The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text
Interpretation of semantic propositions in free-text documents such as MEDLINE citations would provide valuable support for biomedical applications, and several approaches to semantic interpretation are being pursued in the biomedical informatics community. In this paper, we describe a methodology f...
Gespeichert in:
| Veröffentlicht in: | Journal of biomedical informatics Jg. 36; H. 6; S. 462 - 477 |
|---|---|
| Hauptverfasser: | , |
| Format: | Journal Article |
| Sprache: | Englisch |
| Veröffentlicht: |
United States
Elsevier Inc
01.12.2003
|
| Schlagworte: | |
| ISSN: | 1532-0464, 1532-0480 |
| Online-Zugang: | Volltext |
| Tags: |
Tag hinzufügen
Keine Tags, Fügen Sie den ersten Tag hinzu!
|
| Abstract | Interpretation of semantic propositions in free-text documents such as MEDLINE citations would provide valuable support for biomedical applications, and several approaches to semantic interpretation are being pursued in the biomedical informatics community. In this paper, we describe a methodology for interpreting linguistic structures that encode hypernymic propositions, in which a more specific concept is in a taxonomic relationship with a more general concept. In order to effectively process these constructions, we exploit underspecified syntactic analysis and structured domain knowledge from the Unified Medical Language System (UMLS). After introducing the syntactic processing on which our system depends, we focus on the UMLS knowledge that supports interpretation of hypernymic propositions. We first use semantic groups from the Semantic Network to ensure that the two concepts involved are compatible; hierarchical information in the Metathesaurus then determines which concept is more general and which more specific. A preliminary evaluation of a sample based on the semantic group Chemicals and Drugs provides 83% precision. An error analysis was conducted and potential solutions to the problems encountered are presented. The research discussed here serves as a paradigm for investigating the interaction between domain knowledge and linguistic structure in natural language processing, and could also make a contribution to research on automatic processing of discourse structure. Additional implications of the system we present include its integration in advanced semantic interpretation processors for biomedical text and its use for information extraction in specific domains. The approach has the potential to support a range of applications, including information retrieval and ontology engineering. |
|---|---|
| AbstractList | Interpretation of semantic propositions in free-text documents such as MEDLINE citations would provide valuable support for biomedical applications, and several approaches to semantic interpretation are being pursued in the biomedical informatics community. In this paper, we describe a methodology for interpreting linguistic structures that encode hypernymic propositions, in which a more specific concept is in a taxonomic relationship with a more general concept. In order to effectively process these constructions, we exploit underspecified syntactic analysis and structured domain knowledge from the Unified Medical Language System (UMLS). After introducing the syntactic processing on which our system depends, we focus on the UMLS knowledge that supports interpretation of hypernymic propositions. We first use semantic groups from the Semantic Network to ensure that the two concepts involved are compatible; hierarchical information in the Metathesaurus then determines which concept is more general and which more specific. A preliminary evaluation of a sample based on the semantic group Chemicals and Drugs provides 83% precision. An error analysis was conducted and potential solutions to the problems encountered are presented. The research discussed here serves as a paradigm for investigating the interaction between domain knowledge and linguistic structure in natural language processing, and could also make a contribution to research on automatic processing of discourse structure. Additional implications of the system we present include its integration in advanced semantic interpretation processors for biomedical text and its use for information extraction in specific domains. The approach has the potential to support a range of applications, including information retrieval and ontology engineering. Interpretation of semantic propositions in free-text documents such as MEDLINE citations would provide valuable support for biomedical applications, and several approaches to semantic interpretation are being pursued in the biomedical informatics community. In this paper, we describe a methodology for interpreting linguistic structures that encode hypernymic propositions, in which a more specific concept is in a taxonomic relationship with a more general concept. In order to effectively process these constructions, we exploit underspecified syntactic analysis and structured domain knowledge from the Unified Medical Language System (UMLS). After introducing the syntactic processing on which our system depends, we focus on the UMLS knowledge that supports interpretation of hypernymic propositions. We first use semantic groups from the Semantic Network to ensure that the two concepts involved are compatible; hierarchical information in the Metathesaurus then determines which concept is more general and which more specific. A preliminary evaluation of a sample based on the semantic group Chemicals and Drugs provides 83% precision. An error analysis was conducted and potential solutions to the problems encountered are presented. The research discussed here serves as a paradigm for investigating the interaction between domain knowledge and linguistic structure in natural language processing, and could also make a contribution to research on automatic processing of discourse structure. Additional implications of the system we present include its integration in advanced semantic interpretation processors for biomedical text and its use for information extraction in specific domains. The approach has the potential to support a range of applications, including information retrieval and ontology engineering.Interpretation of semantic propositions in free-text documents such as MEDLINE citations would provide valuable support for biomedical applications, and several approaches to semantic interpretation are being pursued in the biomedical informatics community. In this paper, we describe a methodology for interpreting linguistic structures that encode hypernymic propositions, in which a more specific concept is in a taxonomic relationship with a more general concept. In order to effectively process these constructions, we exploit underspecified syntactic analysis and structured domain knowledge from the Unified Medical Language System (UMLS). After introducing the syntactic processing on which our system depends, we focus on the UMLS knowledge that supports interpretation of hypernymic propositions. We first use semantic groups from the Semantic Network to ensure that the two concepts involved are compatible; hierarchical information in the Metathesaurus then determines which concept is more general and which more specific. A preliminary evaluation of a sample based on the semantic group Chemicals and Drugs provides 83% precision. An error analysis was conducted and potential solutions to the problems encountered are presented. The research discussed here serves as a paradigm for investigating the interaction between domain knowledge and linguistic structure in natural language processing, and could also make a contribution to research on automatic processing of discourse structure. Additional implications of the system we present include its integration in advanced semantic interpretation processors for biomedical text and its use for information extraction in specific domains. The approach has the potential to support a range of applications, including information retrieval and ontology engineering. |
| Author | Rindflesch, Thomas C Fiszman, Marcelo |
| Author_xml | – sequence: 1 givenname: Thomas C surname: Rindflesch fullname: Rindflesch, Thomas C email: tcr@nlm.nih.gov – sequence: 2 givenname: Marcelo surname: Fiszman fullname: Fiszman, Marcelo |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/14759819$$D View this record in MEDLINE/PubMed |
| BookMark | eNqFkctu1TAQhi1URC_wAGyQV-xO8OTmBFao4iZVYlPWluOMWx8SO9hO4bwHD8xEp3TBoqxmLH__b88_5-zEB4-MvQRRgID2zb7YD64ohagKgILKE3YGTVXuRN2Jk4e-rU_ZeUp7IQCapn3GTqGWTd9Bf8Z-X98idz5j1Ca74HmwfAyzdp5_9-HnhOMNcu1HPjl_s7qUneEpx9XkNW5C7jV1euKTpntN8BKDwZQIf3s0XiJmOvHbw4LRH2ZyIGYJyW0Pps1kcGHG0RnyyfgrP2dPrZ4SvrivF-zbxw_Xl593V18_fbl8f7UzVSfyTmptTTsA1rY1pixb20loZCXGXo_DIHG0smqaxsDY2x616GsEW1vT6MGUQ11dsNdHX_rPjxVTVrNLBieaBcOaFLm1XSur_4IgpSh72RH46h5cB5pILdHNOh7U38AJkEfAxJBSRKuMy3oLIkftJgVCbatVe0WrVdtqFYCiQkr4R_lg_ojm3VGDlOKdw6iScegNZR3RZDUG94j6D0ONwQE |
| CitedBy_id | crossref_primary_10_1186_1471_2105_12_355 crossref_primary_10_1186_s12859_019_2989_9 crossref_primary_10_1093_jamiaopen_ooy021 crossref_primary_10_1197_jamia_M2314 crossref_primary_10_1016_j_jbi_2013_06_004 crossref_primary_10_1186_1471_2105_14_71 crossref_primary_10_1093_jamia_ocx090 crossref_primary_10_1016_j_jbi_2023_104405 crossref_primary_10_1093_bioinformatics_btm196 crossref_primary_10_1007_s11192_018_2989_y crossref_primary_10_1093_jamia_ocv002 crossref_primary_10_3389_fmed_2019_00066 crossref_primary_10_2196_32730 crossref_primary_10_1186_s12859_016_1009_6 crossref_primary_10_4338_ACI_2016_11_RA_0188 crossref_primary_10_1016_j_datak_2014_09_002 crossref_primary_10_1145_3592597 crossref_primary_10_1093_jamia_ocy077 crossref_primary_10_1371_journal_pone_0226176 crossref_primary_10_1080_15424065_2015_1001964 crossref_primary_10_2147_DDDT_S270379 crossref_primary_10_1038_s41467_025_62783_x crossref_primary_10_1186_1471_2105_10_S9_S13 crossref_primary_10_1108_LHT_08_2019_0170 crossref_primary_10_1016_j_jbi_2012_04_011 crossref_primary_10_1038_s41746_022_00730_6 crossref_primary_10_1016_j_jbi_2016_01_003 crossref_primary_10_3414_ME15_01_0108 crossref_primary_10_1186_s12911_019_0752_9 crossref_primary_10_1016_j_ipm_2019_03_001 crossref_primary_10_1186_s12911_022_01848_z crossref_primary_10_1186_s12911_017_0465_x crossref_primary_10_1109_TCBB_2020_3003947 crossref_primary_10_1016_j_jbi_2019_103141 crossref_primary_10_1186_s12859_019_2808_3 crossref_primary_10_1186_1471_2105_15_64 crossref_primary_10_1136_amiajnl_2013_002443 crossref_primary_10_1186_s12911_019_0764_5 crossref_primary_10_1016_j_eswa_2024_126215 crossref_primary_10_1258_jtt_2008_007007 crossref_primary_10_1093_bib_bbad445 crossref_primary_10_1186_1471_2105_10_S9_S8 crossref_primary_10_1186_s12859_024_05812_8 crossref_primary_10_3233_JIFS_179315 crossref_primary_10_1016_j_jbi_2017_03_003 crossref_primary_10_1016_j_joi_2017_12_004 crossref_primary_10_1016_j_jbi_2022_104120 crossref_primary_10_1016_j_jbi_2019_103275 crossref_primary_10_1109_TCBB_2020_2979959 crossref_primary_10_1016_j_jbi_2018_05_019 crossref_primary_10_1186_1471_2105_12_S3_S3 crossref_primary_10_1186_1755_8794_7_7 crossref_primary_10_1186_s12911_023_02271_8 crossref_primary_10_1016_j_imlet_2025_107088 crossref_primary_10_1186_s12859_023_05373_2 crossref_primary_10_1038_psp_2014_37 crossref_primary_10_1111_j_1468_0394_2010_00575_x crossref_primary_10_1055_s_0041_1733945 crossref_primary_10_1093_bib_bbw001 crossref_primary_10_1186_s12911_019_0934_5 crossref_primary_10_1093_bib_bbac543 crossref_primary_10_1186_s12859_018_2339_3 crossref_primary_10_1016_j_jbi_2012_07_003 crossref_primary_10_1016_j_cageo_2023_105416 crossref_primary_10_1186_1472_6947_12_41 crossref_primary_10_1002_adfm_202201437 crossref_primary_10_1016_j_jbi_2009_02_002 crossref_primary_10_1186_s12911_019_0736_9 crossref_primary_10_1002_aris_2011_1440450110 crossref_primary_10_1016_j_csbj_2019_02_002 crossref_primary_10_1186_s13326_016_0086_9 crossref_primary_10_1016_j_jbi_2008_12_007 crossref_primary_10_1016_j_imu_2019_100181 crossref_primary_10_1186_s12859_019_3297_0 crossref_primary_10_1016_j_jbi_2014_05_007 crossref_primary_10_2196_18323 crossref_primary_10_1186_s12859_015_0472_9 crossref_primary_10_1016_j_jbi_2020_103571 crossref_primary_10_1186_s12859_022_04892_8 crossref_primary_10_1186_s13023_021_01936_9 crossref_primary_10_1186_1471_2105_14_208 crossref_primary_10_1186_1471_2105_9_78 crossref_primary_10_1016_j_jbi_2025_104894 crossref_primary_10_1371_journal_pcbi_1003666 crossref_primary_10_1016_j_jbi_2014_01_004 crossref_primary_10_3390_ijerph15061113 crossref_primary_10_1016_j_jbi_2010_03_003 crossref_primary_10_1186_s12911_018_0635_5 crossref_primary_10_1016_j_jbi_2016_11_004 crossref_primary_10_1186_s13326_015_0022_4 crossref_primary_10_1002_asi_22999 crossref_primary_10_1016_j_jbi_2021_103719 crossref_primary_10_1109_ACCESS_2018_2886311 crossref_primary_10_1186_s12911_020_01274_z crossref_primary_10_3390_app10217831 crossref_primary_10_1186_s12859_017_1641_9 crossref_primary_10_1016_j_phrs_2020_104797 crossref_primary_10_3390_bdcc9060162 crossref_primary_10_3390_su15054216 crossref_primary_10_1177_01655515251330617 crossref_primary_10_1155_2016_3594937 crossref_primary_10_1371_journal_pone_0023862 crossref_primary_10_3389_fbioe_2019_00156 crossref_primary_10_1186_s12911_020_01318_4 crossref_primary_10_1007_s10916_016_0544_z crossref_primary_10_1007_s40264_019_00872_9 crossref_primary_10_1016_j_joi_2015_06_004 crossref_primary_10_1093_bioadv_vbab012 crossref_primary_10_1002_asi_21414 crossref_primary_10_1016_j_jbi_2016_06_002 crossref_primary_10_1016_j_jbi_2017_08_011 crossref_primary_10_1371_journal_pone_0076384 crossref_primary_10_1186_1471_2105_9_S11_S3 crossref_primary_10_1016_j_cmpb_2009_10_003 crossref_primary_10_1007_s00799_018_0256_8 crossref_primary_10_1007_s10115_022_01663_y crossref_primary_10_1016_j_compbiomed_2016_01_014 crossref_primary_10_1016_j_jbi_2003_11_005 crossref_primary_10_1016_j_jbi_2014_06_006 crossref_primary_10_1016_j_jbi_2014_06_009 crossref_primary_10_1186_s12911_024_02496_1 crossref_primary_10_1016_j_jbi_2003_11_002 crossref_primary_10_1016_j_jbi_2009_11_001 crossref_primary_10_1016_j_knosys_2016_04_015 crossref_primary_10_1016_j_jbi_2023_104368 crossref_primary_10_1147_JRD_2018_2888975 crossref_primary_10_1016_j_artmed_2011_06_005 crossref_primary_10_2196_14204 crossref_primary_10_1371_journal_pone_0179926 crossref_primary_10_2196_48115 crossref_primary_10_1016_j_jbi_2013_08_005 crossref_primary_10_1371_journal_pone_0149621 crossref_primary_10_1016_j_jbi_2010_03_011 crossref_primary_10_1186_s12859_019_2815_4 crossref_primary_10_1161_HYPERTENSIONAHA_123_22347 crossref_primary_10_1155_2015_428195 crossref_primary_10_1016_j_jbi_2011_08_009 crossref_primary_10_1155_2013_848952 crossref_primary_10_2196_28842 crossref_primary_10_1016_j_ipm_2025_104216 crossref_primary_10_1016_j_jbi_2021_103706 crossref_primary_10_1186_s12859_014_0365_3 crossref_primary_10_3389_frma_2018_00007 crossref_primary_10_1007_s10115_019_01351_4 crossref_primary_10_4137_CIN_S13889 crossref_primary_10_1093_jamia_ocab143 crossref_primary_10_1073_pnas_1806643115 crossref_primary_10_1002_widm_1302 crossref_primary_10_1186_s12911_020_1112_5 crossref_primary_10_1186_s12859_015_0538_8 crossref_primary_10_1197_jamia_M3028 crossref_primary_10_3389_fgene_2022_855739 crossref_primary_10_1186_s12859_020_3517_7 crossref_primary_10_1002_med_21847 crossref_primary_10_1177_1176934319879920 crossref_primary_10_1093_bib_bbn035 crossref_primary_10_1016_j_jbi_2014_07_014 crossref_primary_10_1186_s12859_017_1775_9 crossref_primary_10_1186_s12859_018_2167_5 crossref_primary_10_1016_j_pcad_2024_10_010 crossref_primary_10_1002_asi_23876 crossref_primary_10_1007_s41109_021_00435_x crossref_primary_10_1093_jamia_ocw030 crossref_primary_10_1186_s12859_015_0549_5 crossref_primary_10_1016_j_jbi_2014_07_011 crossref_primary_10_1016_j_jbi_2018_11_014 crossref_primary_10_1093_bib_bbx057 crossref_primary_10_1016_j_asoc_2021_107347 crossref_primary_10_1007_s11042_021_11621_5 crossref_primary_10_1093_bioinformatics_btae519 crossref_primary_10_1016_j_jbi_2008_10_002 crossref_primary_10_1371_journal_pcbi_1004216 crossref_primary_10_1016_j_jbi_2013_07_007 crossref_primary_10_1016_j_jbi_2018_05_003 crossref_primary_10_1186_s13326_018_0192_y crossref_primary_10_2196_11301 crossref_primary_10_1109_ACCESS_2023_3341756 crossref_primary_10_1197_jamia_M2996 crossref_primary_10_1007_s12539_020_00412_5 crossref_primary_10_1016_j_artmed_2016_01_003 crossref_primary_10_1145_2555810_2555811 crossref_primary_10_1197_jamia_M2080 crossref_primary_10_1016_j_artmed_2006_07_012 crossref_primary_10_1016_j_joi_2021_101188 crossref_primary_10_1016_j_compbiolchem_2025_108364 crossref_primary_10_1016_j_jbi_2017_05_018 crossref_primary_10_1093_jamia_ocv166 crossref_primary_10_1016_j_jbi_2019_103172 crossref_primary_10_1197_jamia_M2401 crossref_primary_10_1186_1472_6947_10_29 crossref_primary_10_1016_j_ijmedinf_2018_11_009 crossref_primary_10_1016_j_knosys_2023_110575 crossref_primary_10_1197_jamia_M2407 crossref_primary_10_1007_s11192_021_03892_4 crossref_primary_10_1136_amiajnl_2014_002954 crossref_primary_10_1016_j_jbi_2015_12_014 crossref_primary_10_1016_j_jbi_2024_104658 crossref_primary_10_1186_1471_2105_14_182 crossref_primary_10_1016_j_jbi_2025_104810 crossref_primary_10_1186_1471_2105_14_181 crossref_primary_10_1093_jamia_ocu048 crossref_primary_10_1371_journal_pone_0102188 crossref_primary_10_1016_j_jbi_2015_05_010 crossref_primary_10_1016_j_ailsci_2021_100005 crossref_primary_10_1016_j_jbi_2017_04_014 crossref_primary_10_1093_ije_dyx251 crossref_primary_10_2217_pgs_10_136 crossref_primary_10_1016_j_jbi_2021_103696 crossref_primary_10_1145_3365756 crossref_primary_10_1016_j_jbi_2012_09_004 crossref_primary_10_1093_jamia_ocab176 crossref_primary_10_3233_SW_223294 crossref_primary_10_1016_j_artmed_2015_04_007 crossref_primary_10_1016_j_jbi_2023_104464 crossref_primary_10_1016_j_jbi_2015_01_014 crossref_primary_10_1186_1471_2105_12_486 crossref_primary_10_1016_j_jbi_2015_05_004 crossref_primary_10_1007_s11192_020_03811_z crossref_primary_10_1016_j_ijmedinf_2005_07_025 crossref_primary_10_1371_journal_pone_0180539 crossref_primary_10_1016_j_compbiomed_2025_109808 crossref_primary_10_1186_1471_2105_11_S2_S3 crossref_primary_10_1016_j_ins_2012_05_027 crossref_primary_10_1016_j_procs_2014_09_100 crossref_primary_10_1186_1471_2105_8_264 crossref_primary_10_1186_s12859_022_04932_3 crossref_primary_10_3390_fi13010014 crossref_primary_10_1016_j_jbi_2014_08_004 |
| Cites_doi | 10.7326/0003-4819-122-9-199505010-00007 10.1093/bioinformatics/17.suppl_1.S74 10.1136/jamia.1994.95236146 10.1136/jamia.1994.95236145 10.1016/0169-2607(94)90020-5 10.3115/974147.974173 10.1197/jamia.M0913 10.1136/jamia.2000.0070593 10.1016/S1532-0464(02)00528-2 10.1016/S1532-0464(03)00013-3 10.1097/00001888-199908000-00012 10.3115/1118149.1118154 10.3115/1073083.1073124 10.3115/974499.974523 10.1145/379437.379675 10.1006/cbmr.1999.1535 10.1109/TITB.2002.1006296 10.1145/505168.505190 10.1016/S1386-5056(02)00053-9 10.1136/jamia.1994.95153434 10.1136/jamia.1998.0050001 10.1109/MC.1983.1654194 10.1055/s-0038-1634373 10.3115/992133.992154 10.1016/S1386-5056(98)00091-4 10.1136/jamia.1999.0060143 10.3115/1118149.1118159 10.3115/1073083.1073125 10.1006/cbmr.1996.0026 10.2307/30141996 10.1016/S0933-3657(98)00044-X |
| ContentType | Journal Article |
| Copyright | 2003 |
| Copyright_xml | – notice: 2003 |
| DBID | 6I. AAFTH AAYXX CITATION CGR CUY CVF ECM EIF NPM 7QO 8FD FR3 P64 7X8 |
| DOI | 10.1016/j.jbi.2003.11.003 |
| DatabaseName | ScienceDirect Open Access Titles Elsevier:ScienceDirect:Open Access CrossRef Medline MEDLINE MEDLINE (Ovid) MEDLINE MEDLINE PubMed Biotechnology Research Abstracts Technology Research Database Engineering Research Database Biotechnology and BioEngineering Abstracts MEDLINE - Academic |
| DatabaseTitle | CrossRef MEDLINE Medline Complete MEDLINE with Full Text PubMed MEDLINE (Ovid) Engineering Research Database Biotechnology Research Abstracts Technology Research Database Biotechnology and BioEngineering Abstracts MEDLINE - Academic |
| DatabaseTitleList | Engineering Research Database MEDLINE MEDLINE - Academic |
| Database_xml | – sequence: 1 dbid: NPM name: PubMed url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed sourceTypes: Index Database – sequence: 2 dbid: 7X8 name: MEDLINE - Academic url: https://search.proquest.com/medline sourceTypes: Aggregation Database |
| DeliveryMethod | fulltext_linktorsrc |
| Discipline | Medicine Engineering Public Health |
| EISSN | 1532-0480 |
| EndPage | 477 |
| ExternalDocumentID | 14759819 10_1016_j_jbi_2003_11_003 S1532046403001175 |
| Genre | Research Support, U.S. Gov't, Non-P.H.S Research Support, U.S. Gov't, P.H.S Comparative Study Journal Article |
| GeographicLocations | United States |
| GeographicLocations_xml | – name: United States |
| GroupedDBID | --- --K --M -~X .DC .GJ .~1 0R~ 1B1 1RT 1~. 1~5 29J 4.4 457 4G. 53G 5GY 5VS 6I. 7-5 71M 8P~ AACTN AAEDT AAEDW AAFTH AAIAV AAIKJ AAKOC AALRI AAOAW AAQFI AAQXK AAWTL AAXUO AAYFN ABBOA ABBQC ABFRF ABJNI ABLVK ABMAC ABMZM ABVKL ABXDB ABYKQ ACDAQ ACGFO ACGFS ACNNM ACRLP ACZNC ADBBV ADEZE ADFGL ADMUD AEBSH AEFWE AEKER AENEX AEXQZ AFKWA AFTJW AFXIZ AGHFR AGUBO AGYEJ AHZHX AIALX AIEXJ AIKHN AITUG AJBFU AJOXV AJRQY ALMA_UNASSIGNED_HOLDINGS AMFUW AMRAJ ANZVX AOUOD ASPBG AVWKF AXJTR AZFZN BAWUL BKOJK BLXMC BNPGV CAG COF CS3 DIK DM4 DU5 EBS EFBJH EFLBG EJD EO8 EO9 EP2 EP3 F5P FDB FEDTE FGOYB FIRID FNPLU FYGXN G-Q G8K GBLVA GBOLZ HVGLF HZ~ IHE IXB J1W KOM LCYCR LG5 M41 MO0 N9A NCXOZ O-L O9- OAUVE OK1 OZT P-8 P-9 PC. Q38 R2- RIG ROL RPZ SDF SDG SDP SES SEW SPC SPCBC SSH SSV SSZ T5K UAP UHS UNMZH XPP ZGI ZMT ZU3 ~G- 9DU AATTM AAXKI AAYWO AAYXX ABDPE ABWVN ACIEU ACLOT ACRPL ACVFH ADCNI ADNMO ADVLN AEIPS AEUPX AFJKZ AFPUW AGQPQ AIGII AIIUN AKBMS AKRWK AKYEP ANKPU APXCP CITATION EFKBS ~HD 0SF CGR CUY CVF ECM EIF NPM 7QO 8FD FR3 P64 7X8 |
| ID | FETCH-LOGICAL-c380t-7aafc6b1e4f6cc226f8715730d9adbb7edf73555c1d9f9ea094e1f4fc5abc2b43 |
| ISICitedReferencesCount | 332 |
| ISICitedReferencesURI | http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000189096000005&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| ISSN | 1532-0464 |
| IngestDate | Sat Sep 27 19:02:00 EDT 2025 Mon Oct 06 18:00:20 EDT 2025 Wed Feb 19 01:43:57 EST 2025 Tue Nov 18 20:24:48 EST 2025 Sat Nov 29 06:23:05 EST 2025 Fri Feb 23 02:33:46 EST 2024 |
| IsDoiOpenAccess | true |
| IsOpenAccess | true |
| IsPeerReviewed | true |
| IsScholarly | true |
| Issue | 6 |
| Keywords | Semantic processing Natural language processing Information extraction Knowledge representation |
| Language | English |
| License | http://www.elsevier.com/open-access/userlicense/1.0 https://www.elsevier.com/tdm/userlicense/1.0 https://www.elsevier.com/open-access/userlicense/1.0 |
| LinkModel | OpenURL |
| MergedId | FETCHMERGED-LOGICAL-c380t-7aafc6b1e4f6cc226f8715730d9adbb7edf73555c1d9f9ea094e1f4fc5abc2b43 |
| Notes | ObjectType-Article-2 SourceType-Scholarly Journals-1 ObjectType-Feature-1 content type line 23 |
| OpenAccessLink | https://dx.doi.org/10.1016/j.jbi.2003.11.003 |
| PMID | 14759819 |
| PQID | 17702978 |
| PQPubID | 23462 |
| PageCount | 16 |
| ParticipantIDs | proquest_miscellaneous_71568673 proquest_miscellaneous_17702978 pubmed_primary_14759819 crossref_citationtrail_10_1016_j_jbi_2003_11_003 crossref_primary_10_1016_j_jbi_2003_11_003 elsevier_sciencedirect_doi_10_1016_j_jbi_2003_11_003 |
| PublicationCentury | 2000 |
| PublicationDate | 2003-12-01 |
| PublicationDateYYYYMMDD | 2003-12-01 |
| PublicationDate_xml | – month: 12 year: 2003 text: 2003-12-01 day: 01 |
| PublicationDecade | 2000 |
| PublicationPlace | United States |
| PublicationPlace_xml | – name: United States |
| PublicationTitle | Journal of biomedical informatics |
| PublicationTitleAlternate | J Biomed Inform |
| PublicationYear | 2003 |
| Publisher | Elsevier Inc |
| Publisher_xml | – name: Elsevier Inc |
| References | Hripcsak, Friedman, Alderson, DuMouchel, Johnson, Clayton (BIB5) 1995; 122 Rector, Nowlan (BIB28) 1994; 45 Chen, Perl, Halper, Geller, Gu (BIB48) 2002; 6 Spyns (BIB11) 1996; 35 Elkins, Friedman, Boden-Albala, Sacco, Hripcsak (BIB25) 2000; 33 Gundersen, Haug, Pryor, van Bree, Koehler, Bauer, Clemons (BIB31) 1996; 29 Friedman, Liu, Shagina, Johnson, Hripcsak (BIB23) 2001 Zweigenbaum, Bouaud, Bachimont, Charlet, Boisvieux (BIB34) 1997 Perl, Chen, Halper, Geller, Zhang, Peng (BIB49) 2002; 35 Brachman (BIB39) 1983; 16 Grishman, Huttunen, Yangarber (BIB7) 2002; 35 Johnson, Aguirre, Peng, Cimino (BIB26) 1993 Baud, Lovis, Rassinoux, Scherrer (BIB17) 1998; 37 Amaral, Roberts, Rector (BIB19) 2000 Klavans, J.L., Brian W. Extracting taxonomic relationships from online definitional sources using LEXING. In: Proceedings of the First ACM/IEEE-CS Joint Conference on Digital Libraries (JCDL), Roanoke, Virginia; 2001. p. 257–8 Friedman, Hripcsak (BIB12) 1999; 74 Zweigenbaum, Bachimont, Bouaud, Charlet, Boisvieux (BIB33) 1995 Chafe (BIB43) 1975 Rosario B, Hearst M, Fillmore C. The descent of hierarchy, and selection in relational semantics. In: Proceedings of the Workshop on Natural Language Processing in the Biomedical Domain, Association for Computational Linguistics; 2002. p. 247–54 Fiszman, Haug (BIB30) 2000 Hahn, Romacker, Schulz (BIB42) 1999; 53 Friedman (BIB21) 2000 Fiszman, Chapman, Aronsky, Evans, Haug (BIB6) 2000; 7 Friedman, Alderson, Austin, Cimino, Johnson (BIB20) 1994; 1 Burgun A, Bodenreider O. Aspects of the taxonomic relation in the biomedical domain. In: Collected papers from the Second International Conference “Formal Ontology in Information System”; 2001 p. 222–33 Sager, Lyman, Bucknall, Nhan, Tick (BIB22) 1994; 1 Hahn, Romacker, Schulz (BIB35) 1999; 15 Srinivasan, Rindflesch (BIB16) 2002 Hahn, Romacker, Schulz (BIB36) 2000 McCray, Burgun, Bodenreider (BIB47) 2001; 10 Rassinoux, Wagner, Lovis, Baud, Rector, Scherrer (BIB27) 1995 McCray AT. Representing biomedical knowledge in the UMLS Semantic Network. High-performance medical libraries: advances in information management for the virtual era. Meckler Publishing; 1993. p. 45–55 Romacker, Schulz, Hahn (BIB37) 1999 Bodenreider O, Burgun A. Characterizing the definitions of anatomical concepts in WordNet and specialized sources. In: Proceedings of the First Global WordNet Conference; 2002. p. 223–30 Cutting D, Kupiec J, Pedersen J, Sibun P. A practical part-of-speech tagger. In: Proceedings of the Third Conference on Applied Natural Language Processing; 1992. p. 133–40 Liu, Aronson, Friedman (BIB56) 2002 Craven, Kumlien (BIB3) 1999 Aronson, Bodenreider, Chang, Humphrey, Mork, Nelson, Rindflesch, Wilbur (BIB53) 2000 Rindflesch, Bean, Sneiderman (BIB13) 2000 Friedman, Kra, Yu, Krauthammer, Rzhetsky (BIB9) 2001; 17 Rindflesch, Tanabe, Weinstein, Hunter (BIB14) 2000 Hahn, Romacker, Schulz (BIB8) 2002; 67 Humphreys, Lindberg, Schoolman, Barnett (BIB18) 1998; 5 Yu, Hripcsak, Friedman (BIB58) 2002; 9 Hripcsak, Kuperman, Friedman, Heitjan (BIB59) 1999; 6 Gildea D, Palmer M. The necessity of parsing for predicate argument recognition. In: Proceedings of the 40th Annual Meeting of the Association for Computational Linguistic; 2002. p. 146–239 Haynes, Wilczynski, McKibbon, Walker, Sinclair (BIB1) 1994; 1 Rindflesch TC, Rajan J, Hunter L. Extracting molecular binding relationships from biomedical text. In: Proceedings of the Sixth Applied Natural Language Processing Conference, Association for Computational Linguistics; 2000. p. 188–95 Aronson (BIB52) 2001 Haug, Koehler, Lau, Wang, Rocha, Huff (BIB29) 1994 Mendonca EA, Johnson SB, Seol YH, Cimino JJ. Analyzing the semantics of patient data to rank records of literature retrieval. In: Proceedings of the Workshop on Natural Language Processing in the Biomedical Domain of the Association of Computational Linguistics; 2002. p. 69–75 Wren, Garner (BIB57) 2002; 41 Christensen L, Haug PJ, Fiszman M. MPLUS: a probabilistic medical language understanding system. In: Proceedings of the Workshop on Natural Language Processing in the Biomedical Domain, Association for Computational Linguistics; 2002. p. 29–36 Knirsch, Jain, Pablos-Mendez, Friedman, Hripcsak (BIB24) 1998; 19 Hearst, MA. Automatic acquisition of hyponyms from large text corpora. In: Proceedings of the Fourteenth International Conference on Computational Linguistics (COLING); 1992. p. 539–45 Zhang, Perl, Halper, Geller, Cimino (BIB50) 2002 Rindflesch TC. Integrating natural language processing and biomedical domain knowledge for increased information retrieval effectiveness. in: Proceedings of the Fifth Annual Dual-use Technologies and Applications Conference; 1995. p. 260–5 McCray, Srinivasan, Browne (BIB45) 1994 Rosario B, Hearst M. Classifying the semantic relations in noun compounds via a domain-specific lexical hierarchy. In: Proceedings of Conference on Empirical Methods in Natural Language Processing; June 2001. p. 82–90 Bodenreider O, Burgun A, Rindflesch TC. Lexically suggested hyponymic relations among medical terms and their representation in the UMLS. In: Proceedings of the Conference on Terminology and Artificial Intelligence; 2001. p. 11–21 Friedman (10.1016/j.jbi.2003.11.003_BIB12) 1999; 74 10.1016/j.jbi.2003.11.003_BIB41 10.1016/j.jbi.2003.11.003_BIB40 Friedman (10.1016/j.jbi.2003.11.003_BIB20) 1994; 1 Hripcsak (10.1016/j.jbi.2003.11.003_BIB5) 1995; 122 Rindflesch (10.1016/j.jbi.2003.11.003_BIB14) 2000 Liu (10.1016/j.jbi.2003.11.003_BIB56) 2002 Friedman (10.1016/j.jbi.2003.11.003_BIB9) 2001; 17 Fiszman (10.1016/j.jbi.2003.11.003_BIB30) 2000 Zhang (10.1016/j.jbi.2003.11.003_BIB50) 2002 Elkins (10.1016/j.jbi.2003.11.003_BIB25) 2000; 33 Hahn (10.1016/j.jbi.2003.11.003_BIB36) 2000 Chen (10.1016/j.jbi.2003.11.003_BIB48) 2002; 6 Humphreys (10.1016/j.jbi.2003.11.003_BIB18) 1998; 5 McCray (10.1016/j.jbi.2003.11.003_BIB47) 2001; 10 Hahn (10.1016/j.jbi.2003.11.003_BIB8) 2002; 67 Hripcsak (10.1016/j.jbi.2003.11.003_BIB59) 1999; 6 10.1016/j.jbi.2003.11.003_BIB46 Aronson (10.1016/j.jbi.2003.11.003_BIB53) 2000 10.1016/j.jbi.2003.11.003_BIB44 Rector (10.1016/j.jbi.2003.11.003_BIB28) 1994; 45 Gundersen (10.1016/j.jbi.2003.11.003_BIB31) 1996; 29 Romacker (10.1016/j.jbi.2003.11.003_BIB37) 1999 Rindflesch (10.1016/j.jbi.2003.11.003_BIB13) 2000 Haug (10.1016/j.jbi.2003.11.003_BIB29) 1994 Grishman (10.1016/j.jbi.2003.11.003_BIB7) 2002; 35 Chafe (10.1016/j.jbi.2003.11.003_BIB43) 1975 Zweigenbaum (10.1016/j.jbi.2003.11.003_BIB33) 1995 10.1016/j.jbi.2003.11.003_BIB38 Haynes (10.1016/j.jbi.2003.11.003_BIB1) 1994; 1 Aronson (10.1016/j.jbi.2003.11.003_BIB52) 2001 10.1016/j.jbi.2003.11.003_BIB32 Perl (10.1016/j.jbi.2003.11.003_BIB49) 2002; 35 Hahn (10.1016/j.jbi.2003.11.003_BIB35) 1999; 15 Wren (10.1016/j.jbi.2003.11.003_BIB57) 2002; 41 10.1016/j.jbi.2003.11.003_BIB60 Johnson (10.1016/j.jbi.2003.11.003_BIB26) 1993 Fiszman (10.1016/j.jbi.2003.11.003_BIB6) 2000; 7 Friedman (10.1016/j.jbi.2003.11.003_BIB21) 2000 Baud (10.1016/j.jbi.2003.11.003_BIB17) 1998; 37 Rassinoux (10.1016/j.jbi.2003.11.003_BIB27) 1995 Spyns (10.1016/j.jbi.2003.11.003_BIB11) 1996; 35 10.1016/j.jbi.2003.11.003_BIB51 Sager (10.1016/j.jbi.2003.11.003_BIB22) 1994; 1 Amaral (10.1016/j.jbi.2003.11.003_BIB19) 2000 Zweigenbaum (10.1016/j.jbi.2003.11.003_BIB34) 1997 Brachman (10.1016/j.jbi.2003.11.003_BIB39) 1983; 16 McCray (10.1016/j.jbi.2003.11.003_BIB45) 1994 Knirsch (10.1016/j.jbi.2003.11.003_BIB24) 1998; 19 Hahn (10.1016/j.jbi.2003.11.003_BIB42) 1999; 53 Srinivasan (10.1016/j.jbi.2003.11.003_BIB16) 2002 Yu (10.1016/j.jbi.2003.11.003_BIB58) 2002; 9 Craven (10.1016/j.jbi.2003.11.003_BIB3) 1999 10.1016/j.jbi.2003.11.003_BIB15 Friedman (10.1016/j.jbi.2003.11.003_BIB23) 2001 10.1016/j.jbi.2003.11.003_BIB4 10.1016/j.jbi.2003.11.003_BIB55 10.1016/j.jbi.2003.11.003_BIB2 10.1016/j.jbi.2003.11.003_BIB10 10.1016/j.jbi.2003.11.003_BIB54 |
| References_xml | – volume: 5 start-page: 1 year: 1998 end-page: 11 ident: BIB18 article-title: The unified medical language system: an informatics research collaboration publication-title: J. Am. Med. Inform. Assoc. – reference: Gildea D, Palmer M. The necessity of parsing for predicate argument recognition. In: Proceedings of the 40th Annual Meeting of the Association for Computational Linguistic; 2002. p. 146–239 – volume: 17 start-page: S74 year: 2001 end-page: S82 ident: BIB9 article-title: GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles publication-title: Bioinformatics – volume: 37 start-page: 315 year: 1998 end-page: 326 ident: BIB17 article-title: Alternative ways for knowledge collection, indexing and robust language retrieval publication-title: Methods Inf. Med. – start-page: 17 year: 2001 end-page: 21 ident: BIB52 article-title: Effective mapping of biomedical text to the UMLS Metathesaurus: The MetaMap program publication-title: Proc. AMIA Symp. – start-page: 330 year: 2000 end-page: 334 ident: BIB36 article-title: MEDSYNDIKATE—design considerations for an ontology-based medical text understanding system publication-title: Proc. AMIA Symp. – volume: 7 start-page: 593 year: 2000 end-page: 604 ident: BIB6 article-title: Automatic detection of acute bacterial pneumonia from chest X-ray reports publication-title: J. Am. Med. Inform. Assoc. – start-page: 77 year: 1999 end-page: 86 ident: BIB3 article-title: Constructing biological knowledge bases by extracting information from text sources publication-title: Proc. Int. Conf. Intell. Syst. Mol. Biol. – start-page: 76 year: 2000 end-page: 80 ident: BIB19 article-title: NLP techniques associated with the OpenGALEN ontology for semi-automatic textual extraction of medical knowledge: abstracting and mapping equivalent linguistic and logistic constructs publication-title: Proc. AMIA Symp. – volume: 45 start-page: 75 year: 1994 end-page: 78 ident: BIB28 article-title: The GALEN project publication-title: Comput. Methods Programs Biomed. – volume: 16 start-page: 30 year: 1983 end-page: 36 ident: BIB39 article-title: 1983. What IS-A is and isn’t: an analysis of taxonomic links in semantic networks publication-title: Computer – reference: Cutting D, Kupiec J, Pedersen J, Sibun P. A practical part-of-speech tagger. In: Proceedings of the Third Conference on Applied Natural Language Processing; 1992. p. 133–40 – start-page: 590 year: 1997 end-page: 594 ident: BIB34 article-title: Evaluating a normalized conceptual representation produced from natural language patient discharge summaries publication-title: Proc. AMIA Annu. Fall Symp. – volume: 35 start-page: 194 year: 2002 end-page: 212 ident: BIB49 article-title: The cohesive metaschema: a higher-level abstraction of the UMLS Semantic Network publication-title: J. Biomed. Inform. – volume: 33 start-page: 1 year: 2000 end-page: 10 ident: BIB25 article-title: Coding neuroradiology reports for the Northern Manhattan Stroke Study: a comparison of natural language processing and manual review publication-title: Comput. Biomed. Res. – reference: Rosario B, Hearst M. Classifying the semantic relations in noun compounds via a domain-specific lexical hierarchy. In: Proceedings of Conference on Empirical Methods in Natural Language Processing; June 2001. p. 82–90 – volume: 29 start-page: 351 year: 1996 end-page: 372 ident: BIB31 article-title: Development and evaluation of a computerized admission diagnoses encoding system publication-title: Comput. Biomed. Res. – start-page: 17 year: 2000 end-page: 21 ident: BIB53 article-title: The NLM indexing initiative publication-title: Proc. AMIA Symp. – start-page: 357 year: 1995 end-page: 361 ident: BIB33 article-title: A multi-lingual architecture for building a normalised conceptual representation from medical language publication-title: Proc. Annu. Symp. Comput. Appl. Med. Care – reference: Rindflesch TC, Rajan J, Hunter L. Extracting molecular binding relationships from biomedical text. In: Proceedings of the Sixth Applied Natural Language Processing Conference, Association for Computational Linguistics; 2000. p. 188–95 – start-page: 235 year: 2000 end-page: 239 ident: BIB30 article-title: Using medical language processing to support real-time evaluation of pneumonia guidelines publication-title: Proc. AMIA Symp. – reference: Hearst, MA. Automatic acquisition of hyponyms from large text corpora. In: Proceedings of the Fourteenth International Conference on Computational Linguistics (COLING); 1992. p. 539–45 – volume: 53 start-page: 1 year: 1999 end-page: 28 ident: BIB42 article-title: Discourse structures in medical reports—watch out! The generation of referentially coherent and valid text knowledge bases in the MEDSYNDIKATE system publication-title: Int. J. Med. Inf. – volume: 122 start-page: 681 year: 1995 end-page: 688 ident: BIB5 article-title: Unlocking clinical data from narrative reports: a study of natural language processing publication-title: Ann. Intern. Med. – volume: 67 start-page: 63 year: 2002 end-page: 74 ident: BIB8 article-title: MEDSYNDIKATE—a natural language system for the extraction of medical information from findings reports publication-title: Int. J. Med. Inf. – volume: 74 start-page: 890 year: 1999 end-page: 895 ident: BIB12 article-title: Natural language processing and its future in medicine publication-title: Acad. Med. – volume: 1 start-page: 447 year: 1994 end-page: 458 ident: BIB1 article-title: Developing optimal search strategies for detecting clinically sound studies in MEDLINE publication-title: J. Am. Med. Inform. Assoc. – volume: 35 start-page: 236 year: 2002 end-page: 246 ident: BIB7 article-title: Information extraction for enhanced access to disease outbreak reports publication-title: J. Biomed. Inform. – volume: 10 start-page: 216 year: 2001 end-page: 220 ident: BIB47 article-title: Aggregating UMLS semantic types for reducing conceptual complexity publication-title: Medinfo – volume: 15 start-page: 25 year: 1999 end-page: 51 ident: BIB35 article-title: How knowledge drives understanding—matching medical ontologies with the needs of medical language processing publication-title: Artif. Intell. Med. – reference: Burgun A, Bodenreider O. Aspects of the taxonomic relation in the biomedical domain. In: Collected papers from the Second International Conference “Formal Ontology in Information System”; 2001 p. 222–33 – reference: Bodenreider O, Burgun A. Characterizing the definitions of anatomical concepts in WordNet and specialized sources. In: Proceedings of the First Global WordNet Conference; 2002. p. 223–30 – volume: 35 start-page: 285 year: 1996 end-page: 301 ident: BIB11 article-title: Natural language processing in medicine: an overview publication-title: Methods Inf. Med. – volume: 19 start-page: 94 year: 1998 end-page: 100 ident: BIB24 article-title: Respiratory isolation of tuberculosis patients using clinical guidelines and an automated clinical decision support system publication-title: Infect Control Hosp. Epidemiol. – start-page: 925 year: 1999 end-page: 929 ident: BIB37 article-title: Streamlining semantic interpretation for medical narratives publication-title: Proc. AMIA Symp. – reference: McCray AT. Representing biomedical knowledge in the UMLS Semantic Network. High-performance medical libraries: advances in information management for the virtual era. Meckler Publishing; 1993. p. 45–55 – volume: 9 start-page: 262 year: 2002 end-page: 272 ident: BIB58 article-title: Mapping abbreviations to full forms in electronic articles publication-title: J. Am. Med. Inform. Assoc. – start-page: 247 year: 1994 end-page: 251 ident: BIB29 article-title: A natural language understanding system combining syntactic and semantic techniques publication-title: Proc. Annu. Symp. Comput. Appl. Med. Care – start-page: 704 year: 2000 end-page: 708 ident: BIB13 article-title: Argument identification for arterial branching predications asserted in cardiac catheterization reports publication-title: Proc. AMIA Symp. – start-page: 517 year: 2000 end-page: 528 ident: BIB14 article-title: EDGAR: extraction of drugs, genes and relations from the biomedical literature publication-title: Pac. Symp. Biocomput. – start-page: 189 year: 2001 end-page: 193 ident: BIB23 article-title: Evaluating the UMLS as a source of lexical knowledge for medical language processing publication-title: Proc. AMIA Symp. – start-page: 27 year: 1995 end-page: 31 ident: BIB27 article-title: Analysis of medical texts based on a sound medical model publication-title: Proc. Annu. Symp. Comput. Appl. Med. Care – reference: Rosario B, Hearst M, Fillmore C. The descent of hierarchy, and selection in relational semantics. In: Proceedings of the Workshop on Natural Language Processing in the Biomedical Domain, Association for Computational Linguistics; 2002. p. 247–54 – reference: Christensen L, Haug PJ, Fiszman M. MPLUS: a probabilistic medical language understanding system. In: Proceedings of the Workshop on Natural Language Processing in the Biomedical Domain, Association for Computational Linguistics; 2002. p. 29–36 – reference: Klavans, J.L., Brian W. Extracting taxonomic relationships from online definitional sources using LEXING. In: Proceedings of the First ACM/IEEE-CS Joint Conference on Digital Libraries (JCDL), Roanoke, Virginia; 2001. p. 257–8 – start-page: 939 year: 2002 end-page: 943 ident: BIB50 article-title: Enriching the Structure of the UMLS Semantic Network publication-title: Proc. AMIA Symp. – volume: 6 start-page: 102 year: 2002 end-page: 108 ident: BIB48 article-title: Partitioning the UMLS semantic network publication-title: IEEE Trans. Inf. Technol. Biomed. – start-page: 294 year: 1993 end-page: 298 ident: BIB26 article-title: Interpreting natural language queries using the UMLS publication-title: Proc. Annu. Symp. Comput. Appl. Med. Care – start-page: 722 year: 2002 end-page: 726 ident: BIB16 article-title: Exploring text mining from MEDLINE publication-title: Proc. AMIA Symp. – reference: Rindflesch TC. Integrating natural language processing and biomedical domain knowledge for increased information retrieval effectiveness. in: Proceedings of the Fifth Annual Dual-use Technologies and Applications Conference; 1995. p. 260–5 – volume: 1 start-page: 142 year: 1994 end-page: 160 ident: BIB22 article-title: Natural language processing and the representation of clinical data publication-title: J. Am. Med. Inform. Assoc. – reference: Mendonca EA, Johnson SB, Seol YH, Cimino JJ. Analyzing the semantics of patient data to rank records of literature retrieval. In: Proceedings of the Workshop on Natural Language Processing in the Biomedical Domain of the Association of Computational Linguistics; 2002. p. 69–75 – volume: 41 start-page: 426 year: 2002 end-page: 434 ident: BIB57 article-title: Heuristics for identification of acronym-definition patterns within text: towards an automated construction of comprehensive acronym-definition dictionaries publication-title: Methods Inf. Med. – volume: 6 start-page: 143 year: 1999 end-page: 150 ident: BIB59 article-title: A reliability study for evaluating information extraction from radiology reports publication-title: J. Am. Med. Inform. Assoc. – start-page: 464 year: 2002 end-page: 469 ident: BIB56 article-title: A study of abbreviations in MEDLINE abstracts publication-title: Proc. AMIA Symp. – reference: Bodenreider O, Burgun A, Rindflesch TC. Lexically suggested hyponymic relations among medical terms and their representation in the UMLS. In: Proceedings of the Conference on Terminology and Artificial Intelligence; 2001. p. 11–21 – start-page: 270 year: 2000 end-page: 274 ident: BIB21 article-title: A broad-coverage natural language processing system publication-title: Proc. AMIA Symp. – start-page: 25 year: 1975 end-page: 56 ident: BIB43 article-title: Givenness, contrastiveness, definiteness, subjects, topics, and point of view publication-title: Subject and topic – volume: 1 start-page: 161 year: 1994 end-page: 174 ident: BIB20 article-title: A general natural-language text processor for clinical radiology publication-title: J. Am. Med. Inform. Assoc. – start-page: 235 year: 1994 end-page: 239 ident: BIB45 article-title: Lexical methods for managing variation in biomedical terminologies publication-title: Proc. Annu. Symp. Comput. Appl. Med. Care – volume: 122 start-page: 681 issue: 9 year: 1995 ident: 10.1016/j.jbi.2003.11.003_BIB5 article-title: Unlocking clinical data from narrative reports: a study of natural language processing publication-title: Ann. Intern. Med. doi: 10.7326/0003-4819-122-9-199505010-00007 – start-page: 704 year: 2000 ident: 10.1016/j.jbi.2003.11.003_BIB13 article-title: Argument identification for arterial branching predications asserted in cardiac catheterization reports publication-title: Proc. AMIA Symp. – volume: 17 start-page: S74 issue: Suppl 1 year: 2001 ident: 10.1016/j.jbi.2003.11.003_BIB9 article-title: GENIES: a natural-language processing system for the extraction of molecular pathways from journal articles publication-title: Bioinformatics doi: 10.1093/bioinformatics/17.suppl_1.S74 – ident: 10.1016/j.jbi.2003.11.003_BIB54 – volume: 1 start-page: 161 issue: 2 year: 1994 ident: 10.1016/j.jbi.2003.11.003_BIB20 article-title: A general natural-language text processor for clinical radiology publication-title: J. Am. Med. Inform. Assoc. doi: 10.1136/jamia.1994.95236146 – volume: 1 start-page: 142 issue: 2 year: 1994 ident: 10.1016/j.jbi.2003.11.003_BIB22 article-title: Natural language processing and the representation of clinical data publication-title: J. Am. Med. Inform. Assoc. doi: 10.1136/jamia.1994.95236145 – start-page: 330 year: 2000 ident: 10.1016/j.jbi.2003.11.003_BIB36 article-title: MEDSYNDIKATE—design considerations for an ontology-based medical text understanding system publication-title: Proc. AMIA Symp. – start-page: 464 year: 2002 ident: 10.1016/j.jbi.2003.11.003_BIB56 article-title: A study of abbreviations in MEDLINE abstracts publication-title: Proc. AMIA Symp. – volume: 45 start-page: 75 issue: 1–2 year: 1994 ident: 10.1016/j.jbi.2003.11.003_BIB28 article-title: The GALEN project publication-title: Comput. Methods Programs Biomed. doi: 10.1016/0169-2607(94)90020-5 – ident: 10.1016/j.jbi.2003.11.003_BIB15 doi: 10.3115/974147.974173 – start-page: 925 year: 1999 ident: 10.1016/j.jbi.2003.11.003_BIB37 article-title: Streamlining semantic interpretation for medical narratives publication-title: Proc. AMIA Symp. – volume: 9 start-page: 262 issue: 3 year: 2002 ident: 10.1016/j.jbi.2003.11.003_BIB58 article-title: Mapping abbreviations to full forms in electronic articles publication-title: J. Am. Med. Inform. Assoc. doi: 10.1197/jamia.M0913 – start-page: 17 year: 2001 ident: 10.1016/j.jbi.2003.11.003_BIB52 article-title: Effective mapping of biomedical text to the UMLS Metathesaurus: The MetaMap program publication-title: Proc. AMIA Symp. – start-page: 517 year: 2000 ident: 10.1016/j.jbi.2003.11.003_BIB14 article-title: EDGAR: extraction of drugs, genes and relations from the biomedical literature publication-title: Pac. Symp. Biocomput. – volume: 7 start-page: 593 issue: 6 year: 2000 ident: 10.1016/j.jbi.2003.11.003_BIB6 article-title: Automatic detection of acute bacterial pneumonia from chest X-ray reports publication-title: J. Am. Med. Inform. Assoc. doi: 10.1136/jamia.2000.0070593 – volume: 35 start-page: 194 issue: 3 year: 2002 ident: 10.1016/j.jbi.2003.11.003_BIB49 article-title: The cohesive metaschema: a higher-level abstraction of the UMLS Semantic Network publication-title: J. Biomed. Inform. doi: 10.1016/S1532-0464(02)00528-2 – ident: 10.1016/j.jbi.2003.11.003_BIB41 – volume: 35 start-page: 236 issue: 4 year: 2002 ident: 10.1016/j.jbi.2003.11.003_BIB7 article-title: Information extraction for enhanced access to disease outbreak reports publication-title: J. Biomed. Inform. doi: 10.1016/S1532-0464(03)00013-3 – volume: 74 start-page: 890 issue: 8 year: 1999 ident: 10.1016/j.jbi.2003.11.003_BIB12 article-title: Natural language processing and its future in medicine publication-title: Acad. Med. doi: 10.1097/00001888-199908000-00012 – volume: 10 start-page: 216 issue: Pt 1 year: 2001 ident: 10.1016/j.jbi.2003.11.003_BIB47 article-title: Aggregating UMLS semantic types for reducing conceptual complexity publication-title: Medinfo – start-page: 590 year: 1997 ident: 10.1016/j.jbi.2003.11.003_BIB34 article-title: Evaluating a normalized conceptual representation produced from natural language patient discharge summaries publication-title: Proc. AMIA Annu. Fall Symp. – start-page: 76 year: 2000 ident: 10.1016/j.jbi.2003.11.003_BIB19 article-title: NLP techniques associated with the OpenGALEN ontology for semi-automatic textual extraction of medical knowledge: abstracting and mapping equivalent linguistic and logistic constructs publication-title: Proc. AMIA Symp. – ident: 10.1016/j.jbi.2003.11.003_BIB32 doi: 10.3115/1118149.1118154 – start-page: 270 year: 2000 ident: 10.1016/j.jbi.2003.11.003_BIB21 article-title: A broad-coverage natural language processing system publication-title: Proc. AMIA Symp. – ident: 10.1016/j.jbi.2003.11.003_BIB55 doi: 10.3115/1073083.1073124 – ident: 10.1016/j.jbi.2003.11.003_BIB51 doi: 10.3115/974499.974523 – start-page: 25 year: 1975 ident: 10.1016/j.jbi.2003.11.003_BIB43 article-title: Givenness, contrastiveness, definiteness, subjects, topics, and point of view – start-page: 77 year: 1999 ident: 10.1016/j.jbi.2003.11.003_BIB3 article-title: Constructing biological knowledge bases by extracting information from text sources publication-title: Proc. Int. Conf. Intell. Syst. Mol. Biol. – ident: 10.1016/j.jbi.2003.11.003_BIB60 doi: 10.1145/379437.379675 – volume: 33 start-page: 1 issue: 1 year: 2000 ident: 10.1016/j.jbi.2003.11.003_BIB25 article-title: Coding neuroradiology reports for the Northern Manhattan Stroke Study: a comparison of natural language processing and manual review publication-title: Comput. Biomed. Res. doi: 10.1006/cbmr.1999.1535 – volume: 6 start-page: 102 issue: 2 year: 2002 ident: 10.1016/j.jbi.2003.11.003_BIB48 article-title: Partitioning the UMLS semantic network publication-title: IEEE Trans. Inf. Technol. Biomed. doi: 10.1109/TITB.2002.1006296 – start-page: 17 year: 2000 ident: 10.1016/j.jbi.2003.11.003_BIB53 article-title: The NLM indexing initiative publication-title: Proc. AMIA Symp. – ident: 10.1016/j.jbi.2003.11.003_BIB40 doi: 10.1145/505168.505190 – volume: 67 start-page: 63 issue: 1–3 year: 2002 ident: 10.1016/j.jbi.2003.11.003_BIB8 article-title: MEDSYNDIKATE—a natural language system for the extraction of medical information from findings reports publication-title: Int. J. Med. Inf. doi: 10.1016/S1386-5056(02)00053-9 – start-page: 235 year: 1994 ident: 10.1016/j.jbi.2003.11.003_BIB45 article-title: Lexical methods for managing variation in biomedical terminologies publication-title: Proc. Annu. Symp. Comput. Appl. Med. Care – ident: 10.1016/j.jbi.2003.11.003_BIB44 – start-page: 294 year: 1993 ident: 10.1016/j.jbi.2003.11.003_BIB26 article-title: Interpreting natural language queries using the UMLS publication-title: Proc. Annu. Symp. Comput. Appl. Med. Care – volume: 1 start-page: 447 issue: 6 year: 1994 ident: 10.1016/j.jbi.2003.11.003_BIB1 article-title: Developing optimal search strategies for detecting clinically sound studies in MEDLINE publication-title: J. Am. Med. Inform. Assoc. doi: 10.1136/jamia.1994.95153434 – volume: 5 start-page: 1 issue: 1 year: 1998 ident: 10.1016/j.jbi.2003.11.003_BIB18 article-title: The unified medical language system: an informatics research collaboration publication-title: J. Am. Med. Inform. Assoc. doi: 10.1136/jamia.1998.0050001 – start-page: 939 year: 2002 ident: 10.1016/j.jbi.2003.11.003_BIB50 article-title: Enriching the Structure of the UMLS Semantic Network publication-title: Proc. AMIA Symp. – volume: 16 start-page: 30 issue: 10 year: 1983 ident: 10.1016/j.jbi.2003.11.003_BIB39 article-title: 1983. What IS-A is and isn’t: an analysis of taxonomic links in semantic networks publication-title: Computer doi: 10.1109/MC.1983.1654194 – volume: 41 start-page: 426 issue: 5 year: 2002 ident: 10.1016/j.jbi.2003.11.003_BIB57 article-title: Heuristics for identification of acronym-definition patterns within text: towards an automated construction of comprehensive acronym-definition dictionaries publication-title: Methods Inf. Med. doi: 10.1055/s-0038-1634373 – ident: 10.1016/j.jbi.2003.11.003_BIB38 doi: 10.3115/992133.992154 – start-page: 235 year: 2000 ident: 10.1016/j.jbi.2003.11.003_BIB30 article-title: Using medical language processing to support real-time evaluation of pneumonia guidelines publication-title: Proc. AMIA Symp. – ident: 10.1016/j.jbi.2003.11.003_BIB4 – start-page: 247 year: 1994 ident: 10.1016/j.jbi.2003.11.003_BIB29 article-title: A natural language understanding system combining syntactic and semantic techniques publication-title: Proc. Annu. Symp. Comput. Appl. Med. Care – start-page: 189 year: 2001 ident: 10.1016/j.jbi.2003.11.003_BIB23 article-title: Evaluating the UMLS as a source of lexical knowledge for medical language processing publication-title: Proc. AMIA Symp. – volume: 37 start-page: 315 issue: 4–5 year: 1998 ident: 10.1016/j.jbi.2003.11.003_BIB17 article-title: Alternative ways for knowledge collection, indexing and robust language retrieval publication-title: Methods Inf. Med. – start-page: 722 year: 2002 ident: 10.1016/j.jbi.2003.11.003_BIB16 article-title: Exploring text mining from MEDLINE publication-title: Proc. AMIA Symp. – volume: 53 start-page: 1 issue: 1 year: 1999 ident: 10.1016/j.jbi.2003.11.003_BIB42 article-title: Discourse structures in medical reports—watch out! The generation of referentially coherent and valid text knowledge bases in the MEDSYNDIKATE system publication-title: Int. J. Med. Inf. doi: 10.1016/S1386-5056(98)00091-4 – volume: 6 start-page: 143 issue: 2 year: 1999 ident: 10.1016/j.jbi.2003.11.003_BIB59 article-title: A reliability study for evaluating information extraction from radiology reports publication-title: J. Am. Med. Inform. Assoc. doi: 10.1136/jamia.1999.0060143 – ident: 10.1016/j.jbi.2003.11.003_BIB2 doi: 10.3115/1118149.1118159 – ident: 10.1016/j.jbi.2003.11.003_BIB10 doi: 10.3115/1073083.1073125 – volume: 29 start-page: 351 issue: 5 year: 1996 ident: 10.1016/j.jbi.2003.11.003_BIB31 article-title: Development and evaluation of a computerized admission diagnoses encoding system publication-title: Comput. Biomed. Res. doi: 10.1006/cbmr.1996.0026 – start-page: 27 year: 1995 ident: 10.1016/j.jbi.2003.11.003_BIB27 article-title: Analysis of medical texts based on a sound medical model publication-title: Proc. Annu. Symp. Comput. Appl. Med. Care – volume: 19 start-page: 94 issue: 2 year: 1998 ident: 10.1016/j.jbi.2003.11.003_BIB24 article-title: Respiratory isolation of tuberculosis patients using clinical guidelines and an automated clinical decision support system publication-title: Infect Control Hosp. Epidemiol. doi: 10.2307/30141996 – volume: 15 start-page: 25 issue: 1 year: 1999 ident: 10.1016/j.jbi.2003.11.003_BIB35 article-title: How knowledge drives understanding—matching medical ontologies with the needs of medical language processing publication-title: Artif. Intell. Med. doi: 10.1016/S0933-3657(98)00044-X – start-page: 357 year: 1995 ident: 10.1016/j.jbi.2003.11.003_BIB33 article-title: A multi-lingual architecture for building a normalised conceptual representation from medical language publication-title: Proc. Annu. Symp. Comput. Appl. Med. Care – volume: 35 start-page: 285 issue: 4–5 year: 1996 ident: 10.1016/j.jbi.2003.11.003_BIB11 article-title: Natural language processing in medicine: an overview publication-title: Methods Inf. Med. – ident: 10.1016/j.jbi.2003.11.003_BIB46 |
| SSID | ssj0011556 |
| Score | 2.2588491 |
| Snippet | Interpretation of semantic propositions in free-text documents such as MEDLINE citations would provide valuable support for biomedical applications, and... |
| SourceID | proquest pubmed crossref elsevier |
| SourceType | Aggregation Database Index Database Enrichment Source Publisher |
| StartPage | 462 |
| SubjectTerms | Abstracting and Indexing as Topic - methods Algorithms Artificial Intelligence Database Management Systems Databases, Factual Information extraction Information Storage and Retrieval - methods Knowledge representation Linguistics National Library of Medicine (U.S.) Natural Language Processing Semantic processing Semantics Subject Headings Terminology as Topic Unified Medical Language System United States |
| Title | The interaction of domain knowledge and linguistic structure in natural language processing: interpreting hypernymic propositions in biomedical text |
| URI | https://dx.doi.org/10.1016/j.jbi.2003.11.003 https://www.ncbi.nlm.nih.gov/pubmed/14759819 https://www.proquest.com/docview/17702978 https://www.proquest.com/docview/71568673 |
| Volume | 36 |
| WOSCitedRecordID | wos000189096000005&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D |
| hasFullText | 1 |
| inHoldings | 1 |
| isFullTextHit | |
| isPrint | |
| journalDatabaseRights | – providerCode: PRVESC databaseName: Elsevier SD Freedom Collection Journals 2021 customDbUrl: eissn: 1532-0480 dateEnd: 20210131 omitProxy: false ssIdentifier: ssj0011556 issn: 1532-0464 databaseCode: AIEXJ dateStart: 20010201 isFulltext: true titleUrlDefault: https://www.sciencedirect.com providerName: Elsevier |
| link | http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1Lb9NAEF6lLUIghCBAKY-yB8SByFX8XJtbhRIBSgOHVMrN2rW9qqNgu0laFf4CV34wM95d24BS4MBlFVm7G8vzeTw7j28IeWlHUeaDzrNA8QWWl8LAbZlZjnSk5yKBW1KTuE7YdBrO59GnXu-bqYW5XLKiCK-uouq_ihqugbCxdPYfxN1sChfgNwgdRhA7jH8teCSBWOku4GANpuVnnheDxn9WRwywDv2ipmkeKBJZDCXArJrqEwRnPJmDStUS6Mro3GQpoo_hDE6xq-IL5tdX2G5BJ4DhNqquv4YAJpdsMYI7szSF66abfp8XqUTCqbM2l6l1647z9Vftvz3Bis1l-ZMLw-2kgxit62COqddVy4oXRcOvq2M9pb5_0_3KDbE4Woi85nk9QnbWodt-6Exwf_oxHp9OJvFsNJ-9qs4tbEGGoXrdj2WH7DnMj0DL7x2_H80_NEEpML0CRb-r7tYEyet0wV_-dZuZs-0YU5szs3vkrhYBPVb4uU96WdEntzvslH1y80TnXfTJHeXdpapo7QH5DiCjHZDRUlIFMtqAjALIaAsy2oAMFlINMmpARluQvaFdiNEWYrQLMdykBQ9FiD0kp-PR7O07S_f3sBI3HG4sxrlMAmFnnsTsfSeQcHr34ZOTRjwVgmWpZGAO-4mdRjLK-DDyMlt6MvG5SBzhuY_IblEW2WNCHV84cJCJGNhjnssTwTkTtssxSMxcYR-QoRFHnGjye-zBsoxNluMiBgliU1YXDsXImHtAXjdLKsX8ct1kz8g41qarMkljQOd1y14YPMSg1jFWx4usvFjHNmPYVi7cPgMeVRAGDPbYV0Bq7xI5PMHSf_LHtU_JrfZ9fEZ2AQjZc3Ijudzk69Uh2WHz8FC_BT8AqNLibg |
| linkProvider | Elsevier |
| openUrl | ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=The+interaction+of+domain+knowledge+and+linguistic+structure+in+natural+language+processing%3A+interpreting+hypernymic+propositions+in+biomedical+text&rft.jtitle=Journal+of+biomedical+informatics&rft.au=Rindflesch%2C+Thomas+C&rft.au=Fiszman%2C+Marcelo&rft.date=2003-12-01&rft.issn=1532-0464&rft.volume=36&rft.issue=6&rft.spage=462&rft_id=info:doi/10.1016%2Fj.jbi.2003.11.003&rft.externalDBID=NO_FULL_TEXT |
| thumbnail_l | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1532-0464&client=summon |
| thumbnail_m | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1532-0464&client=summon |
| thumbnail_s | http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1532-0464&client=summon |