Distributed RMI-DBG model: Scalable iterative de Bruijn graph algorithm for short read genome assembly problem

Genome assembly is the computational process of merging short parts of DNA into larger sequences called contigs. Rapid growth of high-throughput genome sequencing technologies and production of large amount of data have led to the genome assembly paradigms shift from shared memory to distributed mem...

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Bibliographic Details

Published in:	Expert systems with applications Vol. 233; p. 120859
Main Authors:	Zare Hosseini, Zeinab, Kolahdouz Rahimi, Shekoufeh, Forouzan, Esmaeil, Baraani, Ahmad
Format:	Journal Article
Language:	English
Published:	Elsevier Ltd 15.12.2023
Subjects:	Distributed graph assembly Giraph Iterative de Bruijn Graph (DBG) algorithm Short read genome assembly Spark Short read genome assembly Distributed graph assembly Spark Giraph Iterative de Bruijn Graph (DBG) algorithm
ISSN:	0957-4174, 1873-6793
Online Access:	Get full text
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