Gain-loss-duplication models for copy number evolution on a phylogeny: Exact algorithms for computing the likelihood and its gradient

Gene gain-loss-duplication models are commonly based on continuous-time birth–death processes. Employed in a phylogenetic context, such models have been increasingly popular in studies of gene content evolution across multiple genomes. While the applications are becoming more varied and demanding, b...

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Bibliographic Details

Published in:	Theoretical population biology Vol. 145; pp. 80 - 94
Main Author:	Csűrös, Miklós
Format:	Journal Article
Language:	English
Published:	United States Elsevier Inc 01.06.2022
Subjects:	Birth–death-immigration process Gene content Genome evolution Maximum likelihood Phyletic profile Phyletic profile Maximum likelihood Gene content Genome evolution Birth–death-immigration process
ISSN:	0040-5809, 1096-0325, 1096-0325
Online Access:	Get full text
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