A new class of highly efficient exact stochastic simulation algorithms for chemical reaction networks

We introduce an alternative formulation of the exact stochastic simulation algorithm (SSA) for sampling trajectories of the chemical master equation for a well-stirred system of coupled chemical reactions. Our formulation is based on factored-out, partial reaction propensities. This novel exact SSA,...

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Bibliographic Details

Published in:	The Journal of chemical physics Vol. 130; no. 24; p. 244104
Main Authors:	Ramaswamy, Rajesh, González-Segredo, Nélido, Sbalzarini, Ivo F
Format:	Journal Article
Language:	English
Published:	United States 28.06.2009
Subjects:	Algorithms Colloids - chemistry Computer Simulation Escherichia coli - genetics Escherichia coli - metabolism Escherichia coli Proteins - genetics Escherichia coli Proteins - metabolism Heat-Shock Proteins - genetics Heat-Shock Proteins - metabolism Models, Biological Models, Chemical Stochastic Processes
ISSN:	1089-7690
Online Access:	Get more information
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