Genome characterization of Iranian sophora yellow stunt virus isolates and construction of infectious clones

Sophora yellow stunt virus is a species of the genus Nanovirus. Sophora yellow stunt virus (SYSV) has a wide geographical distribution in Iran. In the current study, SYSV was identified from Kerman province (south‐eastern Iran) in five symptomatic aromatic herbs that are commonly used in the Iranian...

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Vydáno v:Plant pathology Ročník 72; číslo 7; s. 1283 - 1292
Hlavní autoři: Esmaeili, Maryam, Heydarnejad, Jahangir, Hasanvand, Vahid, Massumi, Hossain, Kvarnheden, Anders, Varsani, Arvind
Médium: Journal Article
Jazyk:angličtina
Vydáno: Oxford Wiley Subscription Services, Inc 01.09.2023
Témata:
Agricultural Science
Apiaceae
aromatic herbs
basil
China
circular DNA
Cloning
Crop production
Deoxyribonucleic acid
diet
dill
Dimers
DNA
Economic importance
fenugreek
Gene sequencing
genome
Genomic analysis
Genomics
Geographical distribution
Herbs
Inoculation
Inserts
Iran
Jordbruksvetenskap
Lamiaceae
Microbiology
Mikrobiologi
mint
Nanoviridae
Nanovirus
Nitrariaceae
Nucleotides
parsley
Pathogenesis
plant pathology
Plant species
Plant virus diseases
Plant viruses
Polymerase chain reaction
Sequence analysis
Sophora alopecuroides
sophora yellow stunt virus
Viruses
Iran
China
ISSN:0032-0862, 1365-3059, 1365-3059
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Abstract Sophora yellow stunt virus is a species of the genus Nanovirus. Sophora yellow stunt virus (SYSV) has a wide geographical distribution in Iran. In the current study, SYSV was identified from Kerman province (south‐eastern Iran) in five symptomatic aromatic herbs that are commonly used in the Iranian diet: parsley, dill, fenugreek, mint and basil. These infections were detected using either a PCR assay or high‐throughput sequencing. Eight circular single‐stranded DNA genomic components of five SYSV isolates as well as a new sophora isolate from south‐western Iran were PCR amplified, sequenced and characterized. Sequence analysis of SYSV genomic components showed that the Iranian isolates shared nucleotide identities of 64%–100% with each other and 63%–93% with an isolate from China. DNA‐Rs and DNA‐Cs were found to be the most diverse components relative to the others. Furthermore, associated alphasatellite molecules with the basil sample shared nucleotide identities of 80.7%–99.9% with the counterpart alphasatellite molecules in GenBank. Infectious clones for the genomic DNAs of SYSV were constructed using head‐to‐tail dimeric or partial dimeric inserts. The pathogenesis of SYSV was demonstrated by inoculation with the infectious DNA clones that induced typical symptoms in five plant species. Given the wide distribution of SYSV and its common host (Sophora alopecuroides) throughout Iran, as well as detection of the virus in plants of four families (Fabaceae, Apiaceae, Lamiaceae and Nitrariaceae), this virus is of economic importance within leguminous crops and in production of aromatic herbs in Iran. Sophora yellow stunt virus was identified in five symptomatic aromatic herbs in Iran followed by construction of infectious cloned genome components and demonstration of the viral pathogenesis by fulfilling Koch's postulates.
AbstractList Sophora yellow stunt virus is a species of the genus Nanovirus. Sophora yellow stunt virus (SYSV) has a wide geographical distribution in Iran. In the current study, SYSV was identified from Kerman province (south-eastern Iran) in five symptomatic aromatic herbs that are commonly used in the Iranian diet: parsley, dill, fenugreek, mint and basil. These infections were detected using either a PCR assay or high-throughput sequencing. Eight circular single-stranded DNA genomic components of five SYSV isolates as well as a new sophora isolate from south-western Iran were PCR amplified, sequenced and characterized. Sequence analysis of SYSV genomic components showed that the Iranian isolates shared nucleotide identities of 64%-100% with each other and 63%-93% with an isolate from China. DNA-Rs and DNA-Cs were found to be the most diverse components relative to the others. Furthermore, associated alphasatellite molecules with the basil sample shared nucleotide identities of 80.7%-99.9% with the counterpart alphasatellite molecules in GenBank. Infectious clones for the genomic DNAs of SYSV were constructed using head-to-tail dimeric or partial dimeric inserts. The pathogenesis of SYSV was demonstrated by inoculation with the infectious DNA clones that induced typical symptoms in five plant species. Given the wide distribution of SYSV and its common host (Sophora alopecuroides) throughout Iran, as well as detection of the virus in plants of four families (Fabaceae, Apiaceae, Lamiaceae and Nitrariaceae), this virus is of economic importance within leguminous crops and in production of aromatic herbs in Iran.
Sophora yellow stunt virus is a species of the genus Nanovirus. Sophora yellow stunt virus (SYSV) has a wide geographical distribution in Iran. In the current study, SYSV was identified from Kerman province (south‐eastern Iran) in five symptomatic aromatic herbs that are commonly used in the Iranian diet: parsley, dill, fenugreek, mint and basil. These infections were detected using either a PCR assay or high‐throughput sequencing. Eight circular single‐stranded DNA genomic components of five SYSV isolates as well as a new sophora isolate from south‐western Iran were PCR amplified, sequenced and characterized. Sequence analysis of SYSV genomic components showed that the Iranian isolates shared nucleotide identities of 64%–100% with each other and 63%–93% with an isolate from China. DNA‐Rs and DNA‐Cs were found to be the most diverse components relative to the others. Furthermore, associated alphasatellite molecules with the basil sample shared nucleotide identities of 80.7%–99.9% with the counterpart alphasatellite molecules in GenBank. Infectious clones for the genomic DNAs of SYSV were constructed using head‐to‐tail dimeric or partial dimeric inserts. The pathogenesis of SYSV was demonstrated by inoculation with the infectious DNA clones that induced typical symptoms in five plant species. Given the wide distribution of SYSV and its common host (Sophora alopecuroides) throughout Iran, as well as detection of the virus in plants of four families (Fabaceae, Apiaceae, Lamiaceae and Nitrariaceae), this virus is of economic importance within leguminous crops and in production of aromatic herbs in Iran. Sophora yellow stunt virus was identified in five symptomatic aromatic herbs in Iran followed by construction of infectious cloned genome components and demonstration of the viral pathogenesis by fulfilling Koch's postulates.
Author Massumi, Hossain
Kvarnheden, Anders
Hasanvand, Vahid
Heydarnejad, Jahangir
Esmaeili, Maryam
Varsani, Arvind
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  organization: Swedish University of Agricultural Sciences
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  surname: Varsani
  fullname: Varsani, Arvind
  organization: University of Cape Town
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CitedBy_id crossref_primary_10_3390_v17091213
crossref_primary_10_1007_s13313_023_00958_0
crossref_primary_10_1111_jph_70144
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Snippet Sophora yellow stunt virus is a species of the genus Nanovirus. Sophora yellow stunt virus (SYSV) has a wide geographical distribution in Iran. In the current...
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SubjectTerms Agricultural Science
Apiaceae
aromatic herbs
basil
China
circular DNA
Cloning
Crop production
Deoxyribonucleic acid
diet
dill
Dimers
DNA
Economic importance
fenugreek
Gene sequencing
genome
Genomic analysis
Genomics
Geographical distribution
Herbs
Inoculation
Inserts
Iran
Jordbruksvetenskap
Lamiaceae
Microbiology
Mikrobiologi
mint
Nanoviridae
Nanovirus
Nitrariaceae
Nucleotides
parsley
Pathogenesis
plant pathology
Plant species
Plant virus diseases
Plant viruses
Polymerase chain reaction
Sequence analysis
Sophora alopecuroides
sophora yellow stunt virus
Viruses
Title Genome characterization of Iranian sophora yellow stunt virus isolates and construction of infectious clones
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https://res.slu.se/id/publ/122334
Volume 72
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