Network Pharmacology-based Approaches Capture Essence of Chinese Herbal Medicines

Traditional Chinese Medicine(TCM), a crucial component of the current medical system, has been extensively used in clinical practice due to its valuable therapeutic efficacy, and its potentials as an important source of new pharmacophores. TCM is characterized by holistic theory, which emphasizes ma...

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Vydáno v:Chinese herbal medicines Ročník 8; číslo 2; s. 107 - 116
Hlavní autoři: Zhang, Yan-qiong, Mao, Xia, Guo, Qiu-yan, Lin, Na, Li, Shao
Médium: Journal Article
Jazyk:angličtina
Vydáno: Elsevier B.V 01.04.2016
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ISSN:1674-6384, 2589-3610
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Abstract Traditional Chinese Medicine(TCM), a crucial component of the current medical system, has been extensively used in clinical practice due to its valuable therapeutic efficacy, and its potentials as an important source of new pharmacophores. TCM is characterized by holistic theory, which emphasizes maintaining the balance of the patient's whole body using herbal formulae(fangji in Chinese) composed of mixtures of herbs with multiple bioactive ingredients. Because of the complex nature of these formulae, it is necessary to develop systematic methods to identify their bioactive ingredients and to clarify their mechanisms of action. With the rapid progress in bioinformatics, systems biology, and polypharmacology, "network pharmacology", which shifts the "one target, one drug" paradigm to the "network target, multi-component" strategy, has attracted the attention because it can not only reveal the underlying complex interactions between a herbal formula and cellular proteins but detect the influence of their interactions on the function and behavior of the system. Growing evidence shows that the network pharmacology strategy can be a powerful approach to modern research on TCM. The present paper focuses on the basis of network pharmacology and the recent progress in its methodology, illustrates its utility in screening bioactive ingredients and elucidating the mechanisms of action of TCM herbal formulae, analyzes its limitations and problems, and discusses its development direction and application prospects.
AbstractList Traditional Chinese Medicine (TCM), a crucial component of the current medical system, has been extensively used in clinical practice due to its valuable therapeutic efficacy, and its potentials as an important source of new pharmacophores. TCM is characterized by holistic theory, which emphasizes maintaining the balance of the patient's whole body using herbal formulae (fangji in Chinese) composed of mixtures of herbs with multiple bioactive ingredients. Because of the complex nature of these formulae, it is necessary to develop systematic methods to identify their bioactive ingredients and to clarify their mechanisms of action. With the rapid progress in bioinformatics, systems biology, and polypharmacology, “network pharmacology”, which shifts the “one target, one drug” paradigm to the “network target, multi-component” strategy, has attracted the attention because it can not only reveal the underlying complex interactions between a herbal formula and cellular proteins but detect the influence of their interactions on the function and behavior of the system. Growing evidence shows that the network pharmacology strategy can be a powerful approach to modern research on TCM. The present paper focuses on the basis of network pharmacology and the recent progress in its methodology, illustrates its utility in screening bioactive ingredients and elucidating the mechanisms of action of TCM herbal formulae, analyzes its limitations and problems, and discusses its development direction and application prospects.
Traditional Chinese Medicine(TCM), a crucial component of the current medical system, has been extensively used in clinical practice due to its valuable therapeutic efficacy, and its potentials as an important source of new pharmacophores. TCM is characterized by holistic theory, which emphasizes maintaining the balance of the patient's whole body using herbal formulae(fangji in Chinese) composed of mixtures of herbs with multiple bioactive ingredients. Because of the complex nature of these formulae, it is necessary to develop systematic methods to identify their bioactive ingredients and to clarify their mechanisms of action. With the rapid progress in bioinformatics, systems biology, and polypharmacology, "network pharmacology", which shifts the "one target, one drug" paradigm to the "network target, multi-component" strategy, has attracted the attention because it can not only reveal the underlying complex interactions between a herbal formula and cellular proteins but detect the influence of their interactions on the function and behavior of the system. Growing evidence shows that the network pharmacology strategy can be a powerful approach to modern research on TCM. The present paper focuses on the basis of network pharmacology and the recent progress in its methodology, illustrates its utility in screening bioactive ingredients and elucidating the mechanisms of action of TCM herbal formulae, analyzes its limitations and problems, and discusses its development direction and application prospects.
Author Yan-qiong Zhang Xia Mao Qiu-yan Guo Na Lin Shao Li
AuthorAffiliation Institute of Chinese Materia Medica, China Academy of Chinese Medical Sciences, Beijing 100700, China MOE Key Laboratory of Bioinformatics and Bioinformatics Division, TNLIST, Department of Automation, Tsinghua University,Beijing 100084, China
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Cites_doi 10.1186/1752-0509-4-47
10.1016/j.phymed.2010.10.005
10.2174/1389200211209050577
10.1093/bioinformatics/bti273
10.1007/s11192-012-0784-8
10.1155/2014/495840
10.1038/psp.2014.44
10.1016/S1359-6446(99)01443-9
10.1038/nrg2918
10.1007/s11434-010-4067-6
10.1016/j.jep.2015.03.035
10.1038/cr.2008.16
10.1186/1756-0500-4-569
10.1093/nar/gki033
10.1093/nar/gkn863
10.4155/fmc.14.8
10.1371/journal.pone.0011764
10.1093/bioinformatics/btv181
10.1155/2013/456747
10.1038/srep04154
10.1093/bioinformatics/btp595
10.1038/nbt1007-1110
10.1186/1471-2105-11-S1-S32
10.1093/bioinformatics/bts057
10.1093/bioinformatics/btl363
10.1039/C4MB00048J
10.1038/nchembio.118
10.1186/1752-0509-4-50
10.1016/j.drudis.2014.08.008
10.1093/nar/gkn892
10.1186/1752-0509-5-79
10.1093/nar/gku1003
10.1093/nar/gkq1165
10.3724/SP.J.1009.2013.00110
10.1155/2015/238495
10.1093/nar/gkp937
10.1101/gr.1239303
10.1093/nar/gks1100
10.1186/1752-0509-5-S1-S10
10.1016/j.freeradbiomed.2004.03.017
10.1093/nar/gkp983
10.1186/1479-7364-3-3-291
10.1049/iet-syb:20060032
10.1093/nar/gkm958
10.1371/journal.pone.0043918
10.1126/science.298.5594.824
10.1186/1471-2105-11-S11-S6
10.1186/1749-8546-9-24
10.1039/c3mb25506a
10.1038/msb.2008.27
10.1371/journal.pone.0104911
10.1038/srep09463
10.1093/nar/gkp878
10.1155/2015/492470
10.3736/jcim20070501
10.1093/bioinformatics/btn388
10.1016/j.cell.2011.02.016
10.1186/1471-2148-5-24
10.1093/bioinformatics/bti098
10.1039/C3MB70581A
10.1039/C3MB70507B
10.1186/1758-2946-6-13
10.1371/journal.pone.0015939
10.1186/1471-2164-10-S1-S16
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Keywords Chinese herbal medicine
molecular mechanism
network target
network pharmacology
bioactive ingredient
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Traditional Chinese Medicine(TCM), a crucial component of the current medical system, has been extensively used in clinical practice due to its valuable therapeutic efficacy, and its potentials as an important source of new pharmacophores. TCM is characterized by holistic theory, which emphasizes maintaining the balance of the patient's whole body using herbal formulae(fangji in Chinese) composed of mixtures of herbs with multiple bioactive ingredients. Because of the complex nature of these formulae, it is necessary to develop systematic methods to identify their bioactive ingredients and to clarify their mechanisms of action. With the rapid progress in bioinformatics, systems biology, and polypharmacology, "network pharmacology", which shifts the "one target, one drug" paradigm to the "network target, multi-component" strategy, has attracted the attention because it can not only reveal the underlying complex interactions between a herbal formula and cellular proteins but detect the influence of their interactions on the function and behavior of the system. Growing evidence shows that the network pharmacology strategy can be a powerful approach to modern research on TCM. The present paper focuses on the basis of network pharmacology and the recent progress in its methodology, illustrates its utility in screening bioactive ingredients and elucidating the mechanisms of action of TCM herbal formulae, analyzes its limitations and problems, and discusses its development direction and application prospects.
bioactive ingredient; Chinese herbal medicine; molecular mechanism; network pharmacology; network target
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References Keshava Prasad, Goel, Kandasamy, Keerthikumar, Kumar, Mathivanan, Telikicherla, Raju, Shafreen, Venugopal, Balakrishnan, Marimuthu, Banerjee, Somanathan, Sebastian, Rani, Ray, Harrys Kishore, Kanth, Ahmed, Kashyap, Mohmood, Ramachandra, Krishna, Rahiman, Mohan, Ranganathan, Ramabadran, Chaerkady, Pandey (bib21) 2009; 37
Li, Zhao, Zhang, Jiang, Wang, Guo, Liu, Li, Tong (bib25) 2014; 2014
Hopkins (bib18) 2007; 25
Leydesdorff, Carley, Rafols (bib24) 2013; 94
Li, Wu, Zhang (bib27) 2006; 22
Shannon, Markiel, Ozier, Baliga, Wang, Ramage, Amin, Schwikowski, Ideker (bib47) 2003; 13
Hopkins (bib19) 2008; 4
Liang, Li, Li (bib40) 2014; 10
Huang, Li (bib20) 2010; 11
Li (bib38) 2015; 350
Li, Zhang, Li (bib26) 2010; 55
Zhang, Wang, Li (bib66) 2013; 2013
Tang, Whiteman, Peng, Jenner, Yong, Halliwell (bib50) 2004; 36
Wu, Wang, Li, Zhang, Cheng, Fan (bib58) 2014; 9
Chen, Lu, Peng, Dong, Wei, Song, Zhou, Zhang, Liu, Su (bib10) 2015; 2015
An, Feng (bib1) 2015; 2015
Wang, Liu, Li, Li, Ouyang, Yu, Guo, He, Wang (bib55) 2012; 2012
Wang, Li, Shao, Li, Ai, Zhao, Fan (bib52) 2014; 10
Zhao, Guochun, Yang, Shi, Xu, Yin (bib70) 2015; 168
Li, Zhang, Zhang (bib37) 2011; 5
Vidal, Cusick, Barabási (bib51) 2011; 144
Wu, Jiang, Zhang (bib59) 2008; 4
Li (bib36) 2011; 15
Narayanan, Gersten, Subramaniam, Grama (bib44) 2011; 4
Gu, Chen, Li (bib14) 2010; 4
Ru, Li, Wang, Zhou, Li, Huang, Li, Guo, Tao, Yang, Xu, Li, Wang, Yang (bib46) 2014; 6
Aranda, Achuthan, Alam-Faruque, Armean, Bridge, Derow, Feuermann, Ghanbarian, Kerrien, Khadake, Kerssemakers, Leroy, Menden, Michaut, Montecchi-Palazzi, Neuhauser, Orchard, Perreau, Roechert, van Eijk, Hermjakob (bib2) 2010; 38
Kuhn, Szklarczyk, Franceschini, von Mering, Jensen, Bork (bib22) 2010; 38
Wishart, Knox, Guo, Cheng, Shrivastava, Tzur, Gautam, Hassanali (bib56) 2008; 36
Zu, Chen, Li (bib73) 2015; 31
Lehne, Schlitt (bib23) 2009; 3
Strohl (bib48) 2000; 5
Ludwiczuk, Saha, Kuzuhara, Asakawa (bib41) 2011; 18
Wang, Wang, Hu, Li (bib53) 2014; 3
Han (bib16) 2008; 18
Li, Xu, Wang, Yu, Wang, Yang, Xu, Tang, Li, Yang, Huang, Wang, Yang (bib39) 2012; 7
Dhal, Barman, Saha, Das (bib13) 2014; 9
Chen (bib8) 2011; 6
Ceol, Chatr Aryamontri, Licata, Peluso, Briganti, Perfetto, Castagnoli, Cesareni (bib7) 2010; 38
Szklarczyk, Franceschini, Wyder, Forslund, Heller, Huerta-Cepas, Simonovic, Roth, Santos, Tsafou, Kuhn, Bork, Jensen, von Mering (bib49) 2015; 43
Li, Zhang, Wu, Zhang, Li, Wang (bib33) 2007; 1
Hao, Li, Hong, Zhang, Tao, Tang, Liu, Zhu, Liu, Chen, Li, Cao (bib17) 2011; 39
Li, Zhang, Jiang, Wei, Zhang (bib28) 2010; 11
Zhang, Ma, Li (bib67) 2008; 24
Hamosh, Scott, Amberger, Bocchini, McKusick (bib15) 2005; 33
Yu, Chen, Li (bib65) 2012; 13
Yan, Zhang, Li (bib62) 2010; 4
Li S, Zhang N, Zhang B, 2008. Network-based identification of synergistic drug combination: China, ZL200810239284.4 [P]. 2008-10-23.
Zhang, Bai, Zhang, Liu, Guo, Sun, Wang, Wang, Jiang, Lin, Li (bib68) 2015; 5
Papadatos, Overington (bib45) 2014; 6
Zhao, Li (bib71) 2010; 5
Li S, Zhao S, 2010. Network-based identification of drug target and drug action: China, ZL201010218468.X [P]. 2010-10-21.
Wang, Gu, Yuan, Tao, Li, Li (bib54) 2013; 9
Chen, Wu, Li, Chen, Dong, Tan, Zhang, Hong, Zhu, Chai (bib11) 2014; 10
Zhao, Li (bib72) 2012; 28
Xue, Fang, Zhang, Yi, Wen, Shi (bib61) 2013; 41
Cheng, Pan, Hao, Wang, Bryant (bib12) 2014; 19
Wixon, Kell (bib57) 2000; 17
Milo, Shen-Orr, Itzkovitz, Kashtan, Chklovskii, Alon (bib43) 2002; 298
Li, Zhang (bib30) 2013; 11
Yang, Wang, Ai, Yang, Gao, Yu (bib63) 2015; 46
Yao, Hao, Li (bib64) 2011; 5
Chen, Mamidipalli, Huan (bib9) 2009; 10
Zhang, Guo, Wang, Li, Li, Xu, Liu, Song, Lin, Li, Lin (bib69) 2014; 4
Beuming, Skrabanek, Niv, Mukherjee, Weinstein (bib4) 2005; 21
Li S, Zhang B, Yuan J, 2011. A HerbBioMap database. China Software Copyright: 2011SR076502.
Brown, Otasek, Ali, McGuffin, Xie, Devani, Toch, Jurisica (bib6) 2009; 25
Barabási, Gulbahce, Loscalzo (bib3) 2011; 12
Li S, Zhang NB, Zhang B, 2009. Method of network-based identification of multicomponent synergy and compositions for use as effective component of anti-angiogenesis medicines: US, 8112230 B2[P].
Matthews, Gopinath, Gillespie, Caudy, Croft, de Bono, Garapati, Hemish, Hermjakob, Jassal, Kanapin, Lewis, Mahajan, May, Schmidt, Vastrik, Wu, Birney, Stein, D'Eustachio (bib42) 2009; 37
Brown, Jurisica (bib5) 2005; 21
Wuchty, Almaas (bib60) 2005; 5
Li (bib35) 2007; 5
Zhang (10.1016/S1674-6384(16)60018-7_bib67) 2008; 24
Hao (10.1016/S1674-6384(16)60018-7_bib17) 2011; 39
Keshava Prasad (10.1016/S1674-6384(16)60018-7_bib21) 2009; 37
Han (10.1016/S1674-6384(16)60018-7_bib16) 2008; 18
Strohl (10.1016/S1674-6384(16)60018-7_bib48) 2000; 5
Chen (10.1016/S1674-6384(16)60018-7_bib11) 2014; 10
Hamosh (10.1016/S1674-6384(16)60018-7_bib15) 2005; 33
Chen (10.1016/S1674-6384(16)60018-7_bib9) 2009; 10
Xue (10.1016/S1674-6384(16)60018-7_bib61) 2013; 41
Cheng (10.1016/S1674-6384(16)60018-7_bib12) 2014; 19
Liang (10.1016/S1674-6384(16)60018-7_bib40) 2014; 10
Matthews (10.1016/S1674-6384(16)60018-7_bib42) 2009; 37
Yang (10.1016/S1674-6384(16)60018-7_bib63) 2015; 46
Li (10.1016/S1674-6384(16)60018-7_bib28) 2010; 11
Ru (10.1016/S1674-6384(16)60018-7_bib46) 2014; 6
Chen (10.1016/S1674-6384(16)60018-7_bib10) 2015; 2015
Li (10.1016/S1674-6384(16)60018-7_bib27) 2006; 22
Beuming (10.1016/S1674-6384(16)60018-7_bib4) 2005; 21
Leydesdorff (10.1016/S1674-6384(16)60018-7_bib24) 2013; 94
Milo (10.1016/S1674-6384(16)60018-7_bib43) 2002; 298
Wu (10.1016/S1674-6384(16)60018-7_bib58) 2014; 9
Wishart (10.1016/S1674-6384(16)60018-7_bib56) 2008; 36
Yu (10.1016/S1674-6384(16)60018-7_bib65) 2012; 13
Barabási (10.1016/S1674-6384(16)60018-7_bib3) 2011; 12
Shannon (10.1016/S1674-6384(16)60018-7_bib47) 2003; 13
Chen (10.1016/S1674-6384(16)60018-7_bib8) 2011; 6
Gu (10.1016/S1674-6384(16)60018-7_bib14) 2010; 4
Zhao (10.1016/S1674-6384(16)60018-7_bib72) 2012; 28
Aranda (10.1016/S1674-6384(16)60018-7_bib2) 2010; 38
Li (10.1016/S1674-6384(16)60018-7_bib25) 2014; 2014
Li (10.1016/S1674-6384(16)60018-7_bib36) 2011; 15
Wang (10.1016/S1674-6384(16)60018-7_bib55) 2012; 2012
Papadatos (10.1016/S1674-6384(16)60018-7_bib45) 2014; 6
Li (10.1016/S1674-6384(16)60018-7_bib33) 2007; 1
Huang (10.1016/S1674-6384(16)60018-7_bib20) 2010; 11
Kuhn (10.1016/S1674-6384(16)60018-7_bib22) 2010; 38
Li (10.1016/S1674-6384(16)60018-7_bib37) 2011; 5
An (10.1016/S1674-6384(16)60018-7_bib1) 2015; 2015
10.1016/S1674-6384(16)60018-7_bib29
Dhal (10.1016/S1674-6384(16)60018-7_bib13) 2014; 9
Wang (10.1016/S1674-6384(16)60018-7_bib54) 2013; 9
Wu (10.1016/S1674-6384(16)60018-7_bib59) 2008; 4
Lehne (10.1016/S1674-6384(16)60018-7_bib23) 2009; 3
Hopkins (10.1016/S1674-6384(16)60018-7_bib19) 2008; 4
Wang (10.1016/S1674-6384(16)60018-7_bib53) 2014; 3
Li (10.1016/S1674-6384(16)60018-7_bib26) 2010; 55
Zhao (10.1016/S1674-6384(16)60018-7_bib71) 2010; 5
Tang (10.1016/S1674-6384(16)60018-7_bib50) 2004; 36
Wang (10.1016/S1674-6384(16)60018-7_bib52) 2014; 10
Hopkins (10.1016/S1674-6384(16)60018-7_bib18) 2007; 25
10.1016/S1674-6384(16)60018-7_bib31
10.1016/S1674-6384(16)60018-7_bib32
Narayanan (10.1016/S1674-6384(16)60018-7_bib44) 2011; 4
10.1016/S1674-6384(16)60018-7_bib34
Ludwiczuk (10.1016/S1674-6384(16)60018-7_bib41) 2011; 18
Szklarczyk (10.1016/S1674-6384(16)60018-7_bib49) 2015; 43
Zhang (10.1016/S1674-6384(16)60018-7_bib69) 2014; 4
Li (10.1016/S1674-6384(16)60018-7_bib35) 2007; 5
Vidal (10.1016/S1674-6384(16)60018-7_bib51) 2011; 144
Yan (10.1016/S1674-6384(16)60018-7_bib62) 2010; 4
Brown (10.1016/S1674-6384(16)60018-7_bib5) 2005; 21
Ceol (10.1016/S1674-6384(16)60018-7_bib7) 2010; 38
Wuchty (10.1016/S1674-6384(16)60018-7_bib60) 2005; 5
Li (10.1016/S1674-6384(16)60018-7_bib38) 2015; 350
Zhang (10.1016/S1674-6384(16)60018-7_bib68) 2015; 5
Li (10.1016/S1674-6384(16)60018-7_bib30) 2013; 11
Zhao (10.1016/S1674-6384(16)60018-7_bib70) 2015; 168
Wixon (10.1016/S1674-6384(16)60018-7_bib57) 2000; 17
Li (10.1016/S1674-6384(16)60018-7_bib39) 2012; 7
Zhang (10.1016/S1674-6384(16)60018-7_bib66) 2013; 2013
Yao (10.1016/S1674-6384(16)60018-7_bib64) 2011; 5
Zu (10.1016/S1674-6384(16)60018-7_bib73) 2015; 31
Brown (10.1016/S1674-6384(16)60018-7_bib6) 2009; 25
References_xml – reference: Li S, Zhang B, Yuan J, 2011. A HerbBioMap database. China Software Copyright: 2011SR076502.
– volume: 46
  start-page: 2979
  year: 2015
  end-page: 2984
  ident: bib63
  article-title: Research ideas on Tongmai Yangxin Prescription in treatment of coronary artery disease based on network pharmacology
  publication-title: Chin Tradit Herb Drugs
– volume: 15
  start-page: 2017
  year: 2011
  end-page: 2020
  ident: bib36
  article-title: Network target: A starting point for traditional Chinese medicine network pharmacology
  publication-title: China J Chin Mater Med
– volume: 25
  start-page: 1110
  year: 2007
  end-page: 1111
  ident: bib18
  article-title: Network pharmacology
  publication-title: Nat Biotechnol
– volume: 25
  start-page: 3327
  year: 2009
  end-page: 3329
  ident: bib6
  article-title: NAViGaTOR: Network analysis, visualization and graphing toronto
  publication-title: Bioinformatics
– volume: 13
  start-page: 577
  year: 2012
  end-page: 598
  ident: bib65
  article-title: Absorption, disposition, and pharmacokinetics of saponins from Chinese medicinal herbs: What do we know and what do we need to know more?
  publication-title: Curr Drug Metab
– volume: 21
  start-page: 827
  year: 2005
  end-page: 828
  ident: bib4
  article-title: PDZBase: A protein-protein interaction database for PDZdomains
  publication-title: Bioinformatics
– volume: 1
  start-page: 51
  year: 2007
  end-page: 60
  ident: bib33
  article-title: Understanding ZHENG in traditional Chinese medicine in the context of neuro-endocrine-immune network
  publication-title: IET Syst Biol
– volume: 31
  start-page: 2523
  year: 2015
  end-page: 2529
  ident: bib73
  article-title: Global optimization-based inference of chemogenomic features from drug-target interactions
  publication-title: Bioinformatics
– volume: 17
  start-page: 48
  year: 2000
  end-page: 55
  ident: bib57
  article-title: The Kyoto encyclopedia of genes and genomes-KEGG
  publication-title: Yeast
– volume: 19
  start-page: 1751
  year: 2014
  end-page: 1756
  ident: bib12
  article-title: PubChem applications in drug discovery: A bibliometric analysis
  publication-title: Drug Discov Today
– volume: 11
  start-page: 0110
  year: 2013
  end-page: 0120
  ident: bib30
  article-title: Traditional Chinese medicine network pharmacology: Theory, methodology and application
  publication-title: Chin J Nat Med
– volume: 2013
  start-page: 456747
  year: 2013
  ident: bib66
  article-title: An integrative platform of TCM network pharmacology and its application on a herbal formula, Qing-Luo-Yin
  publication-title: Evid Based Complement Alternat Med
– volume: 18
  start-page: 491
  year: 2011
  end-page: 498
  ident: bib41
  article-title: Bioactivity guided isolation of anticancer constituents from leaves of
  publication-title: Phytomedicine
– volume: 10
  start-page: 1905
  year: 2014
  end-page: 1911
  ident: bib52
  article-title: Dissecting active ingredients of Chinese medicine by content-weighted ingredient-target network
  publication-title: Mol Biosyst
– volume: 9
  start-page: 1822
  year: 2013
  end-page: 1828
  ident: bib54
  article-title: Inferring pathway crosstalk networks using gene set co-expression signatures
  publication-title: Mol Biosyst
– volume: 2015
  start-page: 238495
  year: 2015
  ident: bib10
  article-title: Dynamical regulation analysis identifies molecular mechanisms of Fuzheng-Huayu Formula against hepatitis B-caused liver cirrhosis
  publication-title: Evid Based Complement Alternat Med
– volume: 2015
  start-page: 492470
  year: 2015
  ident: bib1
  article-title: Network pharmacology-based antioxidant effect study of zhi-zi-da-huang decoction for alcoholic liver disease
  publication-title: Evid Based Complement Alternat Med
– volume: 43
  start-page: D447
  year: 2015
  end-page: D452
  ident: bib49
  article-title: STRING v10: Protein-protein interaction networks, integrated over the tree of life
  publication-title: Nucleic Acids Res
– reference: Li S, Zhao S, 2010. Network-based identification of drug target and drug action: China, ZL201010218468.X [P]. 2010-10-21.
– volume: 28
  start-page: 955
  year: 2012
  end-page: 961
  ident: bib72
  article-title: A co-module approach for elucidating drugdisease associations and revealing their molecular basis
  publication-title: Bioinformatics
– volume: 5
  start-page: 9463
  year: 2015
  ident: bib68
  article-title: Uncovering pharmacological mechanisms of Wu-tou decoction acting on rheumatoid arthritis through systems approaches: Drug-target prediction, network analysis and experimental validation
  publication-title: Sci Rep
– volume: 36
  start-page: 1575
  year: 2004
  end-page: 1587
  ident: bib50
  article-title: Characterization of antioxidant and antiglycation properties and isolation of active ingredients from traditional Chinese medicines
  publication-title: Free Radic Biol Med
– volume: 5
  start-page: 1
  year: 2007
  end-page: 5
  ident: bib35
  article-title: Framework and practice of network-based studies for Chinese herbal formula
  publication-title: Chin J Integr Med
– volume: 350
  start-page: S72
  year: 2015
  end-page: S75
  ident: bib38
  article-title: Mapping ancient remedies: Applying a network approach to traditional Chinese medicine
  publication-title: Science
– volume: 6
  start-page: e15939
  year: 2011
  ident: bib8
  article-title: TCM Database@Taiwan: The World's Largest Traditional Chinese Medicine Database for Drug Screening In Silico
  publication-title: PLoS ONE
– volume: 6
  start-page: 13
  year: 2014
  ident: bib46
  article-title: TCMSP: A database of systems pharmacology for drug discovery from herbal medicines
  publication-title: J Cheminform
– volume: 18
  start-page: 224
  year: 2008
  end-page: 237
  ident: bib16
  article-title: Understanding biological functions through molecular networks
  publication-title: Cell Res
– volume: 36
  start-page: D901
  year: 2008
  end-page: D906
  ident: bib56
  article-title: DrugBank: A knowledgebase for drugs, drug actions and drug targets
  publication-title: Nucleic Acids Res
– volume: 4
  start-page: 682
  year: 2008
  end-page: 690
  ident: bib19
  article-title: Network pharmacology: The next paradigm in drug discovery
  publication-title: Nat Chem Biol
– volume: 9
  start-page: 24
  year: 2014
  ident: bib58
  article-title: Identifying roles of “Jun-Chen-Zuo-Shi” component herbs of QiShenYiQi formula in treating acute myocardial ischemia by network pharmacology
  publication-title: Chin Med
– volume: 5
  start-page: 39
  year: 2000
  end-page: 41
  ident: bib48
  article-title: The role of natural products in a modern drug discovery program
  publication-title: Drug Discov Today
– volume: 10
  start-page: S16
  year: 2009
  ident: bib9
  article-title: HAPPI: An online database of comprehensive human annotated and predicted protein interactions
  publication-title: BMC Genomics
– volume: 10
  start-page: 3310
  year: 2014
  end-page: 3321
  ident: bib11
  article-title: Investigation of the therapeutic effectiveness of active components in Sini decoction by a comprehensive GC/LC-MS based metabolomics and network pharmacology approaches
  publication-title: Mol Biosyst
– volume: 2012
  start-page: 698531
  year: 2012
  ident: bib55
  article-title: Drug target prediction based on the herbs components: The study on the multitargets pharmacological mechanism of qishenkeli acting on the coronary heart disease
  publication-title: Evid Based Complement Alternat Med
– volume: 144
  start-page: 986
  year: 2011
  end-page: 998
  ident: bib51
  article-title: Interactome networks and human disease
  publication-title: Cell
– volume: 37
  start-page: D619
  year: 2009
  end-page: D622
  ident: bib42
  article-title: Reactome knowledgebase of human biological pathways and processes
  publication-title: Nucleic Acids Res
– volume: 11
  start-page: S32
  year: 2010
  ident: bib20
  article-title: Detection of characteristic sub pathway network for angiogenesis based on the comprehensive pathway network
  publication-title: BMC Bioinformatics
– volume: 3
  start-page: e146
  year: 2014
  ident: bib53
  article-title: Systematic analysis of new drug indications by drug-gene-disease coherent subnetworks
  publication-title: CPT Pharmacometrics Syst Pharmacol
– volume: 4
  start-page: 189
  year: 2008
  ident: bib59
  article-title: Network-based global inference of human disease genes
  publication-title: Mol Syst Biol
– volume: 168
  start-page: 1
  year: 2015
  end-page: 16
  ident: bib70
  article-title: A network pharmacology approach to determine active ingredients and rationality of herb combinations of Modified-Simiaowan for treatment of gout
  publication-title: J Ethnopharmacol
– volume: 41
  start-page: D1089
  year: 2013
  end-page: D1095
  ident: bib61
  article-title: TCMID: Traditional Chinese Medicine integrative database for herb molecular mechanism analysis
  publication-title: Nucleic Acids Res
– volume: 5
  start-page: 79
  year: 2011
  ident: bib64
  article-title: Modularity-based credible prediction of disease genes and detection of disease subtypes on the phenotype-gene heterogeneous network
  publication-title: BMC Syst Biol
– volume: 33
  start-page: D514
  year: 2005
  end-page: D517
  ident: bib15
  article-title: Online mendelian inheritance in man (OMIM), a knowledgebase of human genes and genetic disorders
  publication-title: Nucleic Acids Res
– volume: 24
  start-page: 2409
  year: 2008
  end-page: 2411
  ident: bib67
  article-title: dbNEI2.0: building multilayer network for drug-NEI-disease
  publication-title: Bioinformatics
– volume: 38
  start-page: D552
  year: 2010
  end-page: D556
  ident: bib22
  article-title: STITCH 2: An interaction network database for small molecules and proteins
  publication-title: Nucleic Acids Res
– volume: 21
  start-page: 2076
  year: 2005
  end-page: 2082
  ident: bib5
  article-title: Online predicted human interaction database
  publication-title: Bioinformatics
– volume: 22
  start-page: 2143
  year: 2006
  end-page: 2150
  ident: bib27
  article-title: Constructing biological networks through combined literature mining and microarray analysis: A LMMA approach
  publication-title: Bioinformatics
– volume: 4
  start-page: 47
  year: 2010
  ident: bib14
  article-title: Identification of responsive gene modules by network-based gene clustering and extending: Application to inflammation and angiogenesis
  publication-title: BMC Syst Biol
– volume: 4
  start-page: 4154
  year: 2014
  ident: bib69
  article-title: A systems biology-based investigation into the therapeutic effects of Gansui Banxia Tang on reversing the imbalanced network of hepatocellular carcinoma
  publication-title: Sci Rep
– volume: 4
  start-page: 50
  year: 2010
  ident: bib62
  article-title: A formal model for analyzing drug combination effects and its application in TNF-alpha-induced NFkappaB pathway
  publication-title: BMC Syst Biol
– volume: 2014
  start-page: 495840
  year: 2014
  ident: bib25
  article-title: A network pharmacology approach to determine active compounds and action mechanisms of ge-gen-qin-lian decoction for treatment of type 2 diabetes
  publication-title: Evid Based Complement Alternat Med
– volume: 10
  start-page: 1014
  year: 2014
  end-page: 1022
  ident: bib40
  article-title: A novel network pharmacology approach to analyse traditional herbal formulae: The Liu-Wei-Di-Huang pill as a case study
  publication-title: Mol Biosyst
– volume: 38
  start-page: D525
  year: 2010
  end-page: D531
  ident: bib2
  article-title: The IntAct molecular interaction database in 2010
  publication-title: Nucleic Acids Res
– volume: 7
  start-page: e43918
  year: 2012
  ident: bib39
  article-title: A system-level investigation into the mechanisms of Chinese traditional medicine: Compound Danshen Formula for cardiovascular disease treatment
  publication-title: PLoS One
– volume: 94
  start-page: 589
  year: 2013
  end-page: 593
  ident: bib24
  article-title: Global maps of science based on the new Web-of-Science categories
  publication-title: Scientometrics
– reference: Li S, Zhang NB, Zhang B, 2009. Method of network-based identification of multicomponent synergy and compositions for use as effective component of anti-angiogenesis medicines: US, 8112230 B2[P].
– volume: 298
  start-page: 824
  year: 2002
  end-page: 827
  ident: bib43
  article-title: Network motifs: Simple building blocks of complex networks
  publication-title: Science
– volume: 4
  start-page: 569
  year: 2011
  ident: bib44
  article-title: Modularity detection in protein-protein interaction networks
  publication-title: BMC Res Notes
– volume: 55
  start-page: 2974
  year: 2010
  end-page: 2980
  ident: bib26
  article-title: Ranking effects of candidate drugs on biological process by integrating network analysis and gene ontology
  publication-title: Chin Sci Bull
– volume: 11
  start-page: S6
  year: 2010
  ident: bib28
  article-title: Herb network construction and co-module analysis for uncovering the combination rule of traditional Chinese herbal formulae
  publication-title: BMC Bioinformatics
– volume: 9
  start-page: e104911
  year: 2014
  ident: bib13
  article-title: Dynamic modularity of host protein interaction networks in Salmonella Typhi infection
  publication-title: PLoS One
– volume: 3
  start-page: 291
  year: 2009
  end-page: 297
  ident: bib23
  article-title: Protein-protein interaction databases: Keeping up with growing interactomes
  publication-title: Hum Genomics
– volume: 37
  start-page: D767
  year: 2009
  end-page: D772
  ident: bib21
  article-title: Human protein reference database-2009 update
  publication-title: Nucleic Acids Res
– volume: 5
  start-page: S10
  year: 2011
  ident: bib37
  article-title: Network target for screening synergistic drug combinations with application to traditional Chinese medicine
  publication-title: BMC Syst Biol
– volume: 38
  start-page: D532
  year: 2010
  end-page: D539
  ident: bib7
  article-title: MINT, the molecular interaction database: 2009 update
  publication-title: Nucleic Acids Res
– reference: Li S, Zhang N, Zhang B, 2008. Network-based identification of synergistic drug combination: China, ZL200810239284.4 [P]. 2008-10-23.
– volume: 12
  start-page: 56
  year: 2011
  end-page: 68
  ident: bib3
  article-title: Network medicine: A network-based approach to human disease
  publication-title: Nat Rev Genet
– volume: 13
  start-page: 2498
  year: 2003
  end-page: 2504
  ident: bib47
  article-title: Cytoscape: A software environment for integrated models of biomolecular interaction networks
  publication-title: Genome Res
– volume: 39
  start-page: D1055
  year: 2011
  end-page: D1059
  ident: bib17
  article-title: HIT: Linking herbal active ingredients to targets
  publication-title: Nucleic Acids Res
– volume: 5
  start-page: 24
  year: 2005
  ident: bib60
  article-title: Evolutionary cores of domain co-occurrence networks
  publication-title: BMC Evol Biol
– volume: 5
  start-page: e11764
  year: 2010
  ident: bib71
  article-title: Network-based relating pharmacological and genomic spaces for drug target identification
  publication-title: PLoS One
– volume: 6
  start-page: 361
  year: 2014
  end-page: 364
  ident: bib45
  article-title: The ChEMBL database: A taster for medicinal chemists
  publication-title: Future Med Chem
– ident: 10.1016/S1674-6384(16)60018-7_bib34
– volume: 4
  start-page: 47
  year: 2010
  ident: 10.1016/S1674-6384(16)60018-7_bib14
  article-title: Identification of responsive gene modules by network-based gene clustering and extending: Application to inflammation and angiogenesis
  publication-title: BMC Syst Biol
  doi: 10.1186/1752-0509-4-47
– volume: 18
  start-page: 491
  issue: 6
  year: 2011
  ident: 10.1016/S1674-6384(16)60018-7_bib41
  article-title: Bioactivity guided isolation of anticancer constituents from leaves of Alnus sieboldiana (Betulaceae)
  publication-title: Phytomedicine
  doi: 10.1016/j.phymed.2010.10.005
– volume: 13
  start-page: 577
  year: 2012
  ident: 10.1016/S1674-6384(16)60018-7_bib65
  article-title: Absorption, disposition, and pharmacokinetics of saponins from Chinese medicinal herbs: What do we know and what do we need to know more?
  publication-title: Curr Drug Metab
  doi: 10.2174/1389200211209050577
– volume: 21
  start-page: 2076
  year: 2005
  ident: 10.1016/S1674-6384(16)60018-7_bib5
  article-title: Online predicted human interaction database
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bti273
– volume: 94
  start-page: 589
  issue: 2
  year: 2013
  ident: 10.1016/S1674-6384(16)60018-7_bib24
  article-title: Global maps of science based on the new Web-of-Science categories
  publication-title: Scientometrics
  doi: 10.1007/s11192-012-0784-8
– volume: 2014
  start-page: 495840
  year: 2014
  ident: 10.1016/S1674-6384(16)60018-7_bib25
  article-title: A network pharmacology approach to determine active compounds and action mechanisms of ge-gen-qin-lian decoction for treatment of type 2 diabetes
  publication-title: Evid Based Complement Alternat Med
  doi: 10.1155/2014/495840
– volume: 3
  start-page: e146
  year: 2014
  ident: 10.1016/S1674-6384(16)60018-7_bib53
  article-title: Systematic analysis of new drug indications by drug-gene-disease coherent subnetworks
  publication-title: CPT Pharmacometrics Syst Pharmacol
  doi: 10.1038/psp.2014.44
– volume: 5
  start-page: 39
  year: 2000
  ident: 10.1016/S1674-6384(16)60018-7_bib48
  article-title: The role of natural products in a modern drug discovery program
  publication-title: Drug Discov Today
  doi: 10.1016/S1359-6446(99)01443-9
– volume: 12
  start-page: 56
  year: 2011
  ident: 10.1016/S1674-6384(16)60018-7_bib3
  article-title: Network medicine: A network-based approach to human disease
  publication-title: Nat Rev Genet
  doi: 10.1038/nrg2918
– volume: 55
  start-page: 2974
  issue: 26
  year: 2010
  ident: 10.1016/S1674-6384(16)60018-7_bib26
  article-title: Ranking effects of candidate drugs on biological process by integrating network analysis and gene ontology
  publication-title: Chin Sci Bull
  doi: 10.1007/s11434-010-4067-6
– volume: 15
  start-page: 2017
  year: 2011
  ident: 10.1016/S1674-6384(16)60018-7_bib36
  article-title: Network target: A starting point for traditional Chinese medicine network pharmacology
  publication-title: China J Chin Mater Med
– volume: 168
  start-page: 1
  year: 2015
  ident: 10.1016/S1674-6384(16)60018-7_bib70
  article-title: A network pharmacology approach to determine active ingredients and rationality of herb combinations of Modified-Simiaowan for treatment of gout
  publication-title: J Ethnopharmacol
  doi: 10.1016/j.jep.2015.03.035
– volume: 18
  start-page: 224
  year: 2008
  ident: 10.1016/S1674-6384(16)60018-7_bib16
  article-title: Understanding biological functions through molecular networks
  publication-title: Cell Res
  doi: 10.1038/cr.2008.16
– volume: 4
  start-page: 569
  year: 2011
  ident: 10.1016/S1674-6384(16)60018-7_bib44
  article-title: Modularity detection in protein-protein interaction networks
  publication-title: BMC Res Notes
  doi: 10.1186/1756-0500-4-569
– volume: 33
  start-page: D514
  issue: Database issue
  year: 2005
  ident: 10.1016/S1674-6384(16)60018-7_bib15
  article-title: Online mendelian inheritance in man (OMIM), a knowledgebase of human genes and genetic disorders
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gki033
– volume: 37
  start-page: D619
  year: 2009
  ident: 10.1016/S1674-6384(16)60018-7_bib42
  article-title: Reactome knowledgebase of human biological pathways and processes
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkn863
– volume: 6
  start-page: 361
  issue: 4
  year: 2014
  ident: 10.1016/S1674-6384(16)60018-7_bib45
  article-title: The ChEMBL database: A taster for medicinal chemists
  publication-title: Future Med Chem
  doi: 10.4155/fmc.14.8
– volume: 5
  start-page: e11764
  issue: 7
  year: 2010
  ident: 10.1016/S1674-6384(16)60018-7_bib71
  article-title: Network-based relating pharmacological and genomic spaces for drug target identification
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0011764
– volume: 31
  start-page: 2523
  year: 2015
  ident: 10.1016/S1674-6384(16)60018-7_bib73
  article-title: Global optimization-based inference of chemogenomic features from drug-target interactions
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btv181
– volume: 2013
  start-page: 456747
  year: 2013
  ident: 10.1016/S1674-6384(16)60018-7_bib66
  article-title: An integrative platform of TCM network pharmacology and its application on a herbal formula, Qing-Luo-Yin
  publication-title: Evid Based Complement Alternat Med
  doi: 10.1155/2013/456747
– volume: 4
  start-page: 4154
  year: 2014
  ident: 10.1016/S1674-6384(16)60018-7_bib69
  article-title: A systems biology-based investigation into the therapeutic effects of Gansui Banxia Tang on reversing the imbalanced network of hepatocellular carcinoma
  publication-title: Sci Rep
  doi: 10.1038/srep04154
– volume: 25
  start-page: 3327
  issue: 24
  year: 2009
  ident: 10.1016/S1674-6384(16)60018-7_bib6
  article-title: NAViGaTOR: Network analysis, visualization and graphing toronto
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btp595
– volume: 25
  start-page: 1110
  year: 2007
  ident: 10.1016/S1674-6384(16)60018-7_bib18
  article-title: Network pharmacology
  publication-title: Nat Biotechnol
  doi: 10.1038/nbt1007-1110
– volume: 11
  start-page: S32
  issue: S1
  year: 2010
  ident: 10.1016/S1674-6384(16)60018-7_bib20
  article-title: Detection of characteristic sub pathway network for angiogenesis based on the comprehensive pathway network
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-11-S1-S32
– volume: 28
  start-page: 955
  year: 2012
  ident: 10.1016/S1674-6384(16)60018-7_bib72
  article-title: A co-module approach for elucidating drugdisease associations and revealing their molecular basis
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bts057
– volume: 22
  start-page: 2143
  issue: 17
  year: 2006
  ident: 10.1016/S1674-6384(16)60018-7_bib27
  article-title: Constructing biological networks through combined literature mining and microarray analysis: A LMMA approach
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btl363
– volume: 10
  start-page: 3310
  issue: 12
  year: 2014
  ident: 10.1016/S1674-6384(16)60018-7_bib11
  article-title: Investigation of the therapeutic effectiveness of active components in Sini decoction by a comprehensive GC/LC-MS based metabolomics and network pharmacology approaches
  publication-title: Mol Biosyst
  doi: 10.1039/C4MB00048J
– volume: 4
  start-page: 682
  year: 2008
  ident: 10.1016/S1674-6384(16)60018-7_bib19
  article-title: Network pharmacology: The next paradigm in drug discovery
  publication-title: Nat Chem Biol
  doi: 10.1038/nchembio.118
– volume: 4
  start-page: 50
  year: 2010
  ident: 10.1016/S1674-6384(16)60018-7_bib62
  article-title: A formal model for analyzing drug combination effects and its application in TNF-alpha-induced NFkappaB pathway
  publication-title: BMC Syst Biol
  doi: 10.1186/1752-0509-4-50
– volume: 19
  start-page: 1751
  issue: 11
  year: 2014
  ident: 10.1016/S1674-6384(16)60018-7_bib12
  article-title: PubChem applications in drug discovery: A bibliometric analysis
  publication-title: Drug Discov Today
  doi: 10.1016/j.drudis.2014.08.008
– volume: 37
  start-page: D767
  year: 2009
  ident: 10.1016/S1674-6384(16)60018-7_bib21
  article-title: Human protein reference database-2009 update
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkn892
– volume: 5
  start-page: 79
  year: 2011
  ident: 10.1016/S1674-6384(16)60018-7_bib64
  article-title: Modularity-based credible prediction of disease genes and detection of disease subtypes on the phenotype-gene heterogeneous network
  publication-title: BMC Syst Biol
  doi: 10.1186/1752-0509-5-79
– volume: 43
  start-page: D447
  issue: Database issue
  year: 2015
  ident: 10.1016/S1674-6384(16)60018-7_bib49
  article-title: STRING v10: Protein-protein interaction networks, integrated over the tree of life
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gku1003
– volume: 39
  start-page: D1055
  year: 2011
  ident: 10.1016/S1674-6384(16)60018-7_bib17
  article-title: HIT: Linking herbal active ingredients to targets
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkq1165
– volume: 11
  start-page: 0110
  issue: 2
  year: 2013
  ident: 10.1016/S1674-6384(16)60018-7_bib30
  article-title: Traditional Chinese medicine network pharmacology: Theory, methodology and application
  publication-title: Chin J Nat Med
  doi: 10.3724/SP.J.1009.2013.00110
– volume: 2015
  start-page: 238495
  year: 2015
  ident: 10.1016/S1674-6384(16)60018-7_bib10
  article-title: Dynamical regulation analysis identifies molecular mechanisms of Fuzheng-Huayu Formula against hepatitis B-caused liver cirrhosis
  publication-title: Evid Based Complement Alternat Med
  doi: 10.1155/2015/238495
– volume: 38
  start-page: D552
  issue: Database issue
  year: 2010
  ident: 10.1016/S1674-6384(16)60018-7_bib22
  article-title: STITCH 2: An interaction network database for small molecules and proteins
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkp937
– ident: 10.1016/S1674-6384(16)60018-7_bib32
– volume: 13
  start-page: 2498
  issue: 11
  year: 2003
  ident: 10.1016/S1674-6384(16)60018-7_bib47
  article-title: Cytoscape: A software environment for integrated models of biomolecular interaction networks
  publication-title: Genome Res
  doi: 10.1101/gr.1239303
– volume: 41
  start-page: D1089
  issue: Database issue
  year: 2013
  ident: 10.1016/S1674-6384(16)60018-7_bib61
  article-title: TCMID: Traditional Chinese Medicine integrative database for herb molecular mechanism analysis
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gks1100
– volume: 5
  start-page: S10
  issue: Suppl 1
  year: 2011
  ident: 10.1016/S1674-6384(16)60018-7_bib37
  article-title: Network target for screening synergistic drug combinations with application to traditional Chinese medicine
  publication-title: BMC Syst Biol
  doi: 10.1186/1752-0509-5-S1-S10
– volume: 17
  start-page: 48
  issue: 1
  year: 2000
  ident: 10.1016/S1674-6384(16)60018-7_bib57
  article-title: The Kyoto encyclopedia of genes and genomes-KEGG
  publication-title: Yeast
– volume: 36
  start-page: 1575
  issue: 12
  year: 2004
  ident: 10.1016/S1674-6384(16)60018-7_bib50
  article-title: Characterization of antioxidant and antiglycation properties and isolation of active ingredients from traditional Chinese medicines
  publication-title: Free Radic Biol Med
  doi: 10.1016/j.freeradbiomed.2004.03.017
– volume: 38
  start-page: D532
  year: 2010
  ident: 10.1016/S1674-6384(16)60018-7_bib7
  article-title: MINT, the molecular interaction database: 2009 update
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkp983
– volume: 3
  start-page: 291
  year: 2009
  ident: 10.1016/S1674-6384(16)60018-7_bib23
  article-title: Protein-protein interaction databases: Keeping up with growing interactomes
  publication-title: Hum Genomics
  doi: 10.1186/1479-7364-3-3-291
– volume: 1
  start-page: 51
  issue: 1
  year: 2007
  ident: 10.1016/S1674-6384(16)60018-7_bib33
  article-title: Understanding ZHENG in traditional Chinese medicine in the context of neuro-endocrine-immune network
  publication-title: IET Syst Biol
  doi: 10.1049/iet-syb:20060032
– volume: 36
  start-page: D901
  issue: Database issue
  year: 2008
  ident: 10.1016/S1674-6384(16)60018-7_bib56
  article-title: DrugBank: A knowledgebase for drugs, drug actions and drug targets
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkm958
– volume: 350
  start-page: S72
  issue: 6262
  year: 2015
  ident: 10.1016/S1674-6384(16)60018-7_bib38
  article-title: Mapping ancient remedies: Applying a network approach to traditional Chinese medicine
  publication-title: Science
– volume: 7
  start-page: e43918
  issue: 9
  year: 2012
  ident: 10.1016/S1674-6384(16)60018-7_bib39
  article-title: A system-level investigation into the mechanisms of Chinese traditional medicine: Compound Danshen Formula for cardiovascular disease treatment
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0043918
– volume: 298
  start-page: 824
  year: 2002
  ident: 10.1016/S1674-6384(16)60018-7_bib43
  article-title: Network motifs: Simple building blocks of complex networks
  publication-title: Science
  doi: 10.1126/science.298.5594.824
– volume: 11
  start-page: S6
  issue: S11
  year: 2010
  ident: 10.1016/S1674-6384(16)60018-7_bib28
  article-title: Herb network construction and co-module analysis for uncovering the combination rule of traditional Chinese herbal formulae
  publication-title: BMC Bioinformatics
  doi: 10.1186/1471-2105-11-S11-S6
– volume: 2012
  start-page: 698531
  year: 2012
  ident: 10.1016/S1674-6384(16)60018-7_bib55
  article-title: Drug target prediction based on the herbs components: The study on the multitargets pharmacological mechanism of qishenkeli acting on the coronary heart disease
  publication-title: Evid Based Complement Alternat Med
– volume: 9
  start-page: 24
  year: 2014
  ident: 10.1016/S1674-6384(16)60018-7_bib58
  article-title: Identifying roles of “Jun-Chen-Zuo-Shi” component herbs of QiShenYiQi formula in treating acute myocardial ischemia by network pharmacology
  publication-title: Chin Med
  doi: 10.1186/1749-8546-9-24
– volume: 9
  start-page: 1822
  year: 2013
  ident: 10.1016/S1674-6384(16)60018-7_bib54
  article-title: Inferring pathway crosstalk networks using gene set co-expression signatures
  publication-title: Mol Biosyst
  doi: 10.1039/c3mb25506a
– volume: 4
  start-page: 189
  year: 2008
  ident: 10.1016/S1674-6384(16)60018-7_bib59
  article-title: Network-based global inference of human disease genes
  publication-title: Mol Syst Biol
  doi: 10.1038/msb.2008.27
– volume: 9
  start-page: e104911
  year: 2014
  ident: 10.1016/S1674-6384(16)60018-7_bib13
  article-title: Dynamic modularity of host protein interaction networks in Salmonella Typhi infection
  publication-title: PLoS One
  doi: 10.1371/journal.pone.0104911
– volume: 5
  start-page: 9463
  year: 2015
  ident: 10.1016/S1674-6384(16)60018-7_bib68
  article-title: Uncovering pharmacological mechanisms of Wu-tou decoction acting on rheumatoid arthritis through systems approaches: Drug-target prediction, network analysis and experimental validation
  publication-title: Sci Rep
  doi: 10.1038/srep09463
– volume: 38
  start-page: D525
  year: 2010
  ident: 10.1016/S1674-6384(16)60018-7_bib2
  article-title: The IntAct molecular interaction database in 2010
  publication-title: Nucleic Acids Res
  doi: 10.1093/nar/gkp878
– volume: 2015
  start-page: 492470
  year: 2015
  ident: 10.1016/S1674-6384(16)60018-7_bib1
  article-title: Network pharmacology-based antioxidant effect study of zhi-zi-da-huang decoction for alcoholic liver disease
  publication-title: Evid Based Complement Alternat Med
  doi: 10.1155/2015/492470
– ident: 10.1016/S1674-6384(16)60018-7_bib31
– volume: 5
  start-page: 1
  issue: 5
  year: 2007
  ident: 10.1016/S1674-6384(16)60018-7_bib35
  article-title: Framework and practice of network-based studies for Chinese herbal formula
  publication-title: Chin J Integr Med
  doi: 10.3736/jcim20070501
– volume: 24
  start-page: 2409
  issue: 20
  year: 2008
  ident: 10.1016/S1674-6384(16)60018-7_bib67
  article-title: dbNEI2.0: building multilayer network for drug-NEI-disease
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/btn388
– volume: 144
  start-page: 986
  year: 2011
  ident: 10.1016/S1674-6384(16)60018-7_bib51
  article-title: Interactome networks and human disease
  publication-title: Cell
  doi: 10.1016/j.cell.2011.02.016
– volume: 5
  start-page: 24
  year: 2005
  ident: 10.1016/S1674-6384(16)60018-7_bib60
  article-title: Evolutionary cores of domain co-occurrence networks
  publication-title: BMC Evol Biol
  doi: 10.1186/1471-2148-5-24
– volume: 21
  start-page: 827
  year: 2005
  ident: 10.1016/S1674-6384(16)60018-7_bib4
  article-title: PDZBase: A protein-protein interaction database for PDZdomains
  publication-title: Bioinformatics
  doi: 10.1093/bioinformatics/bti098
– volume: 10
  start-page: 1905
  issue: 7
  year: 2014
  ident: 10.1016/S1674-6384(16)60018-7_bib52
  article-title: Dissecting active ingredients of Chinese medicine by content-weighted ingredient-target network
  publication-title: Mol Biosyst
  doi: 10.1039/C3MB70581A
– ident: 10.1016/S1674-6384(16)60018-7_bib29
– volume: 10
  start-page: 1014
  issue: 5
  year: 2014
  ident: 10.1016/S1674-6384(16)60018-7_bib40
  article-title: A novel network pharmacology approach to analyse traditional herbal formulae: The Liu-Wei-Di-Huang pill as a case study
  publication-title: Mol Biosyst
  doi: 10.1039/C3MB70507B
– volume: 6
  start-page: 13
  year: 2014
  ident: 10.1016/S1674-6384(16)60018-7_bib46
  article-title: TCMSP: A database of systems pharmacology for drug discovery from herbal medicines
  publication-title: J Cheminform
  doi: 10.1186/1758-2946-6-13
– volume: 6
  start-page: e15939
  year: 2011
  ident: 10.1016/S1674-6384(16)60018-7_bib8
  article-title: TCM Database@Taiwan: The World's Largest Traditional Chinese Medicine Database for Drug Screening In Silico
  publication-title: PLoS ONE
  doi: 10.1371/journal.pone.0015939
– volume: 10
  start-page: S16
  issue: Suppl 1
  year: 2009
  ident: 10.1016/S1674-6384(16)60018-7_bib9
  article-title: HAPPI: An online database of comprehensive human annotated and predicted protein interactions
  publication-title: BMC Genomics
  doi: 10.1186/1471-2164-10-S1-S16
– volume: 46
  start-page: 2979
  issue: 20
  year: 2015
  ident: 10.1016/S1674-6384(16)60018-7_bib63
  article-title: Research ideas on Tongmai Yangxin Prescription in treatment of coronary artery disease based on network pharmacology
  publication-title: Chin Tradit Herb Drugs
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Snippet Traditional Chinese Medicine(TCM), a crucial component of the current medical system, has been extensively used in clinical practice due to its valuable...
Traditional Chinese Medicine (TCM), a crucial component of the current medical system, has been extensively used in clinical practice due to its valuable...
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chongqing
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SubjectTerms bioactive ingredient
Chinese herbal medicine
molecular mechanism
network pharmacology
network target
中草药配方
中药方剂
医疗系统
捕捉
生物活性成分
组成部分
网络
药理学
Title Network Pharmacology-based Approaches Capture Essence of Chinese Herbal Medicines
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