspecific recombination between ALCV strains A and B. The results of this study not only show that ALCV-Arg is unique because it combines features of strains A and B but also show that ALCV naturally infects this forage crop on the American continent.We investigated the molecular characteristics of an Argentinean isolate of alfalfa leaf curl virus (ALCV-Arg), a virus of the genus Capulavirus in the family Geminiviridae that was isolated from alfalfa plants showing dwarfism. The genome was found to be 2,750 nucleotides in length. In pairwise comparisons, this ALCV isolate shared 83.2% to 92.6% sequence identity with European ALCV isolates. Sequence comparisons and phylogenetic analysis showed that this isolate combines features of strains A and B of ALCV. Recombination analysis showed that ALCV-Arg is a recombinant isolate that was generated by intraspecific recombination between ALCV strains A and B. The results of this study not only show that ALCV-Arg is unique because it combines features of strains A and B but also show that ALCV naturally infects this forage crop on the American continent. We investigated the molecular characteristics of an Argentinean isolate of alfalfa leaf curl virus (ALCV-Arg), a virus of the genus Capulavirus in the family Geminiviridae that was isolated from alfalfa plants showing dwarfism. The genome was found to be 2,750 nucleotides in length. In pairwise comparisons, this ALCV isolate shared 83.2% to 92.6% sequence identity with European ALCV isolates. Sequence comparisons and phylogenetic analysis showed that this isolate combines features of strains A and B of ALCV. Recombination analysis showed that ALCV-Arg is a recombinant isolate that was generated by intraspecific recombination between ALCV strains A and B. The results of this study not only show that ALCV-Arg is unique because it combines features of strains A and B but also show that ALCV naturally infects this forage crop on the American continent. |
| Author | Bejerman, Nicolás de Breuil, Soledad Lenardon, Sergio Giolitti, Fabián Trucco, Verónica Pardina, Patricia Rodriguez |
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| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/29209812$$D View this record in MEDLINE/PubMed |
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| CitedBy_id | crossref_primary_10_1016_j_virusres_2019_03_021 crossref_primary_10_1007_s11262_018_1563_2 crossref_primary_10_3389_fmicb_2020_553109 crossref_primary_10_3390_pathogens9030214 crossref_primary_10_1094_PDIS_04_18_0571_PDN crossref_primary_10_3390_v10100542 crossref_primary_10_1007_s42161_021_00961_8 crossref_primary_10_1094_PDIS_02_19_0318_PDN crossref_primary_10_1007_s11262_020_01783_z crossref_primary_10_1094_PDIS_03_18_0404_PDN |
| Cites_doi | 10.1094/PDIS-10-10-0764 10.1007/s00705-017-3268-6 10.1093/bioinformatics/bti263 10.1016/j.virol.2015.05.001 10.1016/j.virol.2016.03.016 10.1093/molbev/msw054 10.1016/j.virusres.2013.07.006 10.1093/bioinformatics/btu032 10.1007/s00705-017-3298-0 10.1371/journal.pone.0108277 10.1007/s11262-014-1045-0 10.1007/s10658-016-0899-5 10.1093/ve/vev003 10.1093/nar/gkh340 10.1128/JVI.00453-15 10.1007/s00705-016-2854-3 |
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| Copyright | Springer-Verlag GmbH Austria, part of Springer Nature 2017 Archives of Virology is a copyright of Springer, (2017). All Rights Reserved. |
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| Snippet | We investigated the molecular characteristics of an Argentinean isolate of alfalfa leaf curl virus (ALCV-Arg), a virus of the genus
Capulavirus
in the family... We investigated the molecular characteristics of an Argentinean isolate of alfalfa leaf curl virus (ALCV-Arg), a virus of the genus Capulavirus in the family... |
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| SubjectTerms | alfalfa Annotated Sequence Record Biomedical and Life Sciences Biomedicine dwarfing Dwarfism forage crops Geminiviridae genome Genomes Infectious Diseases leaf curling Leaves Medical Microbiology Nucleotides Phylogeny Recombination sequence analysis Strains (organisms) Virology viruses |
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| Title | Genome characterization of an Argentinean isolate of alfalfa leaf curl virus |
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