Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure

Chromatin remodellers are helicase-like, ATP-dependent enzymes that alter chromatin structure and nucleosome positions to allow regulatory proteins access to DNA. Here we report the cryo-electron microscopy structure of chromatin remodeller Switch/sucrose non-fermentable (SWI2/SNF2) from Saccharomyc...

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Vydané v:Nature (London) Ročník 544; číslo 7651; s. 440 - 445
Hlavní autori: Liu, Xiaoyu, Li, Meijing, Xia, Xian, Li, Xueming, Chen, Zhucheng
Médium: Journal Article
Jazyk:English
Vydavateľské údaje: London Nature Publishing Group UK 27.04.2017
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ISSN:0028-0836, 1476-4687, 1476-4687
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Abstract Chromatin remodellers are helicase-like, ATP-dependent enzymes that alter chromatin structure and nucleosome positions to allow regulatory proteins access to DNA. Here we report the cryo-electron microscopy structure of chromatin remodeller Switch/sucrose non-fermentable (SWI2/SNF2) from Saccharomyces cerevisiae bound to the nucleosome. The structure shows that the two core domains of Snf2 are realigned upon nucleosome binding, suggesting activation of the enzyme. The core domains contact each other through two induced Brace helices, which are crucial for coupling ATP hydrolysis to chromatin remodelling. Snf2 binds to the phosphate backbones of one DNA gyre of the nucleosome mainly through its helicase motifs within the major domain cleft, suggesting a conserved mechanism of substrate engagement across different remodellers. Snf2 contacts the second DNA gyre via a positively charged surface, providing a mechanism to anchor the remodeller at a fixed position of the nucleosome. Snf2 locally deforms nucleosomal DNA at the site of binding, priming the substrate for the remodelling reaction. Together, these findings provide mechanistic insights into chromatin remodelling. The cryo-electron microscopy structure of Saccharomyces cerevisiae Snf2 chromatin remodeller bound to a nucleosome and a proposed mechanism for DNA translocation by Snf2 are presented. Structure of a chromatin remodeller Chromatin remodellers are helicase-like, ATP-dependent enzymes that alter chromatin structure and nucleosome positions in order to allow regulatory proteins access to DNA. Here, Zhucheng Chen and colleagues report the cryo-electron microscopy structure of the budding yeast Snf2 chromatin remodeller bound to a nucleosome and propose a mechanism for DNA translocation by Snf2. The remodeller interacts with the nucleosome mainly using helicase motifs and binds the phosphate backbones along the DNA minor groove. Most of the DNA-binding elements within Snf2 are conserved across other families of remodelling enzymes, indicating that this mode of nucleosome engagement is likely to be widespread.
AbstractList Chromatin remodellers are helicase-like, ATP-dependent enzymes that alter chromatin structure and nucleosome positions to allow regulatory proteins access to DNA. Here we report the cryo-electron microscopy structure of chromatin remodeller Switch/sucrose non-fermentable (SWI2/SNF2) from Saccharomyces cerevisiae bound to the nucleosome. The structure shows that the two core domains of Snf2 are realigned upon nucleosome binding, suggesting activation of the enzyme. The core domains contact each other through two induced Brace helices, which are crucial for coupling ATP hydrolysis to chromatin remodelling. Snf2 binds to the phosphate backbones of one DNA gyre of the nucleosome mainly through its helicase motifs within the major domain cleft, suggesting a conserved mechanism of substrate engagement across different remodellers. Snf2 contacts the second DNA gyre via a positively charged surface, providing a mechanism to anchor the remodeller at a fixed position of the nucleosome. Snf2 locally deforms nucleosomal DNA at the site of binding, priming the substrate for the remodelling reaction. Together, these findings provide mechanistic insights into chromatin remodelling.
Chromatin remodellers are helicase-like, ATP-dependent enzymes that alter chromatin structure and nucleosome positions to allow regulatory proteins access to DNA. Here we report the cryo-electron microscopy structure of chromatin remodeller Switch/sucrose non-fermentable (SWI2/SNF2) from Saccharomyces cerevisiae bound to the nucleosome. The structure shows that the two core domains of Snf2 are realigned upon nucleosome binding, suggesting activation of the enzyme. The core domains contact each other through two induced Brace helices, which are crucial for coupling ATP hydrolysis to chromatin remodelling. Snf2 binds to the phosphate backbones of one DNA gyre of the nucleosome mainly through its helicase motifs within the major domain cleft, suggesting a conserved mechanism of substrate engagement across different remodellers. Snf2 contacts the second DNA gyre via a positively charged surface, providing a mechanism to anchor the remodeller at a fixed position of the nucleosome. Snf2 locally deforms nucleosomal DNA at the site of binding, priming the substrate for the remodelling reaction. Together, these findings provide mechanistic insights into chromatin remodelling.Chromatin remodellers are helicase-like, ATP-dependent enzymes that alter chromatin structure and nucleosome positions to allow regulatory proteins access to DNA. Here we report the cryo-electron microscopy structure of chromatin remodeller Switch/sucrose non-fermentable (SWI2/SNF2) from Saccharomyces cerevisiae bound to the nucleosome. The structure shows that the two core domains of Snf2 are realigned upon nucleosome binding, suggesting activation of the enzyme. The core domains contact each other through two induced Brace helices, which are crucial for coupling ATP hydrolysis to chromatin remodelling. Snf2 binds to the phosphate backbones of one DNA gyre of the nucleosome mainly through its helicase motifs within the major domain cleft, suggesting a conserved mechanism of substrate engagement across different remodellers. Snf2 contacts the second DNA gyre via a positively charged surface, providing a mechanism to anchor the remodeller at a fixed position of the nucleosome. Snf2 locally deforms nucleosomal DNA at the site of binding, priming the substrate for the remodelling reaction. Together, these findings provide mechanistic insights into chromatin remodelling.
Chromatin remodellers are helicase-like, ATP-dependent enzymes that alter chromatin structure and nucleosome positions to allow regulatory proteins access to DNA. Here we report the cryo-electron microscopy structure of chromatin remodeller Switch/sucrose non-fermentable (SWI2/SNF2) from Saccharomyces cerevisiae bound to the nucleosome. The structure shows that the two core domains of Snf2 are realigned upon nucleosome binding, suggesting activation of the enzyme. The core domains contact each other through two induced Brace helices, which are crucial for coupling ATP hydrolysis to chromatin remodelling. Snf2 binds to the phosphate backbones of one DNA gyre of the nucleosome mainly through its helicase motifs within the major domain cleft, suggesting a conserved mechanism of substrate engagement across different remodellers. Snf2 contacts the second DNA gyre via a positively charged surface, providing a mechanism to anchor the remodeller at a fixed position of the nucleosome. Snf2 locally deforms nucleosomal DNA at the site of binding, priming the substrate for the remodelling reaction. Together, these findings provide mechanistic insights into chromatin remodelling. The cryo-electron microscopy structure of Saccharomyces cerevisiae Snf2 chromatin remodeller bound to a nucleosome and a proposed mechanism for DNA translocation by Snf2 are presented. Structure of a chromatin remodeller Chromatin remodellers are helicase-like, ATP-dependent enzymes that alter chromatin structure and nucleosome positions in order to allow regulatory proteins access to DNA. Here, Zhucheng Chen and colleagues report the cryo-electron microscopy structure of the budding yeast Snf2 chromatin remodeller bound to a nucleosome and propose a mechanism for DNA translocation by Snf2. The remodeller interacts with the nucleosome mainly using helicase motifs and binds the phosphate backbones along the DNA minor groove. Most of the DNA-binding elements within Snf2 are conserved across other families of remodelling enzymes, indicating that this mode of nucleosome engagement is likely to be widespread.
Author Liu, Xiaoyu
Xia, Xian
Li, Xueming
Li, Meijing
Chen, Zhucheng
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  surname: Liu
  fullname: Liu, Xiaoyu
  organization: Ministry of Education Key Laboratory of Protein Science, Tsinghua University, School of Life Sciences, Tsinghua University, Tsinghua-Peking Joint Center for Life Sciences
– sequence: 2
  givenname: Meijing
  surname: Li
  fullname: Li, Meijing
  organization: Ministry of Education Key Laboratory of Protein Science, Tsinghua University, School of Life Sciences, Tsinghua University, Tsinghua-Peking Joint Center for Life Sciences
– sequence: 3
  givenname: Xian
  surname: Xia
  fullname: Xia, Xian
  organization: Ministry of Education Key Laboratory of Protein Science, Tsinghua University, School of Life Sciences, Tsinghua University
– sequence: 4
  givenname: Xueming
  surname: Li
  fullname: Li, Xueming
  email: lixueming@mail.tsinghua.edu.cn
  organization: Ministry of Education Key Laboratory of Protein Science, Tsinghua University, School of Life Sciences, Tsinghua University, Tsinghua-Peking Joint Center for Life Sciences
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  givenname: Zhucheng
  surname: Chen
  fullname: Chen, Zhucheng
  email: Zhucheng_chen@tsinghua.edu.cn
  organization: Ministry of Education Key Laboratory of Protein Science, Tsinghua University, School of Life Sciences, Tsinghua University
BackLink https://www.ncbi.nlm.nih.gov/pubmed/28424519$$D View this record in MEDLINE/PubMed
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Copyright Macmillan Publishers Limited, part of Springer Nature. All rights reserved. 2017
Copyright Nature Publishing Group Apr 27, 2017
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Snippet Chromatin remodellers are helicase-like, ATP-dependent enzymes that alter chromatin structure and nucleosome positions to allow regulatory proteins access to...
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springer
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StartPage 440
SubjectTerms 101/28
631/337/100/102
631/535/1258/1259
Adenosine Triphosphatases - chemistry
Adenosine Triphosphatases - metabolism
Adenosine Triphosphatases - ultrastructure
Amino Acid Sequence
ATP
Binding Sites
Chromatin
Chromatin Assembly and Disassembly
Cryoelectron Microscopy
Deoxyribonucleic acid
DNA
DNA - chemistry
DNA - metabolism
Enzymes
Flexibility
Histones - chemistry
Histones - metabolism
Humanities and Social Sciences
Models, Molecular
multidisciplinary
Nucleosomes - chemistry
Nucleosomes - metabolism
Nucleosomes - ultrastructure
Protein Binding
Saccharomyces cerevisiae - chemistry
Saccharomyces cerevisiae - enzymology
Saccharomyces cerevisiae - ultrastructure
Saccharomyces cerevisiae Proteins - chemistry
Saccharomyces cerevisiae Proteins - metabolism
Saccharomyces cerevisiae Proteins - ultrastructure
Science
Transcription Factors - chemistry
Transcription Factors - metabolism
Transcription Factors - ultrastructure
Title Mechanism of chromatin remodelling revealed by the Snf2-nucleosome structure
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