A History-Based Resource Manager for Genome Analysis Workflows Applications on Clusters with Heterogeneous Nodes

Bioinformatics workflows require large amounts of resources and are commonly executed in clusters. Determining the adequate amount of resources for bioinformatics applications is a tricky matter, since the resource usage of a single application might vary substantially from one execution to the next...

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Veröffentlicht in:	International journal of parallel programming Jg. 47; H. 2; S. 317 - 342
Hauptverfasser:	Badosa, Ferran, Espinosa, Antonio, Acevedo, Cesar, Vera, Gonzalo, Ripoll, Ana
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	New York Springer US 01.04.2019 Springer Nature B.V
Schlagworte:	Algorithms Bioinformatics Clusters Computer Science Management systems Multiprogramming Nodes Performance enhancement Processor Architectures Resource management Resource scheduling Servers Software Engineering/Programming and Operating Systems Theory of Computation Workflow Resource manager Resource sharing Makespan Bioinformatics workflows Multivariate regression prediction Slowdown Scheduling algorithm
ISSN:	0885-7458, 1573-7640
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Abstract	Bioinformatics workflows require large amounts of resources and are commonly executed in clusters. Determining the adequate amount of resources for bioinformatics applications is a tricky matter, since the resource usage of a single application might vary substantially from one execution to the next. Resource management systems in clusters don’t consider these variations and subsequent needs. As a result, the computing power offered by clusters is not harnessed properly, compromising both application performance and resource efficiency. To tackle these issues, we propose a History-Based Resource Manager for bioinformatics workflows applications running on clusters with heterogeneous nodes. The proposed resource manager features a prediction model that generates multiple performance predictions for each job under different combinations of cluster resources. Furthermore, the proposed resource manager includes a scheduling algorithm that considers the degree of multiprogramming of the nodes, scheduling combinations of applications for simultaneous same-node execution upon their compatibility. To test the proposed resource manager, we process two workloads formed by different amounts of workflows made up by common bioinformatics applications. Results prove that for the given cases, the proposed resource manager improves the performance obtained with SLURM, using First Come First Served policy. The proposal shows an average workflow makespan improvement range between 28 and 35%, averaging 32%, an average workflow efficiency improvement range between 75 and 83%, averaging 79%, and an average resource usage improvement range between 96 and 101%, averaging 99%. Furthermore, the proposed scheduling algorithm can improve the average workflow makespan by a range of values between 26 and 36%, averaging 31%, compared to Max–Min and Min–Min algorithms.
AbstractList	Bioinformatics workflows require large amounts of resources and are commonly executed in clusters. Determining the adequate amount of resources for bioinformatics applications is a tricky matter, since the resource usage of a single application might vary substantially from one execution to the next. Resource management systems in clusters don’t consider these variations and subsequent needs. As a result, the computing power offered by clusters is not harnessed properly, compromising both application performance and resource efficiency. To tackle these issues, we propose a History-Based Resource Manager for bioinformatics workflows applications running on clusters with heterogeneous nodes. The proposed resource manager features a prediction model that generates multiple performance predictions for each job under different combinations of cluster resources. Furthermore, the proposed resource manager includes a scheduling algorithm that considers the degree of multiprogramming of the nodes, scheduling combinations of applications for simultaneous same-node execution upon their compatibility. To test the proposed resource manager, we process two workloads formed by different amounts of workflows made up by common bioinformatics applications. Results prove that for the given cases, the proposed resource manager improves the performance obtained with SLURM, using First Come First Served policy. The proposal shows an average workflow makespan improvement range between 28 and 35%, averaging 32%, an average workflow efficiency improvement range between 75 and 83%, averaging 79%, and an average resource usage improvement range between 96 and 101%, averaging 99%. Furthermore, the proposed scheduling algorithm can improve the average workflow makespan by a range of values between 26 and 36%, averaging 31%, compared to Max–Min and Min–Min algorithms.
Author	Espinosa, Antonio Badosa, Ferran Acevedo, Cesar Ripoll, Ana Vera, Gonzalo
Author_xml	– sequence: 1 givenname: Ferran orcidid: 0000-0002-9162-2918 surname: Badosa fullname: Badosa, Ferran email: ferran.badosa@uab.cat organization: Computer Architecture and Operative Systems Department, Universitat Autònoma de Barcelona – sequence: 2 givenname: Antonio surname: Espinosa fullname: Espinosa, Antonio organization: Computer Architecture and Operative Systems Department, Universitat Autònoma de Barcelona – sequence: 3 givenname: Cesar surname: Acevedo fullname: Acevedo, Cesar organization: Computer Architecture and Operative Systems Department, Universitat Autònoma de Barcelona – sequence: 4 givenname: Gonzalo surname: Vera fullname: Vera, Gonzalo organization: Centre for Research in Agricultural Genomics – sequence: 5 givenname: Ana surname: Ripoll fullname: Ripoll, Ana organization: Computer Architecture and Operative Systems Department, Universitat Autònoma de Barcelona
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Cites_doi	10.1016/j.future.2008.02.003 10.1109/71.932718 10.1038/ng0506-500 10.1038/nmeth.4106 10.7717/peerj.167 10.1093/nar/gkt328 10.1007/978-1-4471-5298-9_6 10.1371/journal.pone.0076935 10.1016/0022-2836(70)90057-4 10.1093/bioinformatics/btu146 10.1016/j.future.2010.09.004 10.1002/cpe.3735 10.1371/journal.pone.0027731 10.1186/gb-2010-11-8-r86 10.1145/1048935.1050182 10.1109/FCCM.2012.36 10.1007/978-3-319-32152-3_22 10.1007/11407522_3 10.1109/eScience.2012.6404430 10.1007/978-3-642-55195-6_21 10.1002/0471250953.bi0303s26 10.1109/ICNISC.2015.145 10.1002/0471250953.bi1107s32 10.1007/3-540-47867-1_28 10.1109/CLOUD.2010.38 10.1109/MEMCOD.2012.6292304 10.1101/018234
ContentType	Journal Article
Copyright	The Author(s) 2018 International Journal of Parallel Programming is a copyright of Springer, (2018). All Rights Reserved. © 2018. This work is published under http://creativecommons.org/licenses/by/4.0 (the “License”). Notwithstanding the ProQuest Terms and Conditions, you may use this content in accordance with the terms of the License.
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References	Figueira (CR16) 2001; 12 Goecks (CR1) 2010; 11 Ladunga (CR32) 2009; 26 CR17 CR39 CR38 Murali (CR14) 2016; 28 Baruzzo (CR28) 2017; 14 CR37 Leipzig (CR3) 2017; 18 Prodan (CR15) 2007; 15 CR36 CR13 CR35 Needleman (CR5) 1970; 48 CR34 CR11 CR33 Reich (CR9) 2006; 38 CR10 CR31 CR30 Shanthini (CR12) 2012; 45 Wolstencroft (CR2) 2013; 41.W1 Iosup (CR19) 2008; 24 Borozan (CR25) 2013; 8 Christopher (CR23) 1997; 11 CR6 CR8 CR7 CR27 Liu (CR24) 2011; 6 CR22 CR21 CR20 Seneviratne (CR18) 2011; 27 Warnow, Chauve, El-Mabrouk, Tannier (CR29) 2013 Cock (CR4) 2013; 1 Otto (CR26) 2014; 30 J Leipzig (600_CR3) 2017; 18 K Liu (600_CR24) 2011; 6 SB Needleman (600_CR5) 1970; 48 J Shanthini (600_CR12) 2012; 45 A Christopher (600_CR23) 1997; 11 600_CR38 600_CR37 K Wolstencroft (600_CR2) 2013; 41.W1 600_CR17 600_CR39 600_CR34 600_CR11 600_CR33 600_CR7 A Iosup (600_CR19) 2008; 24 600_CR36 600_CR6 M Reich (600_CR9) 2006; 38 600_CR13 S Seneviratne (600_CR18) 2011; 27 IS Ladunga (600_CR32) 2009; 26 600_CR35 600_CR30 G Baruzzo (600_CR28) 2017; 14 600_CR10 600_CR31 SM Figueira (600_CR16) 2001; 12 J Goecks (600_CR1) 2010; 11 I Borozan (600_CR25) 2013; 8 T Warnow (600_CR29) 2013 PJA Cock (600_CR4) 2013; 1 P Murali (600_CR14) 2016; 28 R Prodan (600_CR15) 2007; 15 600_CR8 600_CR27 C Otto (600_CR26) 2014; 30 600_CR22 600_CR21 600_CR20
References_xml	– ident: CR22 – volume: 24 start-page: 672 issue: 7 year: 2008 end-page: 686 ident: CR19 article-title: The grid workloads archive publication-title: Future Gener. Comput. Syst. doi: 10.1016/j.future.2008.02.003 – volume: 12 start-page: 653 issue: 6 year: 2001 end-page: 670 ident: CR16 article-title: A slowdown model for applications executing on time-shared clusters of workstations publication-title: IEEE Trans. Parallel Distrib. Syst. doi: 10.1109/71.932718 – volume: 38 start-page: 500 issue: 5 year: 2006 end-page: 501 ident: CR9 article-title: GenePattern 2.0 publication-title: Nat. Genet. doi: 10.1038/ng0506-500 – ident: CR39 – ident: CR37 – ident: CR30 – volume: 14 start-page: 135 issue: 2 year: 2017 end-page: 139 ident: CR28 article-title: Simulation-based comprehensive benchmarking of RNA-seq aligners publication-title: Nat. Methods doi: 10.1038/nmeth.4106 – ident: CR10 – volume: 1 start-page: e167 year: 2013 ident: CR4 article-title: Galaxy tools and workflows for sequence analysis with applications in molecular plant pathology publication-title: PeerJ doi: 10.7717/peerj.167 – ident: CR33 – volume: 41.W1 start-page: W557 year: 2013 end-page: W561 ident: CR2 article-title: The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkt328 – ident: CR35 – ident: CR6 – start-page: 85 year: 2013 end-page: 146 ident: CR29 article-title: Large-scale multiple sequence alignment and phylogeny estimation publication-title: Models and Algorithms for Genome Evolution doi: 10.1007/978-1-4471-5298-9_6 – ident: CR8 – volume: 8 start-page: e76935 issue: 10 year: 2013 ident: CR25 article-title: Evaluation of alignment algorithms for discovery and identification of pathogens using RNA-Seq publication-title: PLoS ONE doi: 10.1371/journal.pone.0076935 – ident: CR27 – volume: 15 start-page: 193 issue: 4 year: 2007 end-page: 211 ident: CR15 article-title: Specification and runtime workflow support in the ASKALON Grid environment publication-title: Sci. Program. – ident: CR21 – ident: CR38 – volume: 26 start-page: 3.3.1 year: 2009 end-page: 3.3.26 ident: CR32 article-title: Finding similar nucleotide sequences using network BLAST searches. publication-title: Curr. Protoc. Bioinform. – volume: 18 start-page: 530 issue: 3 year: 2017 end-page: 536 ident: CR3 article-title: A review of bioinformatic pipeline frameworks publication-title: Brief. Bioinform. – ident: CR17 – ident: CR31 – ident: CR13 – volume: 48 start-page: 443 issue: 3 year: 1970 end-page: 453 ident: CR5 article-title: A general method applicable to the search for similarities in the amino acid sequence of two proteins publication-title: J. Mol. Biol. doi: 10.1016/0022-2836(70)90057-4 – ident: CR11 – volume: 30 start-page: 1837 issue: 13 year: 2014 end-page: 1843 ident: CR26 article-title: Lacking alignments? The next-generation sequencing mapper segemehl revisited publication-title: Bioinformatics doi: 10.1093/bioinformatics/btu146 – volume: 11 start-page: 11 issue: 1–5 year: 1997 end-page: 73 ident: CR23 article-title: Locally weighted learning publication-title: Artif. Intell. Rev. – volume: 27 start-page: 245 issue: 3 year: 2011 end-page: 255 ident: CR18 article-title: Task profiling model for load profile prediction. publication-title: Future Gener. Comput. Syst. doi: 10.1016/j.future.2010.09.004 – volume: 28 start-page: 2685 issue: 9 year: 2016 end-page: 2710 ident: CR14 article-title: Qespera: an adaptive framework for prediction of queue waiting times in supercomputer systems publication-title: Concurr. Comput. Pract. Exp. doi: 10.1002/cpe.3735 – ident: CR34 – ident: CR36 – ident: CR7 – volume: 45 start-page: 39 issue: 7 year: 2012 end-page: 43 ident: CR12 article-title: Anatomy study of execution time predictions in heterogeneous systems publication-title: Int. J. Comput. Appl. – volume: 6 start-page: e27731 issue: 11 year: 2011 ident: CR24 article-title: RAxML and FastTree: comparing two methods for large-scale maximum likelihood phylogeny estimation publication-title: PLoS ONE doi: 10.1371/journal.pone.0027731 – ident: CR20 – volume: 11 start-page: R86 issue: 8 year: 2010 ident: CR1 article-title: Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences publication-title: Genome Biol. doi: 10.1186/gb-2010-11-8-r86 – volume: 48 start-page: 443 issue: 3 year: 1970 ident: 600_CR5 publication-title: J. Mol. Biol. doi: 10.1016/0022-2836(70)90057-4 – volume: 45 start-page: 39 issue: 7 year: 2012 ident: 600_CR12 publication-title: Int. J. Comput. Appl. – ident: 600_CR17 – ident: 600_CR20 doi: 10.1145/1048935.1050182 – volume: 1 start-page: e167 year: 2013 ident: 600_CR4 publication-title: PeerJ doi: 10.7717/peerj.167 – volume: 15 start-page: 193 issue: 4 year: 2007 ident: 600_CR15 publication-title: Sci. Program. – volume: 28 start-page: 2685 issue: 9 year: 2016 ident: 600_CR14 publication-title: Concurr. Comput. Pract. Exp. doi: 10.1002/cpe.3735 – volume: 6 start-page: e27731 issue: 11 year: 2011 ident: 600_CR24 publication-title: PLoS ONE doi: 10.1371/journal.pone.0027731 – ident: 600_CR36 doi: 10.1109/FCCM.2012.36 – ident: 600_CR37 doi: 10.1007/978-3-319-32152-3_22 – volume: 41.W1 start-page: W557 year: 2013 ident: 600_CR2 publication-title: Nucleic Acids Res. doi: 10.1093/nar/gkt328 – ident: 600_CR21 – ident: 600_CR22 doi: 10.1007/11407522_3 – volume: 8 start-page: e76935 issue: 10 year: 2013 ident: 600_CR25 publication-title: PLoS ONE doi: 10.1371/journal.pone.0076935 – volume: 12 start-page: 653 issue: 6 year: 2001 ident: 600_CR16 publication-title: IEEE Trans. Parallel Distrib. Syst. doi: 10.1109/71.932718 – ident: 600_CR34 – ident: 600_CR39 doi: 10.1109/eScience.2012.6404430 – ident: 600_CR33 doi: 10.1007/978-3-642-55195-6_21 – volume: 14 start-page: 135 issue: 2 year: 2017 ident: 600_CR28 publication-title: Nat. Methods doi: 10.1038/nmeth.4106 – volume: 30 start-page: 1837 issue: 13 year: 2014 ident: 600_CR26 publication-title: Bioinformatics doi: 10.1093/bioinformatics/btu146 – ident: 600_CR13 – volume: 11 start-page: 11 issue: 1–5 year: 1997 ident: 600_CR23 publication-title: Artif. Intell. Rev. – ident: 600_CR38 – volume: 26 start-page: 3.3.1 year: 2009 ident: 600_CR32 publication-title: Curr. Protoc. Bioinform. doi: 10.1002/0471250953.bi0303s26 – start-page: 85 volume-title: Models and Algorithms for Genome Evolution year: 2013 ident: 600_CR29 doi: 10.1007/978-1-4471-5298-9_6 – volume: 11 start-page: R86 issue: 8 year: 2010 ident: 600_CR1 publication-title: Genome Biol. doi: 10.1186/gb-2010-11-8-r86 – ident: 600_CR11 – ident: 600_CR6 doi: 10.1109/ICNISC.2015.145 – ident: 600_CR30 doi: 10.1002/0471250953.bi1107s32 – ident: 600_CR7 doi: 10.1007/3-540-47867-1_28 – ident: 600_CR8 doi: 10.1109/CLOUD.2010.38 – ident: 600_CR35 doi: 10.1109/MEMCOD.2012.6292304 – volume: 27 start-page: 245 issue: 3 year: 2011 ident: 600_CR18 publication-title: Future Gener. Comput. Syst. doi: 10.1016/j.future.2010.09.004 – ident: 600_CR31 – volume: 38 start-page: 500 issue: 5 year: 2006 ident: 600_CR9 publication-title: Nat. Genet. doi: 10.1038/ng0506-500 – volume: 24 start-page: 672 issue: 7 year: 2008 ident: 600_CR19 publication-title: Future Gener. Comput. Syst. doi: 10.1016/j.future.2008.02.003 – volume: 18 start-page: 530 issue: 3 year: 2017 ident: 600_CR3 publication-title: Brief. Bioinform. – ident: 600_CR27 doi: 10.1101/018234 – ident: 600_CR10
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Snippet	Bioinformatics workflows require large amounts of resources and are commonly executed in clusters. Determining the adequate amount of resources for...
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StartPage	317
SubjectTerms	Algorithms Bioinformatics Clusters Computer Science Management systems Multiprogramming Nodes Performance enhancement Processor Architectures Resource management Resource scheduling Servers Software Engineering/Programming and Operating Systems Theory of Computation Workflow
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Title	A History-Based Resource Manager for Genome Analysis Workflows Applications on Clusters with Heterogeneous Nodes
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