In situ abundance and carbon fixation activity of distinct anoxygenic phototrophs in the stratified seawater lake Rogoznica

Summary Sulphide‐driven anoxygenic photosynthesis is an ancient microbial metabolism that contributes significantly to inorganic carbon fixation in stratified, sulphidic water bodies. Methods commonly applied to quantify inorganic carbon fixation by anoxygenic phototrophs, however, cannot resolve th...

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Vydáno v:	Environmental microbiology Ročník 21; číslo 10; s. 3896 - 3908
Hlavní autoři:	Pjevac, Petra, Dyksma, Stefan, Goldhammer, Tobias, Mujakić, Izabela, Koblížek, Michal, Mußmann, Marc, Amann, Rudolf, Orlić, Sandi
Médium:	Journal Article
Jazyk:	angličtina
Vydáno:	Hoboken, USA John Wiley & Sons, Inc 01.10.2019 Wiley Subscription Services, Inc
Témata:	Abundance autotrophs Bacteria Carbon Carbon Cycle carbon dioxide fixation Carbon fixation Chemical analysis Chemocline Chlorobium - isolation & purification Chlorobium - metabolism Chlorobium phaeobacteroides Chromatiaceae - isolation & purification Chromatiaceae - metabolism Croatia Flow cytometry Forests genome Genomes Green sulfur bacteria Halochromatium Heterotrophic growth Inorganic carbon Labeling Lakes Lakes - microbiology Metabolism metagenomics Microorganisms Photopigments Photosynthesis Populations Radioisotopes radiolabeling Seawater Seawater - microbiology Sulfides Sulfides - metabolism Sulfur Sulfur - metabolism Sulphides Sulphur surface water Water analysis Workflow Croatia
ISSN:	1462-2912, 1462-2920, 1462-2920
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Abstract	Summary Sulphide‐driven anoxygenic photosynthesis is an ancient microbial metabolism that contributes significantly to inorganic carbon fixation in stratified, sulphidic water bodies. Methods commonly applied to quantify inorganic carbon fixation by anoxygenic phototrophs, however, cannot resolve the contributions of distinct microbial populations to the overall process. We implemented a straightforward workflow, consisting of radioisotope labelling and flow cytometric cell sorting based on the distinct autofluorescence of bacterial photopigments, to discriminate and quantify contributions of co‐occurring anoxygenic phototrophic populations to in situ inorganic carbon fixation in environmental samples. This allowed us to assign 89.3% ± 7.6% of daytime inorganic carbon fixation by anoxygenic phototrophs in Lake Rogoznica (Croatia) to an abundant chemocline‐dwelling population of green sulphur bacteria (dominated by Chlorobium phaeobacteroides), whereas the co‐occurring purple sulphur bacteria (Halochromatium sp.) contributed only 1.8% ± 1.4%. Furthermore, we obtained two metagenome assembled genomes of green sulphur bacteria and one of a purple sulphur bacterium which provides the first genomic insights into the genus Halochromatium, confirming its high metabolic flexibility and physiological potential for mixo‐ and heterotrophic growth.
AbstractList	Sulphide‐driven anoxygenic photosynthesis is an ancient microbial metabolism that contributes significantly to inorganic carbon fixation in stratified, sulphidic water bodies. Methods commonly applied to quantify inorganic carbon fixation by anoxygenic phototrophs, however, cannot resolve the contributions of distinct microbial populations to the overall process. We implemented a straightforward workflow, consisting of radioisotope labelling and flow cytometric cell sorting based on the distinct autofluorescence of bacterial photopigments, to discriminate and quantify contributions of co‐occurring anoxygenic phototrophic populations to in situ inorganic carbon fixation in environmental samples. This allowed us to assign 89.3% ± 7.6% of daytime inorganic carbon fixation by anoxygenic phototrophs in Lake Rogoznica (Croatia) to an abundant chemocline‐dwelling population of green sulphur bacteria (dominated by Chlorobium phaeobacteroides), whereas the co‐occurring purple sulphur bacteria (Halochromatium sp.) contributed only 1.8% ± 1.4%. Furthermore, we obtained two metagenome assembled genomes of green sulphur bacteria and one of a purple sulphur bacterium which provides the first genomic insights into the genus Halochromatium, confirming its high metabolic flexibility and physiological potential for mixo‐ and heterotrophic growth. Sulphide-driven anoxygenic photosynthesis is an ancient microbial metabolism that contributes significantly to inorganic carbon fixation in stratified, sulphidic water bodies. Methods commonly applied to quantify inorganic carbon fixation by anoxygenic phototrophs, however, cannot resolve the contributions of distinct microbial populations to the overall process. We implemented a straightforward workflow, consisting of radioisotope labelling and flow cytometric cell sorting based on the distinct autofluorescence of bacterial photopigments, to discriminate and quantify contributions of co-occurring anoxygenic phototrophic populations to in situ inorganic carbon fixation in environmental samples. This allowed us to assign 89.3% ± 7.6% of daytime inorganic carbon fixation by anoxygenic phototrophs in Lake Rogoznica (Croatia) to an abundant chemocline-dwelling population of green sulphur bacteria (dominated by Chlorobium phaeobacteroides), whereas the co-occurring purple sulphur bacteria (Halochromatium sp.) contributed only 1.8% ± 1.4%. Furthermore, we obtained two metagenome assembled genomes of green sulphur bacteria and one of a purple sulphur bacterium which provides the first genomic insights into the genus Halochromatium, confirming its high metabolic flexibility and physiological potential for mixo- and heterotrophic growth.Sulphide-driven anoxygenic photosynthesis is an ancient microbial metabolism that contributes significantly to inorganic carbon fixation in stratified, sulphidic water bodies. Methods commonly applied to quantify inorganic carbon fixation by anoxygenic phototrophs, however, cannot resolve the contributions of distinct microbial populations to the overall process. We implemented a straightforward workflow, consisting of radioisotope labelling and flow cytometric cell sorting based on the distinct autofluorescence of bacterial photopigments, to discriminate and quantify contributions of co-occurring anoxygenic phototrophic populations to in situ inorganic carbon fixation in environmental samples. This allowed us to assign 89.3% ± 7.6% of daytime inorganic carbon fixation by anoxygenic phototrophs in Lake Rogoznica (Croatia) to an abundant chemocline-dwelling population of green sulphur bacteria (dominated by Chlorobium phaeobacteroides), whereas the co-occurring purple sulphur bacteria (Halochromatium sp.) contributed only 1.8% ± 1.4%. Furthermore, we obtained two metagenome assembled genomes of green sulphur bacteria and one of a purple sulphur bacterium which provides the first genomic insights into the genus Halochromatium, confirming its high metabolic flexibility and physiological potential for mixo- and heterotrophic growth. Summary Sulphide‐driven anoxygenic photosynthesis is an ancient microbial metabolism that contributes significantly to inorganic carbon fixation in stratified, sulphidic water bodies. Methods commonly applied to quantify inorganic carbon fixation by anoxygenic phototrophs, however, cannot resolve the contributions of distinct microbial populations to the overall process. We implemented a straightforward workflow, consisting of radioisotope labelling and flow cytometric cell sorting based on the distinct autofluorescence of bacterial photopigments, to discriminate and quantify contributions of co‐occurring anoxygenic phototrophic populations to in situ inorganic carbon fixation in environmental samples. This allowed us to assign 89.3% ± 7.6% of daytime inorganic carbon fixation by anoxygenic phototrophs in Lake Rogoznica (Croatia) to an abundant chemocline‐dwelling population of green sulphur bacteria (dominated by Chlorobium phaeobacteroides), whereas the co‐occurring purple sulphur bacteria (Halochromatium sp.) contributed only 1.8% ± 1.4%. Furthermore, we obtained two metagenome assembled genomes of green sulphur bacteria and one of a purple sulphur bacterium which provides the first genomic insights into the genus Halochromatium, confirming its high metabolic flexibility and physiological potential for mixo‐ and heterotrophic growth.
Author	Goldhammer, Tobias Dyksma, Stefan Orlić, Sandi Koblížek, Michal Pjevac, Petra Mußmann, Marc Mujakić, Izabela Amann, Rudolf
Author_xml	– sequence: 1 givenname: Petra orcidid: 0000-0001-7344-302X surname: Pjevac fullname: Pjevac, Petra email: pjevac@microbial-ecology.net organization: Center for Microbiology and Environmental Systems Science, Division of Microbial Ecology – sequence: 2 givenname: Stefan orcidid: 0000-0002-1049-701X surname: Dyksma fullname: Dyksma, Stefan organization: Max Planck Institute for Marine Microbiology – sequence: 3 givenname: Tobias surname: Goldhammer fullname: Goldhammer, Tobias organization: Leibniz Institute for Freshwater Ecology and Inland Fisheries – sequence: 4 givenname: Izabela surname: Mujakić fullname: Mujakić, Izabela organization: Center Algatech – sequence: 5 givenname: Michal surname: Koblížek fullname: Koblížek, Michal organization: Center Algatech – sequence: 6 givenname: Marc surname: Mußmann fullname: Mußmann, Marc organization: Center for Microbiology and Environmental Systems Science, Division of Microbial Ecology – sequence: 7 givenname: Rudolf surname: Amann fullname: Amann, Rudolf organization: Max Planck Institute for Marine Microbiology – sequence: 8 givenname: Sandi orcidid: 0000-0002-6339-4145 surname: Orlić fullname: Orlić, Sandi email: sandi.orlic@irb.hr organization: Microbial Ecology
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CitedBy_id	crossref_primary_10_1016_j_marpolbul_2023_114931 crossref_primary_10_1099_mgen_0_000712 crossref_primary_10_1016_j_syapm_2019_126016 crossref_primary_10_1111_1462_2920_15265 crossref_primary_10_1002_mbo3_1228 crossref_primary_10_3390_microorganisms13081945 crossref_primary_10_1016_j_gca_2023_08_020 crossref_primary_10_1093_femsec_fiab010 crossref_primary_10_1016_j_ecss_2023_108420
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Snippet	Summary Sulphide‐driven anoxygenic photosynthesis is an ancient microbial metabolism that contributes significantly to inorganic carbon fixation in stratified,... Sulphide‐driven anoxygenic photosynthesis is an ancient microbial metabolism that contributes significantly to inorganic carbon fixation in stratified,... Sulphide-driven anoxygenic photosynthesis is an ancient microbial metabolism that contributes significantly to inorganic carbon fixation in stratified,...
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SubjectTerms	Abundance autotrophs Bacteria Carbon Carbon Cycle carbon dioxide fixation Carbon fixation Chemical analysis Chemocline Chlorobium - isolation & purification Chlorobium - metabolism Chlorobium phaeobacteroides Chromatiaceae - isolation & purification Chromatiaceae - metabolism Croatia Flow cytometry Forests genome Genomes Green sulfur bacteria Halochromatium Heterotrophic growth Inorganic carbon Labeling Lakes Lakes - microbiology Metabolism metagenomics Microorganisms Photopigments Photosynthesis Populations Radioisotopes radiolabeling Seawater Seawater - microbiology Sulfides Sulfides - metabolism Sulfur Sulfur - metabolism Sulphides Sulphur surface water Water analysis Workflow
Title	In situ abundance and carbon fixation activity of distinct anoxygenic phototrophs in the stratified seawater lake Rogoznica
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