GenoTools: an open-source Python package for efficient genotype data quality control and analysis

GenoTools, a Python package, streamlines population genetics research by integrating ancestry estimation, quality control, and genome-wide association studies capabilities into efficient pipelines. By tracking samples, variants, and quality-specific measures throughout fully customizable pipelines,...

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Bibliographic Details

Published in:	G3 : genes - genomes - genetics Vol. 15; no. 1
Main Authors:	Vitale, Dan, Koretsky, Mathew J, Kuznetsov, Nicole, Hong, Samantha, Martin, Jessica, James, Mikayla, Makarious, Mary B, Leonard, Hampton, Iwaki, Hirotaka, Faghri, Faraz, Blauwendraat, Cornelis, Singleton, Andrew B, Song, Yeajin, Levine, Kristin, Kumar-Sreelatha, Ashwin Ashok, Fang, Zih-Hua, Nalls, Mike
Format:	Journal Article
Language:	English
Published:	England Oxford University Press 08.01.2025
Subjects:	Alzheimer Disease - genetics Computational Biology - methods Genetics, Population Genome-Wide Association Study - methods Genotype Humans Parkinson Disease - genetics Quality Control Software Software and Data Resources python ancestry Uniform Manifold Approximation and Projection (UMAP) principal component analysis (PCA) genotype
ISSN:	2160-1836, 2160-1836
Online Access:	Get full text
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