Comparative Functional Genomics and the Bovine Macrophage Response to Strains of the Mycobacterium Genus

Mycobacterial infections are major causes of morbidity and mortality in cattle and are also potential zoonotic agents with implications for human health. Despite the implementation of comprehensive animal surveillance programs, many mycobacterial diseases have remained recalcitrant to eradication in...

Full description

Saved in:
Bibliographic Details
Published in:Frontiers in immunology Vol. 5; p. 536
Main Authors: Rue-Albrecht, Kévin, Magee, David A., Killick, Kate E., Nalpas, Nicolas C., Gordon, Stephen V., MacHugh, David E.
Format: Journal Article
Language:English
Published: Switzerland Frontiers Media S.A 2014
Subjects:
ISSN:1664-3224, 1664-3224
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
Abstract Mycobacterial infections are major causes of morbidity and mortality in cattle and are also potential zoonotic agents with implications for human health. Despite the implementation of comprehensive animal surveillance programs, many mycobacterial diseases have remained recalcitrant to eradication in several industrialized countries. Two major mycobacterial pathogens of cattle are Mycobacterium bovis and Mycobacterium avium subspecies paratuberculosis (MAP), the causative agents of bovine tuberculosis (BTB) and Johne's disease (JD), respectively. BTB is a chronic, granulomatous disease of the respiratory tract that is spread via aerosol transmission, while JD is a chronic granulomatous disease of the intestines that is transmitted via the fecal-oral route. Although these diseases exhibit differential tissue tropism and distinct complex etiologies, both M. bovis and MAP infect, reside, and replicate in host macrophages - the key host innate immune cell that encounters mycobacterial pathogens after initial exposure and mediates the subsequent immune response. The persistence of M. bovis and MAP in macrophages relies on a diverse series of immunomodulatory mechanisms, including the inhibition of phagosome maturation and apoptosis, generation of cytokine-induced necrosis enabling dissemination of infection through the host, local pathology, and ultimately shedding of the pathogen. Here, we review the bovine macrophage response to infection with M. bovis and MAP. In particular, we describe how recent advances in functional genomics are shedding light on the host macrophage-pathogen interactions that underlie different mycobacterial diseases. To illustrate this, we present new analyses of previously published bovine macrophage transcriptomics data following in vitro infection with virulent M. bovis, the attenuated vaccine strain M. bovis BCG, and MAP, and discuss our findings with respect to the differing etiologies of BTB and JD.
AbstractList Mycobacterial infections are major causes of morbidity and mortality in cattle and are also potential zoonotic agents with implications for human health. Despite the implementation of comprehensive animal surveillance programs, many mycobacterial diseases have remained recalcitrant to eradication in several industrialized countries. Two major mycobacterial pathogens of cattle are Mycobacterium bovis and M. avium subspecies paratuberculosis (MAP), the causative agents of bovine tuberculosis and Johne’s disease, respectively. Bovine tuberculosis is a chronic, granulomatous disease of the respiratory tract that is spread via aerosol transmission, while Johne’s disease is a chronic granulomatous disease of the intestines that is transmitted via the fecal-oral route. Although these diseases exhibit differential tissue tropism and distinct complex etiologies, both M. bovis and MAP infect, reside and replicate in host macrophages—the key host innate immune cell that encounters mycobacterial pathogens after initial exposure and mediates the subsequent immune response. The persistence of M. bovis and MAP in macrophages relies on a diverse series of immunomodulatory mechanisms, including the inhibition of phagosome maturation and apoptosis, generation of cytokine-induced necrosis enabling dissemination of infection through the host, local pathology, and ultimately shedding of the pathogen. Here, we review the bovine macrophage response to infection with M. bovis and MAP. In particular, we describe how recent advances in functional genomics are shedding light on the host macrophage-pathogen interactions that underlie different mycobacterial diseases. To illustrate this, we present new analyses of previously published bovine macrophage transcriptomics data following in vitro infection with virulent M. bovis, the attenuated vaccine strain M. bovis BCG, and MAP, and discuss our findings with respect to the differing etiologies of bovine tuberculosis and Johne’s disease.
Mycobacterial infections are major causes of morbidity and mortality in cattle and are also potential zoonotic agents with implications for human health. Despite the implementation of comprehensive animal surveillance programs, many mycobacterial diseases have remained recalcitrant to eradication in several industrialized countries. Two major mycobacterial pathogens of cattle are Mycobacterium bovis and Mycobacterium avium subspecies paratuberculosis (MAP), the causative agents of bovine tuberculosis (BTB) and Johne's disease (JD), respectively. BTB is a chronic, granulomatous disease of the respiratory tract that is spread via aerosol transmission, while JD is a chronic granulomatous disease of the intestines that is transmitted via the fecal-oral route. Although these diseases exhibit differential tissue tropism and distinct complex etiologies, both M. bovis and MAP infect, reside, and replicate in host macrophages - the key host innate immune cell that encounters mycobacterial pathogens after initial exposure and mediates the subsequent immune response. The persistence of M. bovis and MAP in macrophages relies on a diverse series of immunomodulatory mechanisms, including the inhibition of phagosome maturation and apoptosis, generation of cytokine-induced necrosis enabling dissemination of infection through the host, local pathology, and ultimately shedding of the pathogen. Here, we review the bovine macrophage response to infection with M. bovis and MAP. In particular, we describe how recent advances in functional genomics are shedding light on the host macrophage-pathogen interactions that underlie different mycobacterial diseases. To illustrate this, we present new analyses of previously published bovine macrophage transcriptomics data following in vitro infection with virulent M. bovis, the attenuated vaccine strain M. bovis BCG, and MAP, and discuss our findings with respect to the differing etiologies of BTB and JD.
Mycobacterial infections are major causes of morbidity and mortality in cattle and are also potential zoonotic agents with implications for human health. Despite the implementation of comprehensive animal surveillance programs, many mycobacterial diseases have remained recalcitrant to eradication in several industrialized countries. Two major mycobacterial pathogens of cattle are Mycobacterium bovis and Mycobacterium avium subspecies paratuberculosis (MAP), the causative agents of bovine tuberculosis (BTB) and Johne's disease (JD), respectively. BTB is a chronic, granulomatous disease of the respiratory tract that is spread via aerosol transmission, while JD is a chronic granulomatous disease of the intestines that is transmitted via the fecal-oral route. Although these diseases exhibit differential tissue tropism and distinct complex etiologies, both M. bovis and MAP infect, reside, and replicate in host macrophages - the key host innate immune cell that encounters mycobacterial pathogens after initial exposure and mediates the subsequent immune response. The persistence of M. bovis and MAP in macrophages relies on a diverse series of immunomodulatory mechanisms, including the inhibition of phagosome maturation and apoptosis, generation of cytokine-induced necrosis enabling dissemination of infection through the host, local pathology, and ultimately shedding of the pathogen. Here, we review the bovine macrophage response to infection with M. bovis and MAP. In particular, we describe how recent advances in functional genomics are shedding light on the host macrophage-pathogen interactions that underlie different mycobacterial diseases. To illustrate this, we present new analyses of previously published bovine macrophage transcriptomics data following in vitro infection with virulent M. bovis, the attenuated vaccine strain M. bovis BCG, and MAP, and discuss our findings with respect to the differing etiologies of BTB and JD.Mycobacterial infections are major causes of morbidity and mortality in cattle and are also potential zoonotic agents with implications for human health. Despite the implementation of comprehensive animal surveillance programs, many mycobacterial diseases have remained recalcitrant to eradication in several industrialized countries. Two major mycobacterial pathogens of cattle are Mycobacterium bovis and Mycobacterium avium subspecies paratuberculosis (MAP), the causative agents of bovine tuberculosis (BTB) and Johne's disease (JD), respectively. BTB is a chronic, granulomatous disease of the respiratory tract that is spread via aerosol transmission, while JD is a chronic granulomatous disease of the intestines that is transmitted via the fecal-oral route. Although these diseases exhibit differential tissue tropism and distinct complex etiologies, both M. bovis and MAP infect, reside, and replicate in host macrophages - the key host innate immune cell that encounters mycobacterial pathogens after initial exposure and mediates the subsequent immune response. The persistence of M. bovis and MAP in macrophages relies on a diverse series of immunomodulatory mechanisms, including the inhibition of phagosome maturation and apoptosis, generation of cytokine-induced necrosis enabling dissemination of infection through the host, local pathology, and ultimately shedding of the pathogen. Here, we review the bovine macrophage response to infection with M. bovis and MAP. In particular, we describe how recent advances in functional genomics are shedding light on the host macrophage-pathogen interactions that underlie different mycobacterial diseases. To illustrate this, we present new analyses of previously published bovine macrophage transcriptomics data following in vitro infection with virulent M. bovis, the attenuated vaccine strain M. bovis BCG, and MAP, and discuss our findings with respect to the differing etiologies of BTB and JD.
Author MacHugh, David E.
Gordon, Stephen V.
Magee, David A.
Rue-Albrecht, Kévin
Nalpas, Nicolas C.
Killick, Kate E.
AuthorAffiliation 1 Animal Genomics Laboratory, UCD School of Agriculture and Food Science, University College Dublin , Dublin , Ireland
4 UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin , Dublin , Ireland
3 UCD School of Veterinary Medicine, University College Dublin , Dublin , Ireland
2 Systems Biology Ireland, UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin , Dublin , Ireland
AuthorAffiliation_xml – name: 4 UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin , Dublin , Ireland
– name: 1 Animal Genomics Laboratory, UCD School of Agriculture and Food Science, University College Dublin , Dublin , Ireland
– name: 3 UCD School of Veterinary Medicine, University College Dublin , Dublin , Ireland
– name: 2 Systems Biology Ireland, UCD Conway Institute of Biomolecular and Biomedical Research, University College Dublin , Dublin , Ireland
Author_xml – sequence: 1
  givenname: Kévin
  surname: Rue-Albrecht
  fullname: Rue-Albrecht, Kévin
– sequence: 2
  givenname: David A.
  surname: Magee
  fullname: Magee, David A.
– sequence: 3
  givenname: Kate E.
  surname: Killick
  fullname: Killick, Kate E.
– sequence: 4
  givenname: Nicolas C.
  surname: Nalpas
  fullname: Nalpas, Nicolas C.
– sequence: 5
  givenname: Stephen V.
  surname: Gordon
  fullname: Gordon, Stephen V.
– sequence: 6
  givenname: David E.
  surname: MacHugh
  fullname: MacHugh, David E.
BackLink https://www.ncbi.nlm.nih.gov/pubmed/25414700$$D View this record in MEDLINE/PubMed
BookMark eNp1kktv3CAUhVGVqknT7LuqWHYz08vDxt5UakdNGilRpT7W6BrjGSIbXLBHyr8vnkmqpFLZgODc7wD3vCYnPnhLyFsGayGq-kPnhmFec2ByDVCI8gU5Y2UpV4JzefJkfUouUrqDPGQthChekVNeSCYVwBnZbcIwYsTJ7S29nL2ZXPDY0yvrw-BMouhbOu0s_Rz2zlt6iyaGcYdbS7_bNAafLJ0C_TFFdD7R0B3Et_cmNGgmG908LKw5vSEvO-yTvXiYz8mvyy8_N19XN9-urjefblZGKFWuisJIsEJVDYLkdStELaoWq3xhQGZMw1DJCqumriQYrlpooWvqrjMC6haNOCfXR24b8E6P0Q0Y73VApw8bIW41xsmZ3mqFjCvAVomOScCybnj2apBJzBYGMuvjkTXOzWBbY31-Zv8M-vzEu53ehr2WnINiLAPePwBi-D3bNOnBJWP7Hr0Nc9KsFKooGLDF691Tr78mj63KgvIoyA1IKdpOGzfh0q7l73vNQC-x0IdY6CUW-hCLXAj_FD6y_1vyB8WjvHk
CitedBy_id crossref_primary_10_3389_fmicb_2017_02389
crossref_primary_10_1128_jb_00256_24
crossref_primary_10_3389_fimmu_2015_00071
crossref_primary_10_1099_mgen_0_000163
crossref_primary_10_1186_s12859_016_0971_3
crossref_primary_10_1186_s12864_021_07487_4
crossref_primary_10_1016_j_cimid_2021_101615
crossref_primary_10_1371_journal_pntd_0012882
crossref_primary_10_2478_jvetres_2023_0007
crossref_primary_10_3389_fgene_2016_00030
crossref_primary_10_3389_fimmu_2015_00023
crossref_primary_10_3389_fimmu_2019_02874
crossref_primary_10_1038_icb_2016_114
crossref_primary_10_1016_j_meegid_2017_04_018
crossref_primary_10_1371_journal_pone_0153932
crossref_primary_10_1038_s41598_019_57089_0
crossref_primary_10_1016_j_tvjl_2017_02_007
crossref_primary_10_1186_s12866_016_0816_2
crossref_primary_10_1111_1462_2920_13810
Cites_doi 10.4049/jimmunol.0904005
10.1086/341068
10.4161/viru.22329
10.1155/2011/768542
10.3168/jds.S0022-0302(98)75577-8
10.4049/jimmunol.1100926
10.1165/rcmb.2010-0319OC
10.1111/cmi.12161
10.1079/AHRR200134
10.4049/jimmunol.179.2.1178
10.1093/bfgp/elq009
10.1073/pnas.091096998
10.1128/IAI.71.11.6487-6498.2003
10.1038/mi.2011.13
10.1038/nmeth0907-679
10.1152/physiolgenomics.00098.2006
10.1093/nar/gkn409
10.1186/1297-9716-43-25
10.1038/ncomms4600
10.1038/ng.2517
10.1016/S0378-1135(00)00331-X
10.1073/pnas.052548299
10.1016/j.dci.2011.01.001
10.1111/j.1574-695X.2006.00123.x
10.4049/jimmunol.179.1.522
10.1146/annurev.micro.58.030603.123726
10.1016/j.meegid.2013.12.007
10.1016/j.autrev.2005.04.011
10.2217/fmb.10.53
10.1128/JB.01691-07
10.1046/j.1365-2958.2002.03237.x
10.1016/S0966-842X(01)02131-X
10.1146/annurev.immunol.021908.132703
10.4049/jimmunol.0904189
10.3168/jds.2009-2133
10.1038/nrmicro1126
10.1371/journal.pone.0004228
10.1007/s00018-007-7012-3
10.1016/j.tvjl.2007.08.023
10.1016/0962-8479(95)90591-X
10.1038/nri2960
10.1016/j.vetmic.2005.11.031
10.1128/IAI.00406-12
10.1128/JB.00142-12
10.1155/2013/458278
10.3389/fmicb.2012.00215
10.1016/j.intimp.2006.01.003
10.1016/j.micpath.2004.07.001
10.1093/bioinformatics/btl033
10.1016/j.cimid.2012.01.004
10.1016/j.vetimm.2007.01.005
10.1371/journal.pone.0020302
10.1086/507427
10.1038/nature09247
10.4049/jimmunol.176.6.3707
10.1038/nri3211
10.1371/journal.ppat.1002378
10.1093/nar/gks1193
10.1016/j.micinf.2010.10.009
10.1128/IAI.71.11.6479-6486.2003
10.1016/j.immuni.2011.02.006
10.1074/jbc.M310969200
10.1128/IAI.00575-13
10.1165/rcmb.2008-0219OC
10.1007/s00251-006-0173-7
10.1079/9781845936136.0109
10.1146/annurev-immunol-032712-095939
10.1128/IAI.72.6.3089-3096.2004
10.1038/nrmicro2165
10.1016/j.vetimm.2014.02.009
10.1128/IAI.70.10.5556-5561.2002
10.1099/mic.0.2008/020164-0
10.3389/fimmu.2014.00422
10.1073/pnas.1318628111
10.1053/tvjl.2001.0655
10.1016/j.vetimm.2008.10.294
10.1099/00207713-47-4-1236
10.1038/ni1008-1101
10.1128/JB.188.2.711-723.2006
10.1093/bioinformatics/btn647
10.1186/1471-2164-14-230
10.1038/nrmicro2321
10.5402/2012/872710
10.1111/j.1462-5822.2009.01335.x
10.1371/journal.pone.0032034
10.1016/j.prevetmed.2008.07.003
10.1111/j.1865-1682.2010.01148.x
10.1084/jem.142.1.1
10.1146/annurev-pathol-011811-132458
10.1038/mi.2011.3
10.1038/nature12799
10.1128/JCM.01313-08
10.1016/S0167-5877(99)00037-9
10.1371/journal.ppat.1003479
10.1016/j.cvfa.2011.07.001
10.1038/ni1468
10.1371/journal.ppat.1000234
10.1038/nri2634
10.1371/journal.ppat.1001307
10.1016/j.cellsig.2012.05.014
10.1038/nrmicro1472
10.1186/2042-5783-2-7
ContentType Journal Article
Copyright Copyright © 2014 Rue-Albrecht, Magee, Killick, Nalpas, Gordon and MacHugh. 2014
Copyright_xml – notice: Copyright © 2014 Rue-Albrecht, Magee, Killick, Nalpas, Gordon and MacHugh. 2014
DBID AAYXX
CITATION
NPM
7X8
5PM
DOA
DOI 10.3389/fimmu.2014.00536
DatabaseName CrossRef
PubMed
MEDLINE - Academic
PubMed Central (Full Participant titles)
DOAJ Open Access Full Text
DatabaseTitle CrossRef
PubMed
MEDLINE - Academic
DatabaseTitleList
PubMed
MEDLINE - Academic

Database_xml – sequence: 1
  dbid: DOA
  name: DOAJ Directory of Open Access Journals
  url: https://www.doaj.org/
  sourceTypes: Open Website
– sequence: 2
  dbid: NPM
  name: PubMed
  url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 3
  dbid: 7X8
  name: MEDLINE - Academic
  url: https://search.proquest.com/medline
  sourceTypes: Aggregation Database
DeliveryMethod fulltext_linktorsrc
Discipline Biology
EISSN 1664-3224
ExternalDocumentID oai_doaj_org_article_7a1270ad73f140a69b238dba14a48ac0
PMC4220711
25414700
10_3389_fimmu_2014_00536
Genre Journal Article
Review
GrantInformation_xml – fundername: Wellcome Trust
GroupedDBID 53G
5VS
9T4
AAFWJ
AAKDD
AAYXX
ACGFO
ACGFS
ADBBV
ADRAZ
AENEX
AFPKN
ALMA_UNASSIGNED_HOLDINGS
AOIJS
BAWUL
BCNDV
CITATION
DIK
EBS
EMOBN
GROUPED_DOAJ
GX1
HYE
IPNFZ
KQ8
M48
M~E
OK1
PGMZT
RIG
RNS
RPM
ACXDI
NPM
7X8
5PM
ID FETCH-LOGICAL-c3776-55c40e378ba0429d33938da85410a1ccb1a748a8b9840c27d0d0fb9ffc309dac3
IEDL.DBID DOA
ISSN 1664-3224
IngestDate Fri Oct 03 12:42:59 EDT 2025
Tue Sep 30 16:57:35 EDT 2025
Thu Sep 04 20:21:11 EDT 2025
Wed Mar 19 02:20:55 EDT 2025
Tue Nov 18 22:02:32 EST 2025
Sat Nov 29 03:12:24 EST 2025
IsDoiOpenAccess true
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Keywords Mycobacterium avium subspecies paratuberculosis
Johne’s disease
Mycobacterium bovis
BCG
tuberculosis
macrophage
cattle
gene expression
Language English
License This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c3776-55c40e378ba0429d33938da85410a1ccb1a748a8b9840c27d0d0fb9ffc309dac3
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
ObjectType-Review-3
content type line 23
Edited by: Kieran G. Meade, Teagasc, Ireland
This article was submitted to Molecular Innate Immunity, a section of the journal Frontiers in Immunology.
Present address: David A. Magee, Department of Animal Science, University of Connecticut, Storrs, CT, USA
Reviewed by: Paul M. Coussens, Michigan State University, USA; Annapurna Nayak, Brunel University, UK
OpenAccessLink https://doaj.org/article/7a1270ad73f140a69b238dba14a48ac0
PMID 25414700
PQID 1637551010
PQPubID 23479
ParticipantIDs doaj_primary_oai_doaj_org_article_7a1270ad73f140a69b238dba14a48ac0
pubmedcentral_primary_oai_pubmedcentral_nih_gov_4220711
proquest_miscellaneous_1637551010
pubmed_primary_25414700
crossref_citationtrail_10_3389_fimmu_2014_00536
crossref_primary_10_3389_fimmu_2014_00536
PublicationCentury 2000
PublicationDate 2014-00-00
PublicationDateYYYYMMDD 2014-01-01
PublicationDate_xml – year: 2014
  text: 2014-00-00
PublicationDecade 2010
PublicationPlace Switzerland
PublicationPlace_xml – name: Switzerland
PublicationTitle Frontiers in immunology
PublicationTitleAlternate Front Immunol
PublicationYear 2014
Publisher Frontiers Media S.A
Publisher_xml – name: Frontiers Media S.A
References Cassidy (B30) 2006; 112
Sommer (B89) 2009; 128
Bannantine (B34) 2013; 81
Zhang (B78) 2007; 64
MacHugh (B61) 2012; 43
Zinsstag (B29) 2008
O’Leary (B47) 2011; 45
Coussens (B85) 2010
Forrellad (B84) 2013; 4
Barribeau (B75) 2014; 111
Ordway (B94) 2007; 179
Nalpas (B64) 2013; 14
Rindi (B22) 2014; 21
Aho (B97) 2003; 71
Hunt (B101) 2012; 194
Magee (B62) 2012; 7
Kauffmann (B67) 2009; 25
Coussens (B87) 2004; 72
Fremond (B91) 2007; 179
Stabel (B86) 2000; 77
Ramakrishnan (B79) 2012; 12
O’Garra (B32) 2013; 31
Brosch (B15) 2001; 9
Manca (B93) 2001; 98
Mostowy (B16) 2002; 186
Jenner (B53) 2005; 3
Chacon (B24) 2004; 58
Schiller (B27) 2010; 57
Waters (B52) 2011; 2011
Killick (B65) 2014; 5
Behl (B70) 2012; 2012
Cambier (B51) 2014; 505
Wu (B18) 2006; 188
Steele (B26) 1995
Welin (B81) 2011; 6
Chen (B9) 2006; 176
Yu (B104) 2012; 24
Smith (B12) 2006; 4
Walzl (B45) 2011; 11
Cooper (B44) 2011; 4
Bezuidenhout (B80) 2009; 4
Brosch (B10) 2002; 99
Walter (B73) 2007; 4
Kabara (B58) 2010; 9
Pollock (B31) 2002; 163
Benovoy (B74) 2008; 36
Widdison (B59) 2011; 35
Palmisano (B72) 2005; 4
O’Reilly (B25) 1995; 76
Kabara (B60) 2012; 3
Cooper (B43) 2009; 27
Falkinham (B23) 2010; 5
Harding (B49) 2010; 8
Wedlock (B57) 2006; 6
Simmons (B50) 2010; 185
Medzhitov (B54) 2009; 9
Portevin (B83) 2011; 7
Bergey (B1) 1984
Guarda (B95) 2011; 34
Porcelli (B48) 2008; 9
Kumar (B8) 2011; 13
Killick (B41) 2013; 15
Goletti (B42) 2006; 194
Hochreiter (B68) 2006; 22
Granados (B71) 2014; 5
Behar (B7) 2011; 4
Weiss (B76) 2002; 70
Chatterjee (B103) 2011; 7
Berry (B106) 2010; 466
Turenne (B20) 2008; 190
Chiang (B98) 2007; 116
van Soolingen (B11) 1997; 47
Murphy (B56) 2006; 28
Philips (B5) 2012; 7
Pym (B100) 2002; 46
Perry (B28) 2002
Caimi (B63) 2013; 2013
Novikov (B96) 2011; 187
Raizman (B37) 2009; 92
Ehrt (B6) 2009; 11
Waters (B4) 2014; 159
Stabel (B35) 1998; 81
Coussens (B77) 2003; 71
Ben Salah (B19) 2008; 154
Nielsen (B39) 2009; 88
Sweeney (B36) 2011; 27
Silver (B82) 2009; 40
Weiss (B55) 2004; 37
Arsenault (B90) 2012; 80
Armstrong (B46) 1975; 142
Ott (B38) 1999; 40
Barrett (B66) 2013; 41
Smith (B13) 2009; 7
Perkins (B105) 2013; 9
Mackenzie (B21) 2009; 47
Tortoli (B2) 2006; 48
Coussens (B88) 2012; 35
Mayer-Barber (B92) 2010; 184
Babiuk (B69) 2007; 59
Coussens (B3) 2001; 2
Fotin-Mleczek (B99) 2004; 279
Pierce (B40) 2009; 5
Pathak (B102) 2007; 8
Zakham (B17) 2012; 2
Whittington (B33) 2009; 179
Supply (B14) 2013; 45
References_xml – volume: 185
  start-page: 2405
  year: 2010
  ident: B50
  article-title: Mycobacterium tuberculosis and TLR2 agonists inhibit induction of type I IFN and class I MHC antigen cross processing by TLR9
  publication-title: J Immunol
  doi: 10.4049/jimmunol.0904005
– volume: 186
  start-page: 74
  year: 2002
  ident: B16
  article-title: Genomic deletions suggest a phylogeny for the Mycobacterium tuberculosis complex
  publication-title: J Infect Dis
  doi: 10.1086/341068
– volume: 4
  start-page: 3
  year: 2013
  ident: B84
  article-title: Virulence factors of the Mycobacterium tuberculosis complex
  publication-title: Virulence
  doi: 10.4161/viru.22329
– volume: 2011
  start-page: 768542
  year: 2011
  ident: B52
  article-title: Tuberculosis immunity: opportunities from studies with cattle
  publication-title: Clin Dev Immunol
  doi: 10.1155/2011/768542
– volume: 81
  start-page: 283
  year: 1998
  ident: B35
  article-title: Johne’s disease: a hidden threat
  publication-title: J Dairy Sci
  doi: 10.3168/jds.S0022-0302(98)75577-8
– volume: 187
  start-page: 2540
  year: 2011
  ident: B96
  article-title: Mycobacterium tuberculosis triggers host type I IFN signaling to regulate IL-1beta production in human macrophages
  publication-title: J Immunol
  doi: 10.4049/jimmunol.1100926
– volume: 45
  start-page: 172
  year: 2011
  ident: B47
  article-title: IL-10 blocks phagosome maturation in Mycobacterium tuberculosis-infected human macrophages
  publication-title: Am J Respir Cell Mol Biol
  doi: 10.1165/rcmb.2010-0319OC
– volume: 15
  start-page: 1484
  year: 2013
  ident: B41
  article-title: Receptor-mediated recognition of mycobacterial pathogens
  publication-title: Cell Microbiol
  doi: 10.1111/cmi.12161
– volume: 2
  start-page: 141
  year: 2001
  ident: B3
  article-title: Mycobacterium paratuberculosis and the bovine immune system
  publication-title: Anim Health Res Rev
  doi: 10.1079/AHRR200134
– volume: 179
  start-page: 1178
  year: 2007
  ident: B91
  article-title: IL-1 receptor-mediated signal is an essential component of MyD88-dependent innate response to Mycobacterium tuberculosis infection
  publication-title: J Immunol
  doi: 10.4049/jimmunol.179.2.1178
– volume: 9
  start-page: 220
  year: 2010
  ident: B58
  article-title: A large-scale study of differential gene expression in monocyte-derived macrophages infected with several strains of Mycobacterium avium subspecies paratuberculosis
  publication-title: Brief Funct Genomics
  doi: 10.1093/bfgp/elq009
– volume: 98
  start-page: 5752
  year: 2001
  ident: B93
  article-title: Virulence of a Mycobacterium tuberculosis clinical isolate in mice is determined by failure to induce Th1 type immunity and is associated with induction of IFN-alpha/beta
  publication-title: Proc Natl Acad Sci U S A
  doi: 10.1073/pnas.091096998
– volume: 71
  start-page: 6487
  year: 2003
  ident: B77
  article-title: Evidence for a novel gene expression program in peripheral blood mononuclear cells from Mycobacterium avium subsp paratuberculosis-infected cattle
  publication-title: Infect Immun
  doi: 10.1128/IAI.71.11.6487-6498.2003
– volume: 4
  start-page: 252
  year: 2011
  ident: B44
  article-title: Role of innate cytokines in mycobacterial infection
  publication-title: Mucosal Immunol
  doi: 10.1038/mi.2011.13
– volume: 4
  start-page: 679
  year: 2007
  ident: B73
  article-title: SNPs matter: impact on detection of differential expression
  publication-title: Nat Methods
  doi: 10.1038/nmeth0907-679
– volume: 28
  start-page: 67
  year: 2006
  ident: B56
  article-title: Gene expression profiling of monocyte-derived macrophages following infection with Mycobacterium avium subspecies avium and Mycobacterium avium subspecies paratuberculosis
  publication-title: Physiol Genomics
  doi: 10.1152/physiolgenomics.00098.2006
– volume: 36
  start-page: 4417
  year: 2008
  ident: B74
  article-title: Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkn409
– volume: 43
  start-page: 25
  year: 2012
  ident: B61
  article-title: Pan-genomic analysis of bovine monocyte-derived macrophage gene expression in response to in vitro infection with Mycobacterium avium subspecies paratuberculosis
  publication-title: Vet Res
  doi: 10.1186/1297-9716-43-25
– volume: 5
  start-page: 3600
  year: 2014
  ident: B71
  article-title: Impact of genomic polymorphisms on the repertoire of human MHC class I-associated peptides
  publication-title: Nat Commun
  doi: 10.1038/ncomms4600
– volume: 45
  start-page: 172
  year: 2013
  ident: B14
  article-title: Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis
  publication-title: Nat Genet
  doi: 10.1038/ng.2517
– volume: 77
  start-page: 465
  year: 2000
  ident: B86
  article-title: Transitions in immune responses to Mycobacterium paratuberculosis
  publication-title: Vet Microbiol
  doi: 10.1016/S0378-1135(00)00331-X
– volume: 99
  start-page: 3684
  year: 2002
  ident: B10
  article-title: A new evolutionary scenario for the Mycobacterium tuberculosis complex
  publication-title: Proc Natl Acad Sci U S A
  doi: 10.1073/pnas.052548299
– volume: 35
  start-page: 580
  year: 2011
  ident: B59
  article-title: Early response of bovine alveolar macrophages to infection with live and heat-killed Mycobacterium bovis
  publication-title: Dev Comp Immunol
  doi: 10.1016/j.dci.2011.01.001
– volume: 48
  start-page: 159
  year: 2006
  ident: B2
  article-title: The new mycobacteria: an update
  publication-title: FEMS Immunol Med Microbiol
  doi: 10.1111/j.1574-695X.2006.00123.x
– volume: 179
  start-page: 522
  year: 2007
  ident: B94
  article-title: The hypervirulent Mycobacterium tuberculosis strain HN878 induces a potent TH1 response followed by rapid down-regulation
  publication-title: J Immunol
  doi: 10.4049/jimmunol.179.1.522
– volume: 58
  start-page: 329
  year: 2004
  ident: B24
  article-title: Johne’s disease, inflammatory bowel disease, and Mycobacterium paratuberculosis
  publication-title: Annu Rev Microbiol
  doi: 10.1146/annurev.micro.58.030603.123726
– volume: 21
  start-page: 375
  year: 2014
  ident: B22
  article-title: Genetic diversity and phylogeny of Mycobacterium avium
  publication-title: Infect Genet Evol
  doi: 10.1016/j.meegid.2013.12.007
– volume: 4
  start-page: 510
  year: 2005
  ident: B72
  article-title: Single nucleotide polymorphisms detection based on DNA microarray technology: HLA as a model
  publication-title: Autoimmun Rev
  doi: 10.1016/j.autrev.2005.04.011
– volume: 5
  start-page: 951
  year: 2010
  ident: B23
  article-title: Impact of human activities on the ecology of non- tuberculous mycobacteria
  publication-title: Future Microbiol
  doi: 10.2217/fmb.10.53
– volume: 190
  start-page: 2479
  year: 2008
  ident: B20
  article-title: Mycobacterium avium subsp. paratuberculosis and M. avium subsp. avium are independently evolved pathogenic clones of a much broader group of M. avium organisms
  publication-title: J Bacteriol
  doi: 10.1128/JB.01691-07
– volume: 46
  start-page: 709
  year: 2002
  ident: B100
  article-title: Loss of RD1 contributed to the attenuation of the live tuberculosis vaccines Mycobacterium bovis BCG and Mycobacterium microti
  publication-title: Mol Microbiol
  doi: 10.1046/j.1365-2958.2002.03237.x
– volume: 9
  start-page: 452
  year: 2001
  ident: B15
  article-title: The evolution of mycobacterial pathogenicity: clues from comparative genomics
  publication-title: Trends Microbiol
  doi: 10.1016/S0966-842X(01)02131-X
– volume: 27
  start-page: 393
  year: 2009
  ident: B43
  article-title: Cell-mediated immune responses in tuberculosis
  publication-title: Annu Rev Immunol
  doi: 10.1146/annurev.immunol.021908.132703
– volume: 184
  start-page: 3326
  year: 2010
  ident: B92
  article-title: Caspase-1 independent IL-1beta production is critical for host resistance to Mycobacterium tuberculosis and does not require TLR signaling in vivo
  publication-title: J Immunol
  doi: 10.4049/jimmunol.0904189
– volume: 92
  start-page: 4929
  year: 2009
  ident: B37
  article-title: Loss of income from cows shedding Mycobacterium avium subspecies paratuberculosis prior to calving compared with cows not shedding the organism on two Minnesota dairy farms
  publication-title: J Dairy Sci
  doi: 10.3168/jds.2009-2133
– volume: 3
  start-page: 281
  year: 2005
  ident: B53
  article-title: Insights into host responses against pathogens from transcriptional profiling
  publication-title: Nat Rev Microbiol
  doi: 10.1038/nrmicro1126
– volume: 4
  start-page: e4228
  year: 2009
  ident: B80
  article-title: Pleural tuberculosis in patients with early HIV infection is associated with increased TNF-alpha expression and necrosis in granulomas
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0004228
– volume: 64
  start-page: 2771
  year: 2007
  ident: B78
  article-title: Regulatory mechanisms of mitogen-activated kinase signaling
  publication-title: Cell Mol Life Sci
  doi: 10.1007/s00018-007-7012-3
– volume: 179
  start-page: 60
  year: 2009
  ident: B33
  article-title: In utero infection of cattle with Mycobacterium avium subsp. paratuberculosis: a critical review and meta-analysis
  publication-title: Vet J
  doi: 10.1016/j.tvjl.2007.08.023
– volume: 76
  start-page: 1
  issue: Suppl 1
  year: 1995
  ident: B25
  article-title: The epidemiology of Mycobacterium bovis infections in animals and man: a review
  publication-title: Tuber Lung Dis
  doi: 10.1016/0962-8479(95)90591-X
– volume: 11
  start-page: 343
  year: 2011
  ident: B45
  article-title: Immunological biomarkers of tuberculosis
  publication-title: Nat Rev Immunol
  doi: 10.1038/nri2960
– volume: 112
  start-page: 151
  year: 2006
  ident: B30
  article-title: The pathogenesis and pathology of bovine tuberculosis with insights from studies of tuberculosis in humans and laboratory animal models
  publication-title: Vet Microbiol
  doi: 10.1016/j.vetmic.2005.11.031
– volume: 80
  start-page: 3039
  year: 2012
  ident: B90
  article-title: Mycobacterium avium subsp. paratuberculosis inhibits gamma interferon-induced signaling in bovine monocytes: insights into the cellular mechanisms of Johne’s disease
  publication-title: Infect Immun
  doi: 10.1128/IAI.00406-12
– volume: 194
  start-page: 2307
  year: 2012
  ident: B101
  article-title: Long-range transcriptional control of an operon necessary for virulence-critical ESX-1 secretion in Mycobacterium tuberculosis
  publication-title: J Bacteriol
  doi: 10.1128/JB.00142-12
– volume: 2013
  start-page: 458278
  year: 2013
  ident: B63
  article-title: Transcriptional response of bovine monocyte-derived macrophages after the infection with different argentinean Mycobacterium bovis isolates
  publication-title: Biomed Res Int
  doi: 10.1155/2013/458278
– volume: 3
  start-page: 215
  year: 2012
  ident: B60
  article-title: Infection of primary bovine macrophages with Mycobacterium avium subspecies paratuberculosis suppresses host cell apoptosis
  publication-title: Front Microbiol
  doi: 10.3389/fmicb.2012.00215
– volume: 6
  start-page: 957
  year: 2006
  ident: B57
  article-title: Differences of gene expression in bovine alveolar macrophages infected with virulent and attenuated isogenic strains of Mycobacterium bovis
  publication-title: Int Immunopharmacol
  doi: 10.1016/j.intimp.2006.01.003
– volume: 37
  start-page: 215
  year: 2004
  ident: B55
  article-title: Sequential patterns of gene expression by bovine monocyte-derived macrophages associated with ingestion of mycobacterial organisms
  publication-title: Microb Pathog
  doi: 10.1016/j.micpath.2004.07.001
– volume: 22
  start-page: 943
  year: 2006
  ident: B68
  article-title: A new summarization method for Affymetrix probe level data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btl033
– volume: 35
  start-page: 233
  year: 2012
  ident: B88
  article-title: Regulatory T cells in cattle and their potential role in bovine paratuberculosis
  publication-title: Comp Immunol Microbiol Infect Dis
  doi: 10.1016/j.cimid.2012.01.004
– volume: 116
  start-page: 131
  year: 2007
  ident: B98
  article-title: Relationship between Mycobacterium avium subspecies paratuberculosis, IL-1alpha, and TRAF1 in primary bovine monocyte-derived macrophages
  publication-title: Vet Immunol Immunopathol
  doi: 10.1016/j.vetimm.2007.01.005
– volume: 6
  start-page: e20302
  year: 2011
  ident: B81
  article-title: Human macrophages infected with a high burden of ESAT-6-expressing M. tuberculosis undergo caspase-1- and cathepsin B-independent necrosis
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0020302
– volume: 194
  start-page: 984
  year: 2006
  ident: B42
  article-title: Region of difference 1 antigen-specific CD4+ memory T cells correlate with a favorable outcome of tuberculosis
  publication-title: J Infect Dis
  doi: 10.1086/507427
– volume: 466
  start-page: 973
  year: 2010
  ident: B106
  article-title: An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis
  publication-title: Nature
  doi: 10.1038/nature09247
– volume: 176
  start-page: 3707
  year: 2006
  ident: B9
  article-title: A mechanism of virulence: virulent Mycobacterium tuberculosis strain H37Rv, but not attenuated H37Ra, causes significant mitochondrial inner membrane disruption in macrophages leading to necrosis
  publication-title: J Immunol
  doi: 10.4049/jimmunol.176.6.3707
– volume: 12
  start-page: 352
  year: 2012
  ident: B79
  article-title: Revisiting the role of the granuloma in tuberculosis
  publication-title: Nat Rev Immunol
  doi: 10.1038/nri3211
– volume: 7
  start-page: e1002378
  year: 2011
  ident: B103
  article-title: Early secreted antigen ESAT-6 of Mycobacterium tuberculosis promotes protective T helper 17 cell responses in a Toll-like receptor-2-dependent manner
  publication-title: PLoS Pathog
  doi: 10.1371/journal.ppat.1002378
– volume: 41
  start-page: D991
  year: 2013
  ident: B66
  article-title: NCBI GEO: archive for functional genomics data sets - update
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gks1193
– volume: 13
  start-page: 121
  year: 2011
  ident: B8
  article-title: Regulation between survival, persistence, and elimination of intracellular mycobacteria: a nested equilibrium of delicate balances
  publication-title: Microbes Infect
  doi: 10.1016/j.micinf.2010.10.009
– volume: 71
  start-page: 6479
  year: 2003
  ident: B97
  article-title: Enhanced expression of interleukin-1alpha and tumor necrosis factor receptor-associated protein 1 in ileal tissues of cattle infected with Mycobacterium avium subsp. paratuberculosis
  publication-title: Infect Immun
  doi: 10.1128/IAI.71.11.6479-6486.2003
– volume: 34
  start-page: 213
  year: 2011
  ident: B95
  article-title: Type I interferon inhibits interleukin-1 production and inflammasome activation
  publication-title: Immunity
  doi: 10.1016/j.immuni.2011.02.006
– volume: 279
  start-page: 677
  year: 2004
  ident: B99
  article-title: Tumor necrosis factor receptor-associated factor (TRAF) 1 regulates CD40-induced TRAF2-mediated NF-kappaB activation
  publication-title: J Biol Chem
  doi: 10.1074/jbc.M310969200
– volume: 81
  start-page: 3960
  year: 2013
  ident: B34
  article-title: No holes barred: invasion of the intestinal mucosa by Mycobacterium avium subsp. paratuberculosis
  publication-title: Infect Immun
  doi: 10.1128/IAI.00575-13
– volume: 40
  start-page: 491
  year: 2009
  ident: B82
  article-title: Human alveolar macrophage gene responses to Mycobacterium tuberculosis strains H37Ra and H37Rv
  publication-title: Am J Respir Cell Mol Biol
  doi: 10.1165/rcmb.2008-0219OC
– volume: 59
  start-page: 167
  year: 2007
  ident: B69
  article-title: BoLA class I allele diversity and polymorphism in a herd of cattle
  publication-title: Immunogenetics
  doi: 10.1007/s00251-006-0173-7
– start-page: 109
  volume-title: Paratuberculosis: Organism, Disease, Control
  year: 2010
  ident: B85
  article-title: Host-pathogen interactions and intracellular survival of Mycobacterium avium subsp. paratuberculosis
  doi: 10.1079/9781845936136.0109
– volume: 31
  start-page: 475
  year: 2013
  ident: B32
  article-title: The immune response in tuberculosis
  publication-title: Annu Rev Immunol
  doi: 10.1146/annurev-immunol-032712-095939
– volume: 72
  start-page: 3089
  year: 2004
  ident: B87
  article-title: Model for immune responses to Mycobacterium avium subspecies paratuberculosis in cattle
  publication-title: Infect Immun
  doi: 10.1128/IAI.72.6.3089-3096.2004
– volume: 7
  start-page: 537
  year: 2009
  ident: B13
  article-title: Myths and misconceptions: the origin and evolution of Mycobacterium tuberculosis
  publication-title: Nat Rev Microbiol
  doi: 10.1038/nrmicro2165
– volume: 159
  start-page: 113
  year: 2014
  ident: B4
  article-title: Relevance of bovine tuberculosis research to the understanding of human disease: historical perspectives, approaches, and immunologic mechanisms
  publication-title: Vet Immunol Immunopathol
  doi: 10.1016/j.vetimm.2014.02.009
– volume: 70
  start-page: 5556
  year: 2002
  ident: B76
  article-title: Differential responses of bovine macrophages to Mycobacterium avium subsp paratuberculosis and Mycobacterium avium subsp avium
  publication-title: Infect Immun
  doi: 10.1128/IAI.70.10.5556-5561.2002
– volume: 154
  start-page: 3715
  year: 2008
  ident: B19
  article-title: rpoB sequence-based identification of Mycobacterium avium complex species
  publication-title: Microbiology
  doi: 10.1099/mic.0.2008/020164-0
– volume: 5
  start-page: 422
  year: 2014
  ident: B65
  article-title: Key hub and bottleneck genes differentiate the macrophage response to virulent and attenuated Mycobacterium bovis
  publication-title: Front Immunol
  doi: 10.3389/fimmu.2014.00422
– start-page: 68
  volume-title: Mycobacterium bovis Infection in Animals and Humans
  year: 2008
  ident: B29
  article-title: Economics of bovine tuberculosis
– volume: 111
  start-page: 3496
  year: 2014
  ident: B75
  article-title: Gene expression differences underlying genotype-by-genotype specificity in a host-parasite system
  publication-title: Proc Natl Acad Sci U S A
  doi: 10.1073/pnas.1318628111
– volume: 163
  start-page: 115
  year: 2002
  ident: B31
  article-title: Mycobacterium bovis infection and tuberculosis in cattle
  publication-title: Vet J
  doi: 10.1053/tvjl.2001.0655
– volume: 128
  start-page: 44
  year: 2009
  ident: B89
  article-title: Mycobacterium avium subspecies paratuberculosis suppresses expression of IL-12p40 and iNOS genes induced by signalling through CD40 in bovine monocyte-derived macrophages
  publication-title: Vet Immunol Immunopathol
  doi: 10.1016/j.vetimm.2008.10.294
– volume: 47
  start-page: 1236
  year: 1997
  ident: B11
  article-title: A novel pathogenic taxon of the Mycobacterium tuberculosis complex, Canetti: characterization of an exceptional isolate from Africa
  publication-title: Int J Syst Bacteriol
  doi: 10.1099/00207713-47-4-1236
– volume: 9
  start-page: 1101
  year: 2008
  ident: B48
  article-title: Tuberculosis: unsealing the apoptotic envelope
  publication-title: Nat Immunol
  doi: 10.1038/ni1008-1101
– volume: 188
  start-page: 711
  year: 2006
  ident: B18
  article-title: Whole-genome plasticity among Mycobacterium avium subspecies: insights from comparative genomic hybridizations
  publication-title: J Bacteriol
  doi: 10.1128/JB.188.2.711-723.2006
– volume: 25
  start-page: 415
  year: 2009
  ident: B67
  article-title: Array quality metrics – a bioconductor package for quality assessment of microarray data
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btn647
– volume: 14
  start-page: 230
  year: 2013
  ident: B64
  article-title: Whole-transcriptome, high-throughput RNA sequence analysis of the bovine macrophage response to Mycobacterium bovis infection in vitro
  publication-title: BMC Genomics
  doi: 10.1186/1471-2164-14-230
– volume: 8
  start-page: 296
  year: 2010
  ident: B49
  article-title: Regulation of antigen presentation by Mycobacterium tuberculosis: a role for Toll-like receptors
  publication-title: Nat Rev Microbiol
  doi: 10.1038/nrmicro2321
– volume: 2012
  start-page: 872710
  year: 2012
  ident: B70
  article-title: The major histocompatibility complex in bovines: a review
  publication-title: ISRN Vet Sci
  doi: 10.5402/2012/872710
– volume: 11
  start-page: 1170
  year: 2009
  ident: B6
  article-title: Mycobacterial survival strategies in the phagosome: defence against host stresses
  publication-title: Cell Microbiol
  doi: 10.1111/j.1462-5822.2009.01335.x
– volume: 7
  start-page: e32034
  year: 2012
  ident: B62
  article-title: Global gene expression and systems biology analysis of bovine monocyte-derived macrophages in response to in vitro challenge with Mycobacterium bovis
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0032034
– volume: 88
  start-page: 1
  year: 2009
  ident: B39
  article-title: A review of prevalences of paratuberculosis in farmed animals in Europe
  publication-title: Prev Vet Med
  doi: 10.1016/j.prevetmed.2008.07.003
– volume: 57
  start-page: 205
  year: 2010
  ident: B27
  article-title: Bovine tuberculosis: a review of current and emerging diagnostic techniques in view of their relevance for disease control and eradication
  publication-title: Transbound Emerg Dis
  doi: 10.1111/j.1865-1682.2010.01148.x
– volume: 142
  start-page: 1
  year: 1975
  ident: B46
  article-title: Phagosome-lysosome interactions in cultured macrophages infected with virulent tubercle bacilli. Reversal of the usual nonfusion pattern and observations on bacterial survival
  publication-title: J Exp Med
  doi: 10.1084/jem.142.1.1
– volume: 7
  start-page: 353
  year: 2012
  ident: B5
  article-title: Tuberculosis pathogenesis and immunity
  publication-title: Annu Rev Pathol
  doi: 10.1146/annurev-pathol-011811-132458
– volume: 4
  start-page: 279
  year: 2011
  ident: B7
  article-title: Apoptosis is an innate defense function of macrophages against Mycobacterium tuberculosis
  publication-title: Mucosal Immunol
  doi: 10.1038/mi.2011.3
– volume: 505
  start-page: 218
  year: 2014
  ident: B51
  article-title: Mycobacteria manipulate macrophage recruitment through coordinated use of membrane lipids
  publication-title: Nature
  doi: 10.1038/nature12799
– start-page: 148
  volume-title: Investing in Animal Health Research to Alleviate Poverty
  year: 2002
  ident: B28
– volume: 47
  start-page: 1002
  year: 2009
  ident: B21
  article-title: Genomic comparison of PE and PPE genes in the Mycobacterium avium complex
  publication-title: J Clin Microbiol
  doi: 10.1128/JCM.01313-08
– volume: 40
  start-page: 179
  year: 1999
  ident: B38
  article-title: Herd-level economic losses associated with Johne’s disease on US dairy operations
  publication-title: Prev Vet Med
  doi: 10.1016/S0167-5877(99)00037-9
– start-page: 169
  volume-title: Mycobacterium bovis Infection in Animals and Humans
  year: 1995
  ident: B26
  article-title: Regional and country status report
– volume: 9
  start-page: e1003479
  year: 2013
  ident: B105
  article-title: Reprogramming of murine macrophages through TLR2 confers viral resistance via TRAF3-mediated, enhanced interferon production
  publication-title: PLoS Pathog
  doi: 10.1371/journal.ppat.1003479
– volume: 27
  start-page: 537
  year: 2011
  ident: B36
  article-title: Pathogenesis of paratuberculosis
  publication-title: Vet Clin North Am Food Anim Pract
  doi: 10.1016/j.cvfa.2011.07.001
– volume-title: Bergey’s Manual of Systematic Bacteriology
  year: 1984
  ident: B1
– volume: 8
  start-page: 610
  year: 2007
  ident: B102
  article-title: Direct extracellular interaction between the early secreted antigen ESAT-6 of Mycobacterium tuberculosis and TLR2 inhibits TLR signaling in macrophages
  publication-title: Nat Immunol
  doi: 10.1038/ni1468
– volume: 5
  start-page: e1000234
  issue: 3
  year: 2009
  ident: B40
  article-title: Where are all the Mycobacterium avium subspecies paratuberculosis in patients with Crohn’s disease?
  publication-title: PLoS Pathog
  doi: 10.1371/journal.ppat.1000234
– volume: 9
  start-page: 692
  year: 2009
  ident: B54
  article-title: Transcriptional control of the inflammatory response
  publication-title: Nat Rev Immunol
  doi: 10.1038/nri2634
– volume: 7
  start-page: e1001307
  year: 2011
  ident: B83
  article-title: Human macrophage responses to clinical isolates from the Mycobacterium tuberculosis complex discriminate between ancient and modern lineages
  publication-title: PLoS Pathog
  doi: 10.1371/journal.ppat.1001307
– volume: 24
  start-page: 1841
  year: 2012
  ident: B104
  article-title: Roles and underlying mechanisms of ESAT-6 in the context of Mycobacterium tuberculosis-host interaction from a systems biology perspective
  publication-title: Cell Signal
  doi: 10.1016/j.cellsig.2012.05.014
– volume: 4
  start-page: 670
  year: 2006
  ident: B12
  article-title: Bottlenecks and broomsticks: the molecular evolution of Mycobacterium bovis
  publication-title: Nat Rev Microbiol
  doi: 10.1038/nrmicro1472
– volume: 2
  start-page: 7
  year: 2012
  ident: B17
  article-title: Computational genomics-proteomics and phylogeny analysis of twenty one mycobacterial genomes (tuberculosis & non-tuberculosis strains)
  publication-title: Microb Inform Exp
  doi: 10.1186/2042-5783-2-7
SSID ssj0000493335
Score 2.1493995
SecondaryResourceType review_article
Snippet Mycobacterial infections are major causes of morbidity and mortality in cattle and are also potential zoonotic agents with implications for human health....
SourceID doaj
pubmedcentral
proquest
pubmed
crossref
SourceType Open Website
Open Access Repository
Aggregation Database
Index Database
Enrichment Source
StartPage 536
SubjectTerms Cattle
Gene Expression
Immunology
macrophage
Microarray
Mycobacterium bovis
Tuberculosis
Title Comparative Functional Genomics and the Bovine Macrophage Response to Strains of the Mycobacterium Genus
URI https://www.ncbi.nlm.nih.gov/pubmed/25414700
https://www.proquest.com/docview/1637551010
https://pubmed.ncbi.nlm.nih.gov/PMC4220711
https://doaj.org/article/7a1270ad73f140a69b238dba14a48ac0
Volume 5
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
journalDatabaseRights – providerCode: PRVAON
  databaseName: DOAJ Directory of Open Access Journals
  customDbUrl:
  eissn: 1664-3224
  dateEnd: 99991231
  omitProxy: false
  ssIdentifier: ssj0000493335
  issn: 1664-3224
  databaseCode: DOA
  dateStart: 20100101
  isFulltext: true
  titleUrlDefault: https://www.doaj.org/
  providerName: Directory of Open Access Journals
– providerCode: PRVHPJ
  databaseName: ROAD: Directory of Open Access Scholarly Resources
  customDbUrl:
  eissn: 1664-3224
  dateEnd: 99991231
  omitProxy: false
  ssIdentifier: ssj0000493335
  issn: 1664-3224
  databaseCode: M~E
  dateStart: 20100101
  isFulltext: true
  titleUrlDefault: https://road.issn.org
  providerName: ISSN International Centre
link http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwrV1Lj9MwELZgBRIXxJvyWBmJC4eocezU8RFWu-KyKw4g9WaNHVstIilqGqS97G_fGbvbbRGCC5cckkkymm_smbGtbxh7H8lzjXBFkG1dKN2oAoQwhYmJekjFRkFqNqEvLpr53HzZa_VFZ8IyPXA23FQD7Y1Cq2XEWgBmxmGQaR0IBaoBn6p1zHr2iqnvOe-VUtZ5XxKrMDONy64b6SgXsWXXiZH5Ng4luv4_5Zi_H5Xciz1nj9jDbdLIP2ZlH7M7oX_C7uc2kpdP2eLklsKbU6DK63uc-Fe7pR849C3HRI87Wj4IvAPq27XAmYSv8xHZwDcrPqR2EQNfxSR8fulxrCcu57Gjb43DM_bt7PTryedi20Gh8FLrWVHXXpVB6sYBBZ5WSoPGA8RAlCC8dwI0WrFxBus8X-m2bMvoTIxelqYFL5-zo37Vh5eMVyB9BSLMSuLIctF5JcHp2IZKKKebCZve2NP6Lb04qf3DYplBCNiEgCUEbEJgwj7s3viZqTX-IvuJINrJESl2uoGuYreuYv_lKhP27gZgi4OIdkagD6txsJiU6ppmJ5R5kQHf_aqiRum6xCf6wBUOdDl80i8XiahbVRVmcOLV_1D-NXtA5sirP2_Y0WY9hrfsnv-1WQ7rY3ZXz5vjNAbwen51eg1YTA4x
linkProvider Directory of Open Access Journals
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=Comparative+functional+genomics+and+the+bovine+macrophage+response+to+strains+of+the+mycobacterium+genus&rft.jtitle=Frontiers+in+immunology&rft.au=Rue-Albrecht%2C+K%C3%A9vin&rft.au=Magee%2C+David+A&rft.au=Killick%2C+Kate+E&rft.au=Nalpas%2C+Nicolas+C&rft.date=2014&rft.issn=1664-3224&rft.eissn=1664-3224&rft.volume=5&rft.spage=536&rft_id=info:doi/10.3389%2Ffimmu.2014.00536&rft_id=info%3Apmid%2F25414700&rft.externalDocID=25414700
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1664-3224&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1664-3224&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1664-3224&client=summon