Phylogeography of the pelagic fish Seriola lalandi at different scales: confirmation of inter-ocean population structure and evaluation of southern African genetic diversity

The study investigated the global and regional phylogeography of the yellowtail kingfish Seriola lalandi by examining genetic diversity and population genetic structure of this species at inter-and intra-ocean level and on a regional scale. DNA fragments of two mitochondrial genes, cytochrome b (Cyt...

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Published in:African journal of marine science Vol. 38; no. 4; pp. 513 - 524
Main Authors: Swart, BL, Bester-van der Merwe, AE, Kerwath, SE, Roodt-Wilding, R
Format: Journal Article
Language:English
Published: Grahamstown Taylor & Francis 02.12.2016
Taylor & Francis Ltd
Subjects:
climatic oscillations
coasts
Cytochrome
cytochrome b
cytochrome-c oxidase
divergence estimates
DNA fragmentation
Fish
gene flow
Genes
Genetic diversity
genetic markers
Genetic structure
genetic variation
geographic scale
Marine
microsatellite repeats
mitochondria
pelagic fish
Phylogeography
Pleistocene
Population
Population differentiation
Population structure
Seriola lalandi
South Africa
Studies
subspecies
yellowtail
South Africa
ISSN:1814-232X, 1814-2338, 1814-2338
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Abstract The study investigated the global and regional phylogeography of the yellowtail kingfish Seriola lalandi by examining genetic diversity and population genetic structure of this species at inter-and intra-ocean level and on a regional scale. DNA fragments of two mitochondrial genes, cytochrome b (Cytb) and cytochrome c oxidase subunit I (COI) and one nuclear gene, recombination activating gene 1 (RAG1), were sequenced to investigate the global-scale phylogeography of this species. The population genetic structure within the South Pacific, as well as along the South African coastline, was examined further using six microsatellite markers. Three distinct clades were identified for S. lalandi, which correspond with previously described subspecies of the North-East Pacific, North-West Pacific and the Southern Hemisphere. Within the latter, additional divergence was observed between the South Pacific and the South-East Atlantic regions. Divergence estimates were indicative of a Pacific origin for S. lalandi populations, because of Pleistocene vicariant events. Microsatellite analyses revealed overall significant genetic differentiation between South African and South Pacific samples. This corroborates recent findings on the global phylogeography of the species. No population differentiation was observed within South Africa, indicating high levels of gene flow.
AbstractList The study investigated the global and regional phylogeography of the yellowtail kingfish Seriola lalandi by examining genetic diversity and population genetic structure of this species at inter-and intra-ocean level and on a regional scale. DNA fragments of two mitochondrial genes, cytochrome b (Cytb) and cytochrome c oxidase subunit I (COI) and one nuclear gene, recombination activating gene 1 (RAG1), were sequenced to investigate the global-scale phylogeography of this species. The population genetic structure within the South Pacific, as well as along the South African coastline, was examined further using six microsatellite markers. Three distinct clades were identified for S. lalandi, which correspond with previously described subspecies of the North-East Pacific, North-West Pacific and the Southern Hemisphere. Within the latter, additional divergence was observed between the South Pacific and the South-East Atlantic regions. Divergence estimates were indicative of a Pacific origin for S. lalandi populations, because of Pleistocene vicariant events. Microsatellite analyses revealed overall significant genetic differentiation between South African and South Pacific samples. This corroborates recent findings on the global phylogeography of the species. No population differentiation was observed within South Africa, indicating high levels of gene flow.
Author Swart, BL
Bester-van der Merwe, AE
Kerwath, SE
Roodt-Wilding, R
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  surname: Roodt-Wilding
  fullname: Roodt-Wilding, R
  email: roodt@sun.ac.za
  organization: Molecular Breeding and Biodiversity Group, Department of Genetics, Stellenbosch University
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Snippet The study investigated the global and regional phylogeography of the yellowtail kingfish Seriola lalandi by examining genetic diversity and population genetic...
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SubjectTerms climatic oscillations
coasts
Cytochrome
cytochrome b
cytochrome-c oxidase
divergence estimates
DNA fragmentation
Fish
gene flow
Genes
Genetic diversity
genetic markers
Genetic structure
genetic variation
geographic scale
Marine
microsatellite repeats
mitochondria
pelagic fish
Phylogeography
Pleistocene
Population
Population differentiation
Population structure
Seriola lalandi
South Africa
Studies
subspecies
yellowtail
Title Phylogeography of the pelagic fish Seriola lalandi at different scales: confirmation of inter-ocean population structure and evaluation of southern African genetic diversity
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Volume 38
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