New Parallel and Distributed Tools and Algorithms for Life Sciences

Computational methods are nowadays ubiquitous in the field of bioinformatics and biomedicine. Besides established fields like molecular dynamics, genomics or neuroimaging, new emerging methods rely heavily on large scale computational resources. These new methods need to manage Tbytes or Pbytes of d...

Full description

Saved in:
Bibliographic Details
Published in:Future generation computer systems Vol. 112; pp. 1174 - 1176
Main Authors: Carretero, Jesus, Krefting, Dagmar
Format: Journal Article
Language:English
Published: Elsevier B.V 01.11.2020
Subjects:
ISSN:0167-739X, 1872-7115
Online Access:Get full text
Tags: Add Tag
No Tags, Be the first to tag this record!
Abstract Computational methods are nowadays ubiquitous in the field of bioinformatics and biomedicine. Besides established fields like molecular dynamics, genomics or neuroimaging, new emerging methods rely heavily on large scale computational resources. These new methods need to manage Tbytes or Pbytes of data with large-scale structural and functional relationships, TFlops or PFlops of computing power for simulating highly complex models, or many-task processes and workflows for processing and analyzing data. Today, many areas in Life Sciences are facing these challenges. This special issue contains papers showing existing solutions and latest developments in Life Sciences and Computing Sciences to collaboratively explore new ideas and approaches to successfully apply distributed IT-systems in translational research, clinical intervention, and decision-making.
AbstractList Computational methods are nowadays ubiquitous in the field of bioinformatics and biomedicine. Besides established fields like molecular dynamics, genomics or neuroimaging, new emerging methods rely heavily on large scale computational resources. These new methods need to manage Tbytes or Pbytes of data with large-scale structural and functional relationships, TFlops or PFlops of computing power for simulating highly complex models, or many-task processes and workflows for processing and analyzing data. Today, many areas in Life Sciences are facing these challenges. This special issue contains papers showing existing solutions and latest developments in Life Sciences and Computing Sciences to collaboratively explore new ideas and approaches to successfully apply distributed IT-systems in translational research, clinical intervention, and decision-making.
Author Carretero, Jesus
Krefting, Dagmar
Author_xml – sequence: 1
  givenname: Jesus
  surname: Carretero
  fullname: Carretero, Jesus
  email: jesus.carretero@uc3m.es
  organization: Universidad Carlos III de Madrid, Spain
– sequence: 2
  givenname: Dagmar
  surname: Krefting
  fullname: Krefting, Dagmar
  email: dagmar.krefting@med.uni-goettingen.de
  organization: University Medical Center Goettingen, Germany
BookMark eNp9kF1LwzAUhoNMcJv-Ay_yB1rPadpmvRHG_IShghO8C2lyohldK0mn-O_trNdeHXg478vLM2OTtmuJsXOEFAHLi23q9v0-UJpBBinIFIrFEZviQmaJRCwmbDq8yUSK6vWEzWLcAgBKgVO2eqAv_qSDbhpquG4tv_KxD77e92T5puua-EuXzVsXfP--i9x1ga-9I_5sPLWG4ik7drqJdPZ35-zl5nqzukvWj7f3q-U6MZnAPhG11KWDHITN6yKrF1AhAYIwoAeCxsLAa0KTlUKjdlAVTgsjbelcZXMxZ_nYa0IXYyCnPoLf6fCtENRBhNqqUYQ6iFAg1SBiiF2OMRq2fXoKKo7DrQ9kemU7_3_BDwhRawg
Cites_doi 10.1016/j.future.2019.09.057
10.1016/j.future.2019.08.031
10.1016/j.future.2020.04.012
10.1016/j.future.2020.05.039
10.1016/j.future.2020.01.030
10.1016/j.future.2019.07.026
10.1016/j.future.2020.05.007
ContentType Journal Article
Copyright 2020
Copyright_xml – notice: 2020
DBID AAYXX
CITATION
DOI 10.1016/j.future.2020.07.058
DatabaseName CrossRef
DatabaseTitle CrossRef
DatabaseTitleList
DeliveryMethod fulltext_linktorsrc
Discipline Computer Science
EISSN 1872-7115
EndPage 1176
ExternalDocumentID 10_1016_j_future_2020_07_058
S0167739X2032416X
GroupedDBID --K
--M
-~X
.DC
.~1
0R~
1B1
1~.
1~5
29H
4.4
457
4G.
5GY
5VS
7-5
71M
8P~
9JN
AACTN
AAEDT
AAEDW
AAIAV
AAIKJ
AAKOC
AALRI
AAOAW
AAQFI
AAQXK
AAXUO
AAYFN
ABBOA
ABFNM
ABJNI
ABMAC
ABXDB
ABYKQ
ACDAQ
ACGFS
ACNNM
ACRLP
ACZNC
ADBBV
ADEZE
ADJOM
ADMUD
AEBSH
AEKER
AFKWA
AFTJW
AGHFR
AGUBO
AGYEJ
AHHHB
AHZHX
AIALX
AIEXJ
AIKHN
AITUG
AJBFU
AJOXV
ALMA_UNASSIGNED_HOLDINGS
AMFUW
AMRAJ
AOUOD
ASPBG
AVWKF
AXJTR
AZFZN
BKOJK
BLXMC
CS3
EBS
EFJIC
EFLBG
EJD
EO8
EO9
EP2
EP3
F5P
FDB
FEDTE
FGOYB
FIRID
FNPLU
FYGXN
G-Q
G8K
GBLVA
GBOLZ
HLZ
HVGLF
HZ~
IHE
J1W
KOM
LG9
M41
MO0
MS~
N9A
O-L
O9-
OAUVE
OZT
P-8
P-9
PC.
Q38
R2-
RIG
ROL
RPZ
SBC
SDF
SDG
SES
SEW
SPC
SPCBC
SSV
SSZ
T5K
UHS
WUQ
XPP
ZMT
~G-
9DU
AATTM
AAXKI
AAYWO
AAYXX
ABDPE
ABWVN
ACLOT
ACRPL
ADNMO
AEIPS
AFJKZ
AGQPQ
AIIUN
ANKPU
APXCP
CITATION
EFKBS
~HD
ID FETCH-LOGICAL-c231t-3b7a6f0403d4b52b8091e0103c0ad4b1cd04b5be1c263a1af095fa3c7d6ff9d43
ISICitedReferencesCount 0
ISICitedReferencesURI http://www.webofscience.com/api/gateway?GWVersion=2&SrcApp=Summon&SrcAuth=ProQuest&DestLinkType=CitingArticles&DestApp=WOS_CPL&KeyUT=000567829300010&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
ISSN 0167-739X
IngestDate Sat Nov 29 07:25:48 EST 2025
Fri Feb 23 02:49:45 EST 2024
IsDoiOpenAccess false
IsOpenAccess true
IsPeerReviewed true
IsScholarly true
Keywords Life Sciences
Cloud computing
Biomedicine
Health
Workflows
Genomics
Bioinformatics
Language English
LinkModel OpenURL
MergedId FETCHMERGED-LOGICAL-c231t-3b7a6f0403d4b52b8091e0103c0ad4b1cd04b5be1c263a1af095fa3c7d6ff9d43
OpenAccessLink http://hdl.handle.net/10016/33808
PageCount 3
ParticipantIDs crossref_primary_10_1016_j_future_2020_07_058
elsevier_sciencedirect_doi_10_1016_j_future_2020_07_058
PublicationCentury 2000
PublicationDate November 2020
2020-11-00
PublicationDateYYYYMMDD 2020-11-01
PublicationDate_xml – month: 11
  year: 2020
  text: November 2020
PublicationDecade 2020
PublicationTitle Future generation computer systems
PublicationYear 2020
Publisher Elsevier B.V
Publisher_xml – name: Elsevier B.V
References Blanquer (b2) 2020
Expósito, González-Domínguez, Touriño (b6) 2019
Tarkaneh, Moser (b7) 2019; 101
Hanussek, Bartusch, Krüger (b4) 2020; 102
Jansen (b1) 2020; 112
Ocaña (b3) 2020; 107
González-Domínguez, Expósito, Bolón-Canedo (b10) 2020; 102
Garcia-Blas, Del Rio, Carretero, Garcia (b8) 2020; 112
Lei, Wang, Mei (b9) 2020
Ahmed (b5) 2019
Ahmed (10.1016/j.future.2020.07.058_b5) 2019
González-Domínguez (10.1016/j.future.2020.07.058_b10) 2020; 102
Jansen (10.1016/j.future.2020.07.058_b1) 2020; 112
Hanussek (10.1016/j.future.2020.07.058_b4) 2020; 102
Blanquer (10.1016/j.future.2020.07.058_b2) 2020
Garcia-Blas (10.1016/j.future.2020.07.058_b8) 2020; 112
Ocaña (10.1016/j.future.2020.07.058_b3) 2020; 107
Expósito (10.1016/j.future.2020.07.058_b6) 2019
Tarkaneh (10.1016/j.future.2020.07.058_b7) 2019; 101
Lei (10.1016/j.future.2020.07.058_b9) 2020
References_xml – year: 2019
  ident: b5
  article-title: Heart disease identification from patients’ social posts, machine learning solution on Spark
  publication-title: Future Gener. Comput. Syst.
– year: 2020
  ident: b2
  article-title: Federated and secure cloud services for building medical image classifiers on an intercontinental infrastructure
  publication-title: Future Gener. Comput. Syst.
– volume: 101
  start-page: 921
  year: 2019
  end-page: 939
  ident: b7
  article-title: An improved differential evolution algorithm using archimedean spiral and neighborhood search based mutation approach for cluster analysis
  publication-title: Future Gener. Comput. Syst.
– volume: 112
  start-page: 467
  year: 2020
  end-page: 477
  ident: b8
  article-title: Towards enhanced MRI by using a multiple back end programming framework
  publication-title: Future Gener. Comput. Syst.
– year: 2020
  ident: b9
  article-title: Efficient parallel algorithm for detecting influential nodes in large biological networks on the graphics processing unit
  publication-title: Future Gener. Comput. Syst.
– year: 2019
  ident: b6
  article-title: Smusket: Spark-based DNA error correction on distributed-memory systems
  publication-title: Future Gener. Comput. Syst.
– volume: 107
  start-page: 192
  year: 2020
  end-page: 214
  ident: b3
  article-title: Bioinfoportal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network
  publication-title: Future Gener. Comput. Syst.
– volume: 102
  start-page: 426
  year: 2020
  end-page: 436
  ident: b10
  article-title: CUDA-JMI: Acceleration of feature selection on heterogeneous systems
  publication-title: Future Gener. Comput. Syst.
– volume: 112
  start-page: 209
  year: 2020
  end-page: 227
  ident: b1
  article-title: Curious containers: A framework for computational reproducibility in life sciences with support for deep learning applications
  publication-title: Future Gener. Comput. Syst.
– volume: 102
  start-page: 1016
  year: 2020
  end-page: 1026
  ident: b4
  article-title: BOOTABLE: Bioinformatics benchmark tool suite for applications and hardware
  publication-title: Future Gener. Comput. Syst.
– volume: 102
  start-page: 1016
  year: 2020
  ident: 10.1016/j.future.2020.07.058_b4
  article-title: BOOTABLE: Bioinformatics benchmark tool suite for applications and hardware
  publication-title: Future Gener. Comput. Syst.
  doi: 10.1016/j.future.2019.09.057
– volume: 102
  start-page: 426
  year: 2020
  ident: 10.1016/j.future.2020.07.058_b10
  article-title: CUDA-JMI: Acceleration of feature selection on heterogeneous systems
  publication-title: Future Gener. Comput. Syst.
  doi: 10.1016/j.future.2019.08.031
– year: 2020
  ident: 10.1016/j.future.2020.07.058_b2
  article-title: Federated and secure cloud services for building medical image classifiers on an intercontinental infrastructure
  publication-title: Future Gener. Comput. Syst.
  doi: 10.1016/j.future.2020.04.012
– year: 2019
  ident: 10.1016/j.future.2020.07.058_b5
  article-title: Heart disease identification from patients’ social posts, machine learning solution on Spark
  publication-title: Future Gener. Comput. Syst.
– year: 2020
  ident: 10.1016/j.future.2020.07.058_b9
  article-title: Efficient parallel algorithm for detecting influential nodes in large biological networks on the graphics processing unit
  publication-title: Future Gener. Comput. Syst.
– year: 2019
  ident: 10.1016/j.future.2020.07.058_b6
  article-title: Smusket: Spark-based DNA error correction on distributed-memory systems
  publication-title: Future Gener. Comput. Syst.
– volume: 112
  start-page: 467
  year: 2020
  ident: 10.1016/j.future.2020.07.058_b8
  article-title: Towards enhanced MRI by using a multiple back end programming framework
  publication-title: Future Gener. Comput. Syst.
  doi: 10.1016/j.future.2020.05.039
– volume: 107
  start-page: 192
  year: 2020
  ident: 10.1016/j.future.2020.07.058_b3
  article-title: Bioinfoportal: A scientific gateway for integrating bioinformatics applications on the Brazilian national high-performance computing network
  publication-title: Future Gener. Comput. Syst.
  doi: 10.1016/j.future.2020.01.030
– volume: 101
  start-page: 921
  year: 2019
  ident: 10.1016/j.future.2020.07.058_b7
  article-title: An improved differential evolution algorithm using archimedean spiral and neighborhood search based mutation approach for cluster analysis
  publication-title: Future Gener. Comput. Syst.
  doi: 10.1016/j.future.2019.07.026
– volume: 112
  start-page: 209
  year: 2020
  ident: 10.1016/j.future.2020.07.058_b1
  article-title: Curious containers: A framework for computational reproducibility in life sciences with support for deep learning applications
  publication-title: Future Gener. Comput. Syst.
  doi: 10.1016/j.future.2020.05.007
SSID ssj0001731
Score 2.281999
Snippet Computational methods are nowadays ubiquitous in the field of bioinformatics and biomedicine. Besides established fields like molecular dynamics, genomics or...
SourceID crossref
elsevier
SourceType Index Database
Publisher
StartPage 1174
SubjectTerms Bioinformatics
Biomedicine
Cloud computing
Genomics
Health
Life Sciences
Workflows
Title New Parallel and Distributed Tools and Algorithms for Life Sciences
URI https://dx.doi.org/10.1016/j.future.2020.07.058
Volume 112
WOSCitedRecordID wos000567829300010&url=https%3A%2F%2Fcvtisr.summon.serialssolutions.com%2F%23%21%2Fsearch%3Fho%3Df%26include.ft.matches%3Dt%26l%3Dnull%26q%3D
hasFullText 1
inHoldings 1
isFullTextHit
isPrint
journalDatabaseRights – providerCode: PRVESC
  databaseName: ScienceDirect database
  customDbUrl:
  eissn: 1872-7115
  dateEnd: 99991231
  omitProxy: false
  ssIdentifier: ssj0001731
  issn: 0167-739X
  databaseCode: AIEXJ
  dateStart: 19950201
  isFulltext: true
  titleUrlDefault: https://www.sciencedirect.com
  providerName: Elsevier
link http://cvtisr.summon.serialssolutions.com/2.0.0/link/0/eLvHCXMwtV1LT8MwDI6AceDCG_FWDlyLliY07XEaINgBITGk3ao0jwGCDrUF8fNxmrQbAiFA4lJtltpFtmt_yWx_CB0x2c0ilinYplIVMJaIIBEGXjzFhNRUh5SpmmyCX13Fo1Fy7YvYy5pOgOd5_PaWPP-rqUEGxrats78wd_tQEMBnMDpcwexw_ZHhbcXitSgsR4obA3BqZ-NaWittq2Ymj24qc-9xPCnuqzs3kAH25kY3L3o5i1jP66EjlmlZe2eRngjCT4FuQXm_rvrVrnFmoMuX6f9EkIYrT55yKsZPopg9bICdJflw2PC5C8YdSkKw5bSmxIWc4gJpzAG5E9eq2UZaXzHtYiUhjp_H5134Gn0Z093xwsOxG7JybJfl5q3G0xzWVhbe2MXYtVhmeACbo3nUCflJAgGv07s8Gw3aNE24J6v0i2_6Kuviv8-_9TVumcEiw1W07DcRuOeMv4bmdL6OVhqCDuzNuIH64Au48QUMVsczvoBrX6ilU1_A4AvY-kLzkHIT3Z6fDfsXgWfNCCRg9SqgGReRgdhMFctOwiwGRKgtm4fsCpAQqbogzzSRYUQFEQZAthFUchUZkyhGt9BCPsn1NsIRVdKEUgDKIcxoIjgVPElYGGqiqWQ7KGh0kj674ShpUzX4kDodplaHaZenoMMdxBvFpR7gOeCWgq2_vXP3z3fuoaWpI--jhap40QdoUb5W92Vx6J3iHQSHeBw
linkProvider Elsevier
openUrl ctx_ver=Z39.88-2004&ctx_enc=info%3Aofi%2Fenc%3AUTF-8&rfr_id=info%3Asid%2Fsummon.serialssolutions.com&rft_val_fmt=info%3Aofi%2Ffmt%3Akev%3Amtx%3Ajournal&rft.genre=article&rft.atitle=New+Parallel+and+Distributed+Tools+and+Algorithms+for+Life+Sciences&rft.jtitle=Future+generation+computer+systems&rft.au=Carretero%2C+Jesus&rft.au=Krefting%2C+Dagmar&rft.date=2020-11-01&rft.pub=Elsevier+B.V&rft.issn=0167-739X&rft.eissn=1872-7115&rft.volume=112&rft.spage=1174&rft.epage=1176&rft_id=info:doi/10.1016%2Fj.future.2020.07.058&rft.externalDocID=S0167739X2032416X
thumbnail_l http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/lc.gif&issn=0167-739X&client=summon
thumbnail_m http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/mc.gif&issn=0167-739X&client=summon
thumbnail_s http://covers-cdn.summon.serialssolutions.com/index.aspx?isbn=/sc.gif&issn=0167-739X&client=summon