Genomic sequence and phylogenetic analyses of two novel orthoreovirus strains isolated from Pekin ducks in 2014 in Germany

•The genome sequence and phylogenetic analysis of two novel orthoreovirus strains are described.•Strain 2533/4/1-10 is probably a triple reassortant.•Strain 2533/6/1-10 might have been acquired from an unknown natural host species. Complete genomic sequences of two orthoreovirus strains, D2533/4/1-1...

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Published in:	Virus research Vol. 257; pp. 57 - 62
Main Authors:	Farkas, Szilvia L., Varga-Kugler, Renáta, Marton, Szilvia, Lengyel, György, Palya, Vilmos, Bányai, Krisztián
Format:	Journal Article
Language:	English
Published:	Netherlands Elsevier B.V 15.09.2018
Subjects:	animal health Animals Bird Diseases - virology ducklings Ducks - virology Genome, Viral genomics Germany Host species transmission event hosts nucleotide sequences Orthoreovirus Orthoreovirus, Avian - classification Orthoreovirus, Avian - genetics Orthoreovirus, Avian - isolation & purification Pekin Phylogenetic analysis Phylogeny Reassortant Viruses Reassortment Reoviridae Infections - veterinary Reoviridae Infections - virology sequence analysis Sequence Analysis, DNA waterfowl Waterfowl orthoreoviruses Germany Phylogenetic analysis Waterfowl orthoreoviruses Reassortment Host species transmission event
ISSN:	0168-1702, 1872-7492, 1872-7492
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Abstract	•The genome sequence and phylogenetic analysis of two novel orthoreovirus strains are described.•Strain 2533/4/1-10 is probably a triple reassortant.•Strain 2533/6/1-10 might have been acquired from an unknown natural host species. Complete genomic sequences of two orthoreovirus strains, D2533/4/1-10 and D2533/6/1-10, isolated from Pekin ducklings in Germany have been determined. Pairwise sequence comparisons and phylogenetic analyses indicated that strain D2533/4/1-10 might have acquired its genomic segments from three different origins, from classical and novel waterfowl reoviruses, and a yet unknown orthoreovirus strain. D2533/6/1-10 proved to be only distantly related to previously described orthoreoviruses. Reassortment, host species transmission events, and successful adaptation of novel variants may signify a challenge for animal health and maintenance of economic production.
AbstractList	Complete genomic sequences of two orthoreovirus strains, D2533/4/1-10 and D2533/6/1-10, isolated from Pekin ducklings in Germany have been determined. Pairwise sequence comparisons and phylogenetic analyses indicated that strain D2533/4/1-10 might have acquired its genomic segments from three different origins, from classical and novel waterfowl reoviruses, and a yet unknown orthoreovirus strain. D2533/6/1-10 proved to be only distantly related to previously described orthoreoviruses. Reassortment, host species transmission events, and successful adaptation of novel variants may signify a challenge for animal health and maintenance of economic production. •The genome sequence and phylogenetic analysis of two novel orthoreovirus strains are described.•Strain 2533/4/1-10 is probably a triple reassortant.•Strain 2533/6/1-10 might have been acquired from an unknown natural host species. Complete genomic sequences of two orthoreovirus strains, D2533/4/1-10 and D2533/6/1-10, isolated from Pekin ducklings in Germany have been determined. Pairwise sequence comparisons and phylogenetic analyses indicated that strain D2533/4/1-10 might have acquired its genomic segments from three different origins, from classical and novel waterfowl reoviruses, and a yet unknown orthoreovirus strain. D2533/6/1-10 proved to be only distantly related to previously described orthoreoviruses. Reassortment, host species transmission events, and successful adaptation of novel variants may signify a challenge for animal health and maintenance of economic production. Complete genomic sequences of two orthoreovirus strains, D2533/4/1-10 and D2533/6/1-10, isolated from Pekin ducklings in Germany have been determined. Pairwise sequence comparisons and phylogenetic analyses indicated that strain D2533/4/1-10 might have acquired its genomic segments from three different origins, from classical and novel waterfowl reoviruses, and a yet unknown orthoreovirus strain. D2533/6/1-10 proved to be only distantly related to previously described orthoreoviruses. Reassortment, host species transmission events, and successful adaptation of novel variants may signify a challenge for animal health and maintenance of economic production.Complete genomic sequences of two orthoreovirus strains, D2533/4/1-10 and D2533/6/1-10, isolated from Pekin ducklings in Germany have been determined. Pairwise sequence comparisons and phylogenetic analyses indicated that strain D2533/4/1-10 might have acquired its genomic segments from three different origins, from classical and novel waterfowl reoviruses, and a yet unknown orthoreovirus strain. D2533/6/1-10 proved to be only distantly related to previously described orthoreoviruses. Reassortment, host species transmission events, and successful adaptation of novel variants may signify a challenge for animal health and maintenance of economic production.
Author	Farkas, Szilvia L. Palya, Vilmos Bányai, Krisztián Varga-Kugler, Renáta Lengyel, György Marton, Szilvia
Author_xml	– sequence: 1 givenname: Szilvia L. surname: Farkas fullname: Farkas, Szilvia L. email: fszilvi@yahoo.com organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest 1143, Hungary – sequence: 2 givenname: Renáta surname: Varga-Kugler fullname: Varga-Kugler, Renáta organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest 1143, Hungary – sequence: 3 givenname: Szilvia surname: Marton fullname: Marton, Szilvia organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest 1143, Hungary – sequence: 4 givenname: György surname: Lengyel fullname: Lengyel, György organization: Military Medical Centre of Hungarian Defense Forces, Róbert Károly krt. 44, Budapest, 1134, Hungary – sequence: 5 givenname: Vilmos surname: Palya fullname: Palya, Vilmos organization: Ceva-Phylaxia Veterinary Biologicals Co. LTD, Szállás u. 5, Budapest 1107, Hungary – sequence: 6 givenname: Krisztián surname: Bányai fullname: Bányai, Krisztián organization: Institute for Veterinary Medical Research, Centre for Agricultural Research, Hungarian Academy of Sciences, Hungária krt. 21, Budapest 1143, Hungary
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Keywords	Phylogenetic analysis Waterfowl orthoreoviruses Reassortment Host species transmission event
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Snippet	•The genome sequence and phylogenetic analysis of two novel orthoreovirus strains are described.•Strain 2533/4/1-10 is probably a triple reassortant.•Strain... Complete genomic sequences of two orthoreovirus strains, D2533/4/1-10 and D2533/6/1-10, isolated from Pekin ducklings in Germany have been determined. Pairwise...
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SubjectTerms	animal health Animals Bird Diseases - virology ducklings Ducks - virology Genome, Viral genomics Germany Host species transmission event hosts nucleotide sequences Orthoreovirus Orthoreovirus, Avian - classification Orthoreovirus, Avian - genetics Orthoreovirus, Avian - isolation & purification Pekin Phylogenetic analysis Phylogeny Reassortant Viruses Reassortment Reoviridae Infections - veterinary Reoviridae Infections - virology sequence analysis Sequence Analysis, DNA waterfowl Waterfowl orthoreoviruses
Title	Genomic sequence and phylogenetic analyses of two novel orthoreovirus strains isolated from Pekin ducks in 2014 in Germany
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