DeepUTF: Locating transcription factor binding sites via interpretable dual-channel encoder-decoder structure

•A novel method (DeepUTF) to predict transcription factor binding sites (TFBSs).•DeepUTF captures other relevant patterns in the transcriptional regulatory network.•The feature learning process of the model is interpretable.•Excellent model predictions compared to TF-DNA complexes in the PDB.•DeepUT...

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Bibliographic Details

Published in:	Pattern recognition Vol. 161; p. 111279
Main Authors:	Ding, Pengju, Wang, Jianxin, He, Shiyue, Gao, Xin, Yu, Xu, Yu, Bin
Format:	Journal Article
Language:	English
Published:	Elsevier Ltd 01.05.2025
Subjects:	Improved encoder-decoder Interpretability Swin transformer Transcription factor binding sites Swin transformer Transcription factor binding sites Improved encoder-decoder Interpretability
ISSN:	0031-3203
Online Access:	Get full text
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