New Parallel and Distributed Tools and Algorithms for Life Sciences
Computational methods are nowadays ubiquitous in the field of bioinformatics and biomedicine. Besides established fields like molecular dynamics, genomics or neuroimaging, new emerging methods rely heavily on large scale computational resources. These new methods need to manage Tbytes or Pbytes of d...
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| Published in: | Future generation computer systems Vol. 112; pp. 1174 - 1176 |
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| Main Authors: | , |
| Format: | Journal Article |
| Language: | English |
| Published: |
Elsevier B.V
01.11.2020
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| Subjects: | |
| ISSN: | 0167-739X, 1872-7115 |
| Online Access: | Get full text |
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| Abstract | Computational methods are nowadays ubiquitous in the field of bioinformatics and biomedicine. Besides established fields like molecular dynamics, genomics or neuroimaging, new emerging methods rely heavily on large scale computational resources. These new methods need to manage Tbytes or Pbytes of data with large-scale structural and functional relationships, TFlops or PFlops of computing power for simulating highly complex models, or many-task processes and workflows for processing and analyzing data. Today, many areas in Life Sciences are facing these challenges. This special issue contains papers showing existing solutions and latest developments in Life Sciences and Computing Sciences to collaboratively explore new ideas and approaches to successfully apply distributed IT-systems in translational research, clinical intervention, and decision-making. |
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| AbstractList | Computational methods are nowadays ubiquitous in the field of bioinformatics and biomedicine. Besides established fields like molecular dynamics, genomics or neuroimaging, new emerging methods rely heavily on large scale computational resources. These new methods need to manage Tbytes or Pbytes of data with large-scale structural and functional relationships, TFlops or PFlops of computing power for simulating highly complex models, or many-task processes and workflows for processing and analyzing data. Today, many areas in Life Sciences are facing these challenges. This special issue contains papers showing existing solutions and latest developments in Life Sciences and Computing Sciences to collaboratively explore new ideas and approaches to successfully apply distributed IT-systems in translational research, clinical intervention, and decision-making. |
| Author | Carretero, Jesus Krefting, Dagmar |
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| Cites_doi | 10.1016/j.future.2019.09.057 10.1016/j.future.2019.08.031 10.1016/j.future.2020.04.012 10.1016/j.future.2020.05.039 10.1016/j.future.2020.01.030 10.1016/j.future.2019.07.026 10.1016/j.future.2020.05.007 |
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| References | Blanquer (b2) 2020 Expósito, González-Domínguez, Touriño (b6) 2019 Tarkaneh, Moser (b7) 2019; 101 Hanussek, Bartusch, Krüger (b4) 2020; 102 Jansen (b1) 2020; 112 Ocaña (b3) 2020; 107 González-Domínguez, Expósito, Bolón-Canedo (b10) 2020; 102 Garcia-Blas, Del Rio, Carretero, Garcia (b8) 2020; 112 Lei, Wang, Mei (b9) 2020 Ahmed (b5) 2019 Ahmed (10.1016/j.future.2020.07.058_b5) 2019 González-Domínguez (10.1016/j.future.2020.07.058_b10) 2020; 102 Jansen (10.1016/j.future.2020.07.058_b1) 2020; 112 Hanussek (10.1016/j.future.2020.07.058_b4) 2020; 102 Blanquer (10.1016/j.future.2020.07.058_b2) 2020 Garcia-Blas (10.1016/j.future.2020.07.058_b8) 2020; 112 Ocaña (10.1016/j.future.2020.07.058_b3) 2020; 107 Expósito (10.1016/j.future.2020.07.058_b6) 2019 Tarkaneh (10.1016/j.future.2020.07.058_b7) 2019; 101 Lei (10.1016/j.future.2020.07.058_b9) 2020 |
| References_xml | – year: 2019 ident: b5 article-title: Heart disease identification from patients’ social posts, machine learning solution on Spark publication-title: Future Gener. Comput. Syst. – year: 2020 ident: b2 article-title: Federated and secure cloud services for building medical image classifiers on an intercontinental infrastructure publication-title: Future Gener. Comput. Syst. – volume: 101 start-page: 921 year: 2019 end-page: 939 ident: b7 article-title: An improved differential evolution algorithm using archimedean spiral and neighborhood search based mutation approach for cluster analysis publication-title: Future Gener. Comput. Syst. – volume: 112 start-page: 467 year: 2020 end-page: 477 ident: b8 article-title: Towards enhanced MRI by using a multiple back end programming framework publication-title: Future Gener. Comput. Syst. – year: 2020 ident: b9 article-title: Efficient parallel algorithm for detecting influential nodes in large biological networks on the graphics processing unit publication-title: Future Gener. Comput. Syst. – year: 2019 ident: b6 article-title: Smusket: Spark-based DNA error correction on distributed-memory systems publication-title: Future Gener. Comput. Syst. – volume: 107 start-page: 192 year: 2020 end-page: 214 ident: b3 article-title: Bioinfoportal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network publication-title: Future Gener. Comput. Syst. – volume: 102 start-page: 426 year: 2020 end-page: 436 ident: b10 article-title: CUDA-JMI: Acceleration of feature selection on heterogeneous systems publication-title: Future Gener. Comput. Syst. – volume: 112 start-page: 209 year: 2020 end-page: 227 ident: b1 article-title: Curious containers: A framework for computational reproducibility in life sciences with support for deep learning applications publication-title: Future Gener. Comput. Syst. – volume: 102 start-page: 1016 year: 2020 end-page: 1026 ident: b4 article-title: BOOTABLE: Bioinformatics benchmark tool suite for applications and hardware publication-title: Future Gener. Comput. Syst. – volume: 102 start-page: 1016 year: 2020 ident: 10.1016/j.future.2020.07.058_b4 article-title: BOOTABLE: Bioinformatics benchmark tool suite for applications and hardware publication-title: Future Gener. Comput. Syst. doi: 10.1016/j.future.2019.09.057 – volume: 102 start-page: 426 year: 2020 ident: 10.1016/j.future.2020.07.058_b10 article-title: CUDA-JMI: Acceleration of feature selection on heterogeneous systems publication-title: Future Gener. Comput. Syst. doi: 10.1016/j.future.2019.08.031 – year: 2020 ident: 10.1016/j.future.2020.07.058_b2 article-title: Federated and secure cloud services for building medical image classifiers on an intercontinental infrastructure publication-title: Future Gener. Comput. Syst. doi: 10.1016/j.future.2020.04.012 – year: 2019 ident: 10.1016/j.future.2020.07.058_b5 article-title: Heart disease identification from patients’ social posts, machine learning solution on Spark publication-title: Future Gener. Comput. Syst. – year: 2020 ident: 10.1016/j.future.2020.07.058_b9 article-title: Efficient parallel algorithm for detecting influential nodes in large biological networks on the graphics processing unit publication-title: Future Gener. Comput. Syst. – year: 2019 ident: 10.1016/j.future.2020.07.058_b6 article-title: Smusket: Spark-based DNA error correction on distributed-memory systems publication-title: Future Gener. Comput. Syst. – volume: 112 start-page: 467 year: 2020 ident: 10.1016/j.future.2020.07.058_b8 article-title: Towards enhanced MRI by using a multiple back end programming framework publication-title: Future Gener. Comput. Syst. doi: 10.1016/j.future.2020.05.039 – volume: 107 start-page: 192 year: 2020 ident: 10.1016/j.future.2020.07.058_b3 article-title: Bioinfoportal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network publication-title: Future Gener. Comput. Syst. doi: 10.1016/j.future.2020.01.030 – volume: 101 start-page: 921 year: 2019 ident: 10.1016/j.future.2020.07.058_b7 article-title: An improved differential evolution algorithm using archimedean spiral and neighborhood search based mutation approach for cluster analysis publication-title: Future Gener. Comput. Syst. doi: 10.1016/j.future.2019.07.026 – volume: 112 start-page: 209 year: 2020 ident: 10.1016/j.future.2020.07.058_b1 article-title: Curious containers: A framework for computational reproducibility in life sciences with support for deep learning applications publication-title: Future Gener. Comput. Syst. doi: 10.1016/j.future.2020.05.007 |
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| Title | New Parallel and Distributed Tools and Algorithms for Life Sciences |
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