Horizontal gene transfer and adaptive evolution in bacteria

Horizontal gene transfer (HGT) is arguably the most conspicuous feature of bacterial evolution. Evidence for HGT is found in most bacterial genomes. Although HGT can considerably alter bacterial genomes, not all transfer events may be biologically significant and may instead represent the outcome of...

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Vydáno v:Nature reviews. Microbiology Ročník 20; číslo 4; s. 206 - 218
Hlavní autoři: Arnold, Brian J, Huang, I-Ting, Hanage, William P
Médium: Journal Article
Jazyk:angličtina
Vydáno: England Nature Publishing Group 01.04.2022
Témata:
Algorithms
Bacteria
Bacteria - genetics
Computational Biology
Deoxyribonucleic acid
DNA
Evolution
Evolution & development
Evolution, Molecular
Gene transfer
Gene Transfer, Horizontal
Genome, Bacterial - genetics
Genomes
Genomics
Horizontal transfer
Phylogeny
Positive selection
Signatures
ISSN:1740-1526, 1740-1534, 1740-1534
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Shrnutí:Horizontal gene transfer (HGT) is arguably the most conspicuous feature of bacterial evolution. Evidence for HGT is found in most bacterial genomes. Although HGT can considerably alter bacterial genomes, not all transfer events may be biologically significant and may instead represent the outcome of an incessant evolutionary process that only occasionally has a beneficial purpose. When adaptive transfers occur, HGT and positive selection may result in specific, detectable signatures in genomes, such as gene-specific sweeps or increased transfer rates for genes that are ecologically relevant. In this Review, we first discuss the various mechanisms whereby HGT occurs, how the genetic signatures shape patterns of genomic variation and the distinct bioinformatic algorithms developed to detect these patterns. We then discuss the evolutionary theory behind HGT and positive selection in bacteria, and discuss the approaches developed over the past decade to detect transferred DNA that may be involved in adaptation to new environments.
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ISSN:1740-1526
1740-1534
1740-1534
DOI:10.1038/s41579-021-00650-4