Molecular and genetic characterization of the allelic variants of Du215, Du281, Du323, and Du47G microsatellite loci in parthenogenetic lizard Darevskia armeniaca (Lacertidae)

A key issue in the study of unisexual (parthenogenetic) vertebrate species is the determination of their genetic and clonal diversity. In pursuing this aim, various markers of nuclear and mitochondrial genomes can be used. The most effective genetic markers include microsatellite DNA, characterized...

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Veröffentlicht in:	Russian journal of genetics Jg. 53; H. 4; S. 472 - 482
Hauptverfasser:	Girnyk, A. E., Vergun, A. A., Omelchenko, A. V., Petrosyan, V. G., Korchagin, V. I., Ryskov, A. P.
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	Moscow Pleiades Publishing 01.04.2017
Schlagworte:	alleles Animal Genetics Animal Genetics and Genomics Biomedical and Life Sciences Biomedicine DNA genetic distance genetic markers haplotypes heterozygosity Human Genetics inheritance (genetics) Lacertidae lizards loci Microbial Genetics and Genomics microsatellite repeats mitochondrial genome mutation nuclear genome parthenogenesis phylogeny polymerase chain reaction microsatellites parthenogenesis population genetic parameters allele polymorphism phylogenetic relationships unisexual and bisexual lizards of the genus
ISSN:	1022-7954, 1608-3369
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Abstract	A key issue in the study of unisexual (parthenogenetic) vertebrate species is the determination of their genetic and clonal diversity. In pursuing this aim, various markers of nuclear and mitochondrial genomes can be used. The most effective genetic markers include microsatellite DNA, characterized by high variability. The development and characterization of such markers is a necessary step in the genetic studies of parthenogenetic species. In the present study, using locus-specific PCR, for the first time, an analysis of allelic polymorphism of four microsatellite loci is performed in the populations of parthenogenetic species Darevskia armeniaca . In the studied populations, allelic variants of each locus are identified, and the nucleotide sequences of each allele are determined. It is demonstrated that allele differences are associated with the variation in the structure of microsatellite clusters and single nucleotide substitutions at fixed distances in flanking DNA regions. Structural allele variations form haplotype markers that are specific to each allele and are inherited from their parental bisexual species. It is established which of the parental alleles of each locus were inherited by the parthenogenetic species. The characteristics of the distribution and frequency of the alleles of microsatellite loci in the populations of D. armeniaca determining specific features of each population are obtained. The observed heterozygosity of the populations at the studied loci and the mutation rates in genome regions, as well as Nei’s genetic distances between the studied populations, are determined, and the phylogenetic relationships between them are established.
AbstractList	A key issue in the study of unisexual (parthenogenetic) vertebrate species is the determination of their genetic and clonal diversity. In pursuing this aim, various markers of nuclear and mitochondrial genomes can be used. The most effective genetic markers include microsatellite DNA, characterized by high variability. The development and characterization of such markers is a necessary step in the genetic studies of parthenogenetic species. In the present study, using locus-specific PCR, for the first time, an analysis of allelic polymorphism of four microsatellite loci is performed in the populations of parthenogenetic species Darevskia armeniaca . In the studied populations, allelic variants of each locus are identified, and the nucleotide sequences of each allele are determined. It is demonstrated that allele differences are associated with the variation in the structure of microsatellite clusters and single nucleotide substitutions at fixed distances in flanking DNA regions. Structural allele variations form haplotype markers that are specific to each allele and are inherited from their parental bisexual species. It is established which of the parental alleles of each locus were inherited by the parthenogenetic species. The characteristics of the distribution and frequency of the alleles of microsatellite loci in the populations of D. armeniaca determining specific features of each population are obtained. The observed heterozygosity of the populations at the studied loci and the mutation rates in genome regions, as well as Nei’s genetic distances between the studied populations, are determined, and the phylogenetic relationships between them are established. A key issue in the study of unisexual (parthenogenetic) vertebrate species is the determination of their genetic and clonal diversity. In pursuing this aim, various markers of nuclear and mitochondrial genomes can be used. The most effective genetic markers include microsatellite DNA, characterized by high variability. The development and characterization of such markers is a necessary step in the genetic studies of parthenogenetic species. In the present study, using locus-specific PCR, for the first time, an analysis of allelic polymorphism of four microsatellite loci is performed in the populations of parthenogenetic species Darevskia armeniaca. In the studied populations, allelic variants of each locus are identified, and the nucleotide sequences of each allele are determined. It is demonstrated that allele differences are associated with the variation in the structure of microsatellite clusters and single nucleotide substitutions at fixed distances in flanking DNA regions. Structural allele variations form haplotype markers that are specific to each allele and are inherited from their parental bisexual species. It is established which of the parental alleles of each locus were inherited by the parthenogenetic species. The characteristics of the distribution and frequency of the alleles of microsatellite loci in the populations of D. armeniaca determining specific features of each population are obtained. The observed heterozygosity of the populations at the studied loci and the mutation rates in genome regions, as well as Nei’s genetic distances between the studied populations, are determined, and the phylogenetic relationships between them are established.
Author	Petrosyan, V. G. Vergun, A. A. Korchagin, V. I. Omelchenko, A. V. Ryskov, A. P. Girnyk, A. E.
Author_xml	– sequence: 1 givenname: A. E. surname: Girnyk fullname: Girnyk, A. E. email: nasstenochka@mail.ru organization: Institute of Gene Biology, Russian Academy of Sciences – sequence: 2 givenname: A. A. surname: Vergun fullname: Vergun, A. A. organization: Institute of Gene Biology, Russian Academy of Sciences, Department of Biochemistry, Molecular Biology, and Genetics, Moscow State Pedagogical University – sequence: 3 givenname: A. V. surname: Omelchenko fullname: Omelchenko, A. V. organization: Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences – sequence: 4 givenname: V. G. surname: Petrosyan fullname: Petrosyan, V. G. organization: Severtsov Institute of Ecology and Evolution, Russian Academy of Sciences – sequence: 5 givenname: V. I. surname: Korchagin fullname: Korchagin, V. I. organization: Institute of Gene Biology, Russian Academy of Sciences – sequence: 6 givenname: A. P. surname: Ryskov fullname: Ryskov, A. P. organization: Institute of Gene Biology, Russian Academy of Sciences
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Cites_doi	10.1093/molbev/mst197 10.1073/pnas.91.8.3166 10.1016/j.gene.2006.11.020 10.1643/0045-8511(2000)000[0432:DOTCBG]2.0.CO;2 10.1021/bi9601013 10.1111/j.1365-294X.2006.02898.x 10.1023/A:1015189921578 10.1139/g95-141 10.1093/hmg/2.8.1123 10.2307/2409813 10.1038/365274a0 10.1371/journal.pone.0002730 10.2108/zsj.31.14 10.1016/S1937-6448(08)01407-X 10.1093/nar/20.2.211 10.1111/j.1096-3642.2000.tb02200.x 10.1074/jbc.271.6.2875 10.1371/journal.pone.0091674 10.1023/A:1018392603062 10.1007/s12686-011-9485-5 10.1017/S0016672300012994 10.1007/s10709-006-0003-8 10.1007/BF00128773 10.1007/s12686-012-9645-2 10.1016/j.bse.2015.07.039 10.1093/genetics/144.1.389
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Keywords	microsatellites parthenogenesis population genetic parameters allele polymorphism phylogenetic relationships unisexual and bisexual lizards of the genus
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Snippet	A key issue in the study of unisexual (parthenogenetic) vertebrate species is the determination of their genetic and clonal diversity. In pursuing this aim,...
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SubjectTerms	alleles Animal Genetics Animal Genetics and Genomics Biomedical and Life Sciences Biomedicine DNA genetic distance genetic markers haplotypes heterozygosity Human Genetics inheritance (genetics) Lacertidae lizards loci Microbial Genetics and Genomics microsatellite repeats mitochondrial genome mutation nuclear genome parthenogenesis phylogeny polymerase chain reaction
Title	Molecular and genetic characterization of the allelic variants of Du215, Du281, Du323, and Du47G microsatellite loci in parthenogenetic lizard Darevskia armeniaca (Lacertidae)
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