An ontology-based framework for bioinformatics workflows

The proliferation of bioinformatics activities brings new challenges - how to understand and organise these resources, how to exchange and reuse successful experimental procedures, and to provide interoperability among data and tools. This paper describes an effort toward these directions. It is bas...

Celý popis

Uložené v:
Podrobná bibliografia
Vydané v:International journal of bioinformatics research and applications Ročník 3; číslo 3; s. 268
Hlavní autori: Digiampietri, Luciano A, Perez-Alcazar, Jose de J, Medeiros, Claudia Bauzer
Médium: Journal Article
Jazyk:English
Vydavateľské údaje: Switzerland 2007
Predmet:
Artificial Intelligence
Computational Biology
Computer Systems
Decision Support Techniques
Genomics - statistics & numerical data
Internet
Software
ISSN:1744-5485
On-line prístup:Zistit podrobnosti o prístupe
Tagy: Pridať tag
Žiadne tagy, Buďte prvý, kto otaguje tento záznam!
Abstract The proliferation of bioinformatics activities brings new challenges - how to understand and organise these resources, how to exchange and reuse successful experimental procedures, and to provide interoperability among data and tools. This paper describes an effort toward these directions. It is based on combining research on ontology management, AI and scientific workflows to design, reuse and annotate bioinformatics experiments. The resulting framework supports automatic or interactive composition of tasks based on AI planning techniques and takes advantage of ontologies to support the specification and annotation of bioinformatics workflows. We validate our proposal with a prototype running on real data.
AbstractList The proliferation of bioinformatics activities brings new challenges - how to understand and organise these resources, how to exchange and reuse successful experimental procedures, and to provide interoperability among data and tools. This paper describes an effort toward these directions. It is based on combining research on ontology management, AI and scientific workflows to design, reuse and annotate bioinformatics experiments. The resulting framework supports automatic or interactive composition of tasks based on AI planning techniques and takes advantage of ontologies to support the specification and annotation of bioinformatics workflows. We validate our proposal with a prototype running on real data.The proliferation of bioinformatics activities brings new challenges - how to understand and organise these resources, how to exchange and reuse successful experimental procedures, and to provide interoperability among data and tools. This paper describes an effort toward these directions. It is based on combining research on ontology management, AI and scientific workflows to design, reuse and annotate bioinformatics experiments. The resulting framework supports automatic or interactive composition of tasks based on AI planning techniques and takes advantage of ontologies to support the specification and annotation of bioinformatics workflows. We validate our proposal with a prototype running on real data.
The proliferation of bioinformatics activities brings new challenges - how to understand and organise these resources, how to exchange and reuse successful experimental procedures, and to provide interoperability among data and tools. This paper describes an effort toward these directions. It is based on combining research on ontology management, AI and scientific workflows to design, reuse and annotate bioinformatics experiments. The resulting framework supports automatic or interactive composition of tasks based on AI planning techniques and takes advantage of ontologies to support the specification and annotation of bioinformatics workflows. We validate our proposal with a prototype running on real data.
Author Perez-Alcazar, Jose de J
Medeiros, Claudia Bauzer
Digiampietri, Luciano A
Author_xml – sequence: 1
  givenname: Luciano A
  surname: Digiampietri
  fullname: Digiampietri, Luciano A
  email: luciano@ic.unicamp.br
  organization: Institute of Computing, University of Campinas, CP 6176, 13084-971, Campinas, SP, Brazil. luciano@ic.unicamp.br
– sequence: 2
  givenname: Jose de J
  surname: Perez-Alcazar
  fullname: Perez-Alcazar, Jose de J
– sequence: 3
  givenname: Claudia Bauzer
  surname: Medeiros
  fullname: Medeiros, Claudia Bauzer
BackLink https://www.ncbi.nlm.nih.gov/pubmed/18048192$$D View this record in MEDLINE/PubMed
BookMark eNo1T0tPwzAYy2GIPeAHcEE9cWv58mqSY5l4DE1CQnCukjRBhbYZSadp_54ixsW2bMuSl2g2hMEhdIWhwBzY7eb57rUqCIAoYDKAztACC8ZyziSfo2VKnwCsJIyfozmWwCRWZIFkNWRhGEMXPo650ck1mY-6d4cQvzIfYmba0A6T6PXY2pT9-r4Lh3SBzrzukrs88Qq9P9y_rZ_y7cvjZl1tc0uxHPNGmxKM1c5owBMY5oRW1JVUGAYcUyKtoJoJRqix3irPPZ8iTahS2FKyQjd_u7sYvvcujXXfJuu6Tg8u7FNdKsCYUZiK16fi3vSuqXex7XU81v9fyQ-Ij1bv
ContentType Journal Article
DBID CGR
CUY
CVF
ECM
EIF
NPM
7X8
DOI 10.1504/IJBRA.2007.015003
DatabaseName Medline
MEDLINE
MEDLINE (Ovid)
MEDLINE
MEDLINE
PubMed
MEDLINE - Academic
DatabaseTitle MEDLINE
Medline Complete
MEDLINE with Full Text
PubMed
MEDLINE (Ovid)
MEDLINE - Academic
DatabaseTitleList MEDLINE - Academic
MEDLINE
Database_xml – sequence: 1
  dbid: NPM
  name: PubMed
  url: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed
  sourceTypes: Index Database
– sequence: 2
  dbid: 7X8
  name: MEDLINE - Academic
  url: https://search.proquest.com/medline
  sourceTypes: Aggregation Database
DeliveryMethod no_fulltext_linktorsrc
Discipline Biology
ExternalDocumentID 18048192
Genre Research Support, Non-U.S. Gov't
Journal Article
GroupedDBID ---
0R~
29J
4.4
53G
5GY
ABJNI
ACGFS
ACIWK
ACPRK
AFRAH
ALMA_UNASSIGNED_HOLDINGS
ALSBL
CGR
CS3
CUY
CVF
DU5
EBS
ECM
EIF
EJD
F5P
H13
HZ~
MET
MIE
NPM
O9-
P2P
RTD
7X8
ID FETCH-LOGICAL-c318t-dab60bcaeba01ebab4e7a93e637b4051328c73a47423bcfc9f5f57b4a23991c32
IEDL.DBID 7X8
ISSN 1744-5485
IngestDate Fri Jul 11 16:43:12 EDT 2025
Sat Sep 28 08:37:13 EDT 2024
IsPeerReviewed true
IsScholarly true
Issue 3
Language English
LinkModel DirectLink
MergedId FETCHMERGED-LOGICAL-c318t-dab60bcaeba01ebab4e7a93e637b4051328c73a47423bcfc9f5f57b4a23991c32
Notes ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
PMID 18048192
PQID 69011430
PQPubID 23479
ParticipantIDs proquest_miscellaneous_69011430
pubmed_primary_18048192
PublicationCentury 2000
PublicationDate 2007-00-00
PublicationDateYYYYMMDD 2007-01-01
PublicationDate_xml – year: 2007
  text: 2007-00-00
PublicationDecade 2000
PublicationPlace Switzerland
PublicationPlace_xml – name: Switzerland
PublicationTitle International journal of bioinformatics research and applications
PublicationTitleAlternate Int J Bioinform Res Appl
PublicationYear 2007
SSID ssj0046245
Score 1.67263
SecondaryResourceType review_article
Snippet The proliferation of bioinformatics activities brings new challenges - how to understand and organise these resources, how to exchange and reuse successful...
SourceID proquest
pubmed
SourceType Aggregation Database
Index Database
StartPage 268
SubjectTerms Artificial Intelligence
Computational Biology
Computer Systems
Decision Support Techniques
Genomics - statistics & numerical data
Internet
Software
Title An ontology-based framework for bioinformatics workflows
URI https://www.ncbi.nlm.nih.gov/pubmed/18048192
https://www.proquest.com/docview/69011430
Volume 3
hasFullText
inHoldings 1
isFullTextHit
isPrint
link http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwpV1LS8NAEB6qVfDi-1GfOXhdmjab3QQEqWJRwVJEobewmexCQZJqq-K_dyYPb-LBy5JsCITJzM43M7vzAZyjUugrNCLkreLSSS1i8mJ0pRQ5tMBkTpZkE3o0iiaTeNyCi-YsDG-rbNbEcqHOCuQceZeJk8i3-5ezV8GcUVxbrQk0lqAdEJBhndaTnxqCVP2SopggtxSEy8O6phn6snt3f_U4qPsX0kTJmPULviz9zHDjf1-4Ces1vvQGlUJsQcvm27BaMU5-7UA0yD3uWMB3gj1Y5rlme5ZH-NVLp0XdS5X7N3s8716Kz_kuPA9vnq5vRU2eIJDMdCEykyo_RWNT4_doSKXVJg6sCnRKII2C0Ah1YCRXalN0GLvQhfTI8GHXHgb9PVjOi9wegGd1JgOKjCg6RLL3yDgKG0NErpBKdFkHzhqBJKScXHEwuS3e50kjkg7sVzJNZlUPjaQXcaOauH_457tHsFblUzntcQxtR2ZpT2AFPxbT-dtp-c9pHI0fvgFDZrVU
linkProvider ProQuest
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=An+ontology-based+framework+for+bioinformatics+workflows&rft.jtitle=International+journal+of+bioinformatics+research+and+applications&rft.au=Digiampietri%2C+Luciano+A&rft.au=Perez-Alcazar%2C+Jose+de+J&rft.au=Medeiros%2C+Claudia+Bauzer&rft.date=2007-01-01&rft.issn=1744-5485&rft.volume=3&rft.issue=3&rft.spage=268&rft_id=info:doi/10.1504%2FIJBRA.2007.015003&rft.externalDBID=NO_FULL_TEXT
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=1744-5485&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=1744-5485&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=1744-5485&client=summon