Small nucleolar RNAs and their genes in vertebrates
Genes of box C/D small nucleolar RNAs (snoRNAs) were searched for in the genomes of members of all classes of vertebrates that do not belong to placental mammals. A tendency for an increase in the number of copies of snoRNA genes was observed in such vertebrates. This trend was most pronounced in an...
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| Vydáno v: | Russian journal of genetics Ročník 46; číslo 9; s. 1052 - 1054 |
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| Hlavní autoři: | , |
| Médium: | Journal Article |
| Jazyk: | angličtina |
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Dordrecht
Dordrecht : SP MAIK Nauka/Interperiodica
01.09.2010
SP MAIK Nauka/Interperiodica |
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| ISSN: | 1022-7954, 1608-3369 |
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| Abstract | Genes of box C/D small nucleolar RNAs (snoRNAs) were searched for in the genomes of members of all classes of vertebrates that do not belong to placental mammals. A tendency for an increase in the number of copies of snoRNA genes was observed in such vertebrates. This trend was most pronounced in anamnia (amphibians and fish). Box C mutations were found in 14 snoRNAs in all gene copies among all species studied. The role of the described events is discussed. |
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| AbstractList | Genes of box C/D small nucleolar RNAs (snoRNAs) were searched for in the genomes of members of all classes of vertebrates that do not belong to placental mammals. A tendency for an increase in the number of copies of snoRNA genes was observed in such vertebrates. This trend was most pronounced in anamnia (amphibians and fish). Box C mutations were found in 14 snoRNAs in all gene copies among all species studied. The role of the described events is discussed. |
| Author | Kramerov, D. A Makarova, J. A |
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| Cites_doi | 10.1261/rna.845808 10.1016/j.ygeno.2009.02.003 10.1016/S0079-6603(08)60629-7 10.1093/nar/gkj002 10.1016/S0092-8674(00)81308-2 10.1128/MCB.22.23.8342-8352.2002 10.1093/nar/gkl828 10.1016/S0968-0004(02)02109-6 10.1134/S1022795407020019 10.1134/S1022795407020093 |
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| Keywords | Host Gene snoRNA Gene Vertebrate Genome Multicopy Gene Placental Mammal |
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| References | Makarova, Kramerov (CR4) 2007; 43 Decatur, Fournier (CR3) 2002; 27 Gregory, Nicol, Tamm (CR7) 2007; 35 Lestrade, Weber (CR6) 2006; 34 Esguerra, Warringer, Blomberg (CR9) 2008; 14 Kiss-Laszlo, Henry, Bachellerie (CR2) 1996; 85 Maden (CR1) 1990; 39 Makarova, Kramerov (CR5) 2009; 94 Watkins, Dickmanns, Luhrmann (CR8) 2002; 22 T.R. Gregory (9288_CR7) 2007; 35 Z. Kiss-Laszlo (9288_CR2) 1996; 85 N.J. Watkins (9288_CR8) 2002; 22 J. Esguerra (9288_CR9) 2008; 14 Yu.A. Makarova (9288_CR4) 2007; 43 J.A. Makarova (9288_CR5) 2009; 94 L. Lestrade (9288_CR6) 2006; 34 B.E. Maden (9288_CR1) 1990; 39 W.A. Decatur (9288_CR3) 2002; 27 |
| References_xml | – volume: 14 start-page: 649 year: 2008 end-page: 656 ident: CR9 article-title: Functional Importance of Individual rRNA 2′-O-Ribose Methylations Revealed by High-Resolution Phenotyping publication-title: RNA doi: 10.1261/rna.845808 – volume: 94 start-page: 11 year: 2009 end-page: 19 ident: CR5 article-title: Analysis of C/D Box snoRNA Genes in Vertebrates: The Number of Copies Decreases in Placental Mammals publication-title: Genomics doi: 10.1016/j.ygeno.2009.02.003 – volume: 39 start-page: 241 year: 1990 end-page: 303 ident: CR1 article-title: The Numerous Modified Nucleotides in Eukaryotic Ribosomal RNA publication-title: Prog. Nucleic Acid Res. Mol. Biol. doi: 10.1016/S0079-6603(08)60629-7 – volume: 34 start-page: 158 year: 2006 end-page: 162 ident: CR6 article-title: snoRNA-LBME-db, a Comprehensive Database of Human H/ACA and C/D Box snoRNAs publication-title: Nucl. Acids Res. doi: 10.1093/nar/gkj002 – volume: 85 start-page: 1077 year: 1996 end-page: 1088 ident: CR2 article-title: Site-Specific Ribose Methylation of Preribosomal RNA: A Novel Function for Small Nucleolar RNAs publication-title: Cell doi: 10.1016/S0092-8674(00)81308-2 – volume: 22 start-page: 8342 year: 2002 end-page: 8352 ident: CR8 article-title: Conserved Stem II of the Box C/D Motif Is Essential for Nucleolar Localization and Is Required, along with the 15.5K Protein, for the Hierarchical Assembly of the Box C/D snoRNA publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.22.23.8342-8352.2002 – volume: 35 start-page: 332 year: 2007 end-page: 338 ident: CR7 article-title: Eukaryotic Genome Size Databases publication-title: Nucl. Acids Res. doi: 10.1093/nar/gkl828 – volume: 27 start-page: 344 year: 2002 end-page: 351 ident: CR3 article-title: rRNA Modifications and Ribosome Function publication-title: Trends Biochem. Sci. doi: 10.1016/S0968-0004(02)02109-6 – volume: 43 start-page: 149 issue: 2 year: 2007 end-page: 158 ident: CR4 article-title: Small Nucleolar RNA Genes publication-title: Russ. J. Genet. doi: 10.1134/S1022795407020019 – volume: 43 start-page: 149 issue: 2 year: 2007 ident: 9288_CR4 publication-title: Russ. J. Genet. doi: 10.1134/S1022795407020093 – volume: 35 start-page: 332 year: 2007 ident: 9288_CR7 publication-title: Nucl. Acids Res. doi: 10.1093/nar/gkl828 – volume: 34 start-page: 158 year: 2006 ident: 9288_CR6 publication-title: Nucl. Acids Res. doi: 10.1093/nar/gkj002 – volume: 39 start-page: 241 year: 1990 ident: 9288_CR1 publication-title: Prog. Nucleic Acid Res. Mol. Biol. doi: 10.1016/S0079-6603(08)60629-7 – volume: 94 start-page: 11 year: 2009 ident: 9288_CR5 publication-title: Genomics doi: 10.1016/j.ygeno.2009.02.003 – volume: 85 start-page: 1077 year: 1996 ident: 9288_CR2 publication-title: Cell doi: 10.1016/S0092-8674(00)81308-2 – volume: 27 start-page: 344 year: 2002 ident: 9288_CR3 publication-title: Trends Biochem. Sci. doi: 10.1016/S0968-0004(02)02109-6 – volume: 22 start-page: 8342 year: 2002 ident: 9288_CR8 publication-title: Mol. Cell. Biol. doi: 10.1128/MCB.22.23.8342-8352.2002 – volume: 14 start-page: 649 year: 2008 ident: 9288_CR9 publication-title: RNA doi: 10.1261/rna.845808 |
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| Title | Small nucleolar RNAs and their genes in vertebrates |
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