LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on variant call format files

Abstract The triangular correlation heatmap aiming to visualize the linkage disequilibrium (LD) pattern and haplotype block structure of SNPs is ubiquitous component of population-based genetic studies. However, current tools suffered from the problem of time and memory consuming. Here, we developed...

Full description

Bibliographic Details

Published in:	Briefings in bioinformatics Vol. 22; no. 4
Main Authors:	Dong, Shan-Shan, He, Wei-Ming, Ji, Jing-Jing, Zhang, Chi, Guo, Yan, Yang, Tie-Lin
Format:	Journal Article
Language:	English
Published:	Oxford Oxford University Press 01.07.2021 Oxford Publishing Limited (England)
Subjects:	Annotations Format Haplotypes Linkage disequilibrium Population genetics Population studies Single-nucleotide polymorphism Subgroups visualization VCF files haplotype block linkage disequilibrium
ISSN:	1467-5463, 1477-4054, 1477-4054
Online Access:	Get full text
Tags:	Add Tag No Tags, Be the first to tag this record!