Opposite nucleotide usage biases in different parts of the Corynebacterium diphtheriae spaC gene

In this work we described a bacterial open reading frame with two different directions of nucleotide usage biases in its two parts. The level of GC-content in third codon positions (3GC) is equal to 40.17 ± 0.22% during the most of the length of Corynebacterium diphtheriae spaC gene. However, in the...

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Vydané v:	International journal of bioinformatics research and applications Ročník 11; číslo 4; s. 347
Hlavní autori:	Khrustalev, Vladislav Victorovich, Barkovsky, Eugene Victorovich, Kolodkina, Valentina Leonidovna, Khrustaleva, Tatyana Aleksandrovna
Médium:	Journal Article
Jazyk:	English
Vydavateľské údaje:	Switzerland 2015
Predmet:	Bacterial Proteins - genetics Base Composition - genetics Codon - genetics Corynebacterium diphtheriae - genetics Genes, Bacterial - genetics Genomics Membrane Proteins - genetics Mutation Open Reading Frames pili intragenic promoters autonomous transcription genomic islands nucleotide usage bias nucleotide mutations spaC genes adhesion Corynebacterium diphtheriae Corynebacterium ulcerans transcription-associated mutational pressure intragenic terminators terminator prediction pathogenicity islands bioinformatics asymmetric mutational pressure promoter prediction
ISSN:	1744-5485
On-line prístup:	Zistit podrobnosti o prístupe
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