A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks

We introduce an alternative formulation of the exact stochastic simulation algorithm (SSA) for sampling trajectories of the chemical master equation for a well-stirred system of coupled chemical reactions. Our formulation is based on factored-out, partial reaction propensities. This novel exact SSA,...

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Vydané v:	The Journal of chemical physics Ročník 130; číslo 24; s. 244104
Hlavní autori:	Ramaswamy, Rajesh, González-Segredo, Nélido, Sbalzarini, Ivo F
Médium:	Journal Article
Jazyk:	English
Vydavateľské údaje:	United States 28.06.2009
Predmet:	Algorithms Colloids - chemistry Computer Simulation Escherichia coli - genetics Escherichia coli - metabolism Escherichia coli Proteins - genetics Escherichia coli Proteins - metabolism Heat-Shock Proteins - genetics Heat-Shock Proteins - metabolism Models, Biological Models, Chemical Stochastic Processes
ISSN:	1089-7690
On-line prístup:	Zistit podrobnosti o prístupe
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