A comprehensive characterization of culturable endophytic bacteria of Paris polyphylla and their potential role in microalgal growth in co-culture
Expanding endophytes of endangered medicinal plant Paris polyphylla can provide a means to study endo-symbiotic relationships with emphasis on different traits such as plant growth promotion (PGP), host-defence mechanism, and secondary metabolites production. As in many instances, endophytic isolate...
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| Vydáno v: | Applied soil ecology : a section of Agriculture, ecosystems & environment Ročník 174; s. 104410 |
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| Hlavní autoři: | , , , , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
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Elsevier B.V
01.06.2022
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| ISSN: | 0929-1393, 1873-0272 |
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| Abstract | Expanding endophytes of endangered medicinal plant Paris polyphylla can provide a means to study endo-symbiotic relationships with emphasis on different traits such as plant growth promotion (PGP), host-defence mechanism, and secondary metabolites production. As in many instances, endophytic isolates selected based on few traits fail when they are further screened for their direct role in plants. Therefore, in this study, we aimed to conduct comprehensive analyses on the under-explored endophytic bacterial community of P. polyphylla from the Himalayan mountains. Culture-dependent method was adapted to isolate under-explored endophytic bacterial community from the rhizomes of P. polyphylla. Isolates were identified using 16S rRNA gene sequencing and screened for different characteristics such as ability to grow in different temperatures, pH, and NaCl concentration, siderophore production, phosphate solubilisation, and plant cell wall-degrading enzymes production. Key genes such as sfp, ituD, and genes encoding for NRPS, and PKS clusters involved in particular traits were identified. A total of 186 endophytic isolates were characterized, and assigned to 4 major phyla Firmicutes, Gammaproteobacteria, Alphaproteobacteria, and Actinobacteria. The stringent methodology identified 7.52% and 2.15% of the isolates as siderophore producers and phosphate solubilisers respectively. Draft genome of the potential PGP endophyte Bacillus paralicheniformis PPE102 was obtained and investigated for various traits related to plant-microbe interactions. Co-culture experiments showed that PPE102 induced growth and had a positive impact on the biochemical content of photosynthetic microalga Micractinium sp. GA001. This debut attempt characterized exclusive collection of endophytic bacteria from P. polyphylla. This isolated community can be further explored for unique, and commercially-important biological compounds.
•Culturable bacterial endophytes from endangered medicinal plant Paris polyphylla•Screened and characterized endophytic isolates in regard to different traits•Achieved in selection of candidate phenotypes with multiple trait characteristics•Determined draft genome of B. licheniformis PPE102 involved in different traits•PPE102 positively regulated growth and biochemical content of microalgae GA001. |
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| AbstractList | Expanding endophytes of endangered medicinal plant Paris polyphylla can provide a means to study endo-symbiotic relationships with emphasis on different traits such as plant growth promotion (PGP), host-defence mechanism, and secondary metabolites production. As in many instances, endophytic isolates selected based on few traits fail when they are further screened for their direct role in plants. Therefore, in this study, we aimed to conduct comprehensive analyses on the under-explored endophytic bacterial community of P. polyphylla from the Himalayan mountains. Culture-dependent method was adapted to isolate under-explored endophytic bacterial community from the rhizomes of P. polyphylla. Isolates were identified using 16S rRNA gene sequencing and screened for different characteristics such as ability to grow in different temperatures, pH, and NaCl concentration, siderophore production, phosphate solubilisation, and plant cell wall-degrading enzymes production. Key genes such as sfp, ituD, and genes encoding for NRPS, and PKS clusters involved in particular traits were identified. A total of 186 endophytic isolates were characterized, and assigned to 4 major phyla Firmicutes, Gammaproteobacteria, Alphaproteobacteria, and Actinobacteria. The stringent methodology identified 7.52% and 2.15% of the isolates as siderophore producers and phosphate solubilisers respectively. Draft genome of the potential PGP endophyte Bacillus paralicheniformis PPE102 was obtained and investigated for various traits related to plant-microbe interactions. Co-culture experiments showed that PPE102 induced growth and had a positive impact on the biochemical content of photosynthetic microalga Micractinium sp. GA001. This debut attempt characterized exclusive collection of endophytic bacteria from P. polyphylla. This isolated community can be further explored for unique, and commercially-important biological compounds.
•Culturable bacterial endophytes from endangered medicinal plant Paris polyphylla•Screened and characterized endophytic isolates in regard to different traits•Achieved in selection of candidate phenotypes with multiple trait characteristics•Determined draft genome of B. licheniformis PPE102 involved in different traits•PPE102 positively regulated growth and biochemical content of microalgae GA001. Expanding endophytes of endangered medicinal plant Paris polyphylla can provide a means to study endo-symbiotic relationships with emphasis on different traits such as plant growth promotion (PGP), host-defence mechanism, and secondary metabolites production. As in many instances, endophytic isolates selected based on few traits fail when they are further screened for their direct role in plants. Therefore, in this study, we aimed to conduct comprehensive analyses on the under-explored endophytic bacterial community of P. polyphylla from the Himalayan mountains. Culture-dependent method was adapted to isolate under-explored endophytic bacterial community from the rhizomes of P. polyphylla. Isolates were identified using 16S rRNA gene sequencing and screened for different characteristics such as ability to grow in different temperatures, pH, and NaCl concentration, siderophore production, phosphate solubilisation, and plant cell wall-degrading enzymes production. Key genes such as sfp, ituD, and genes encoding for NRPS, and PKS clusters involved in particular traits were identified. A total of 186 endophytic isolates were characterized, and assigned to 4 major phyla Firmicutes, Gammaproteobacteria, Alphaproteobacteria, and Actinobacteria. The stringent methodology identified 7.52% and 2.15% of the isolates as siderophore producers and phosphate solubilisers respectively. Draft genome of the potential PGP endophyte Bacillus paralicheniformis PPE102 was obtained and investigated for various traits related to plant-microbe interactions. Co-culture experiments showed that PPE102 induced growth and had a positive impact on the biochemical content of photosynthetic microalga Micractinium sp. GA001. This debut attempt characterized exclusive collection of endophytic bacteria from P. polyphylla. This isolated community can be further explored for unique, and commercially-important biological compounds. |
| ArticleNumber | 104410 |
| Author | Chikkaputtaiah, Channakeshavaiah Ahmed, Refad Velmurugan, Natarajan Basar, Egam Sonowal, Shashanka |
| Author_xml | – sequence: 1 givenname: Shashanka surname: Sonowal fullname: Sonowal, Shashanka organization: Biological Sciences Division, CSIR-North East Institute of Science and Technology (CSIR-NEIST), Branch Laboratory-Itanagar, Naharlagun 791 110, Arunachal Pradesh, India – sequence: 2 givenname: Refad surname: Ahmed fullname: Ahmed, Refad organization: Biological Sciences Division, CSIR-North East Institute of Science and Technology (CSIR-NEIST), Branch Laboratory-Itanagar, Naharlagun 791 110, Arunachal Pradesh, India – sequence: 3 givenname: Channakeshavaiah surname: Chikkaputtaiah fullname: Chikkaputtaiah, Channakeshavaiah organization: Academy of Scientific and Innovative Research (AcSIR), Ghaziabad 201 002, India – sequence: 4 givenname: Egam surname: Basar fullname: Basar, Egam organization: State Horticulture Research and Development Institute (Government of Arunachal Pradesh), Itanagar, Arunachal Pradesh, India – sequence: 5 givenname: Natarajan surname: Velmurugan fullname: Velmurugan, Natarajan email: natarajan@neist.res.in organization: Biological Sciences Division, CSIR-North East Institute of Science and Technology (CSIR-NEIST), Branch Laboratory-Itanagar, Naharlagun 791 110, Arunachal Pradesh, India |
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| Keywords | Endangered medicinal plants Symbiotic associations Plant associated bacteria Paris polyphylla Plant growth-promoting activities Phenotypic characterization |
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| SubjectTerms | Actinobacteria alpha-Proteobacteria bacterial communities coculture Endangered medicinal plants endophytes Firmicutes gamma-Proteobacteria genes growth promotion medicinal plants Micractinium microalgae Paris polyphylla Phenotypic characterization phosphates photosynthesis Plant associated bacteria plant growth Plant growth-promoting activities secondary metabolites siderophores soil ecology solubilization Symbiotic associations |
| Title | A comprehensive characterization of culturable endophytic bacteria of Paris polyphylla and their potential role in microalgal growth in co-culture |
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