mSNP: A Massively Parallel Algorithm for Large-Scale SNP Detection

Single Nucleotide Polymorphism (SNP) detection is a fundamental procedure of whole genome analysis. SOAPsnp, a classic tool for detection, would take more than one week to analyze one typical human genome, which limits the efficiency of downstream analyses. In this paper, we present mSNP, an optimiz...

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Veröffentlicht in:	IEEE transactions on parallel and distributed systems Jg. 29; H. 11; S. 2557 - 2567
Hauptverfasser:	Cui, Yingbo, Peng, Shaoliang, Lu, Yutong, Zhu, Xiaoqian, Wang, Bingqiang, Wu, Chengkun, Liao, Xiangke
Format:	Journal Article
Sprache:	Englisch
Veröffentlicht:	New York IEEE 01.11.2018 The Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Schlagworte:	Bioinformatics Computer memory Computing time Coprocessors Data structures Genomes Genomics Graphics processing units MIC Microsoft Windows Polymorphism SNP detection SOAPsnp sparse matrix vectorization Xeon Phi
ISSN:	1045-9219, 1558-2183
Online-Zugang:	Volltext
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