High-Performance Computation of the Number of Nested RNA Structures with 3D Parallel Tiled Code

Many current bioinformatics algorithms have been implemented in parallel programming code. Some of them have already reached the limits imposed by Amdahl’s law, but many can still be improved. In our paper, we present an approach allowing us to generate a high-performance code for calculating the nu...

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Veröffentlicht in:	Eng (Basel, Switzerland) Jg. 4; H. 1; S. 507 - 525
Hauptverfasser:	Błaszyński, Piotr, Bielecki, Włodzimierz
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	Basel MDPI AG 01.03.2023
Schlagworte:	Algorithms Bioinformatics code parallelization Codes Dependence dynamic programming Gold High performance computing high-performance code Parallel programming RNA folding tiled code generation
ISSN:	2673-4117, 2673-4117
Online-Zugang:	Volltext
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