Achievable Rates of Nanopore-Based DNA Storage

This paper studies achievable rates of nanopore-based DNA storage when nanopore signals are decoded using a tractable channel model that does not rely on a basecalling algorithm. Specifically, the noisy nanopore channel (NNC) with the Scrappie pore model generates average output levels via i.i.d. ge...

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Bibliographic Details
Published in:	IEEE journal on selected areas in information theory Vol. 6; pp. 261 - 269
Main Authors:	McBain, Brendon, Viterbo, Emanuele
Format:	Journal Article
Language:	English
Published:	Piscataway IEEE 2025 The Institute of Electrical and Electronics Engineers, Inc. (IEEE)
Subjects:	Accuracy Algorithms Backtracking Channel models Datasets Decoding DNA Encoding information rates mathematical models Message passing nanobioscience nanopores Noise Noise measurement Random noise Sequential analysis Vectors
ISSN:	2641-8770, 2641-8770
Online Access:	Get full text
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