Stacks 2: Analytical methods for paired‐end sequencing improve RADseq‐based population genomics

For half a century population genetics studies have put type II restriction endonucleases to work. Now, coupled with massively‐parallel, short‐read sequencing, the family of RAD protocols that wields these enzymes has generated vast genetic knowledge from the natural world. Here, we describe the fir...

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Bibliographic Details
Published in:	Molecular ecology Vol. 28; no. 21; pp. 4737 - 4754
Main Authors:	Rochette, Nicolas C., Rivera‐Colón, Angel G., Catchen, Julian M.
Format:	Journal Article
Language:	English
Published:	England Blackwell Publishing Ltd 01.11.2019
Subjects:	Algorithms analytical methods Bayesian analysis Bayesian theory bioinformatics Computer programs Computer simulation computer software conservation genetics data collection Datasets Empirical analysis Genetics genotype calling Genotypes Genotyping Graph theory haplotype phasing Haplotypes Loci metagenomics Metapopulations Population genetics Population studies restriction endonucleases restriction‐site associated DNA sequencing Single-nucleotide polymorphism Software Stacks population genetics genotype calling restriction-site associated DNA sequencing bioinformatics conservation genetics haplotype phasing
ISSN:	0962-1083, 1365-294X, 1365-294X
Online Access:	Get full text
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