Computational Resources for Molecular Biology 2024
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| Vydané v: | Journal of molecular biology Ročník 436; číslo 17; s. 168739 |
|---|---|
| Hlavní autori: | , , |
| Médium: | Journal Article |
| Jazyk: | English |
| Vydavateľské údaje: |
Netherlands
Elsevier Ltd
01.09.2024
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| ISSN: | 0022-2836, 1089-8638, 1089-8638 |
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| ArticleNumber | 168739 |
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| Author | Mathews, David H. Sternberg, Michael J.E. Casadio, Rita |
| Author_xml | – sequence: 1 givenname: Rita surname: Casadio fullname: Casadio, Rita email: rita.casadio@unibo.it organization: Biocomputing Group, FABIT-University of Bologna, Bologna I-40126, Italy – sequence: 2 givenname: David H. surname: Mathews fullname: Mathews, David H. email: David_Mathews@urmc.rochester.edu organization: Department of Biochemistry & Biophysics and Center for RNA Biology, University of Rochester, Rochester, NY 14642, USA – sequence: 3 givenname: Michael J.E. surname: Sternberg fullname: Sternberg, Michael J.E. email: m.sternberg@imperial.ac.uk organization: Centre for Integrative Systems Biology and Bioinformatics, Department of Life Sciences, Imperial College London, London SW7 2AZ, UK |
| BackLink | https://www.ncbi.nlm.nih.gov/pubmed/39117178$$D View this record in MEDLINE/PubMed |
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| Cites_doi | 10.1016/j.jmb.2024.168686 10.1016/j.jmb.2024.168540 10.1016/j.jmb.2024.168567 10.1016/j.jmb.2024.168558 10.1016/j.jmb.2024.168552 10.1016/j.jmb.2024.168519 10.1016/j.jmb.2024.168593 10.1016/j.jmb.2024.168548 10.1016/j.jmb.2024.168551 10.1016/j.jmb.2024.168617 10.1016/j.jmb.2024.168520 10.1016/j.jmb.2024.168531 10.1016/j.jmb.2024.168655 10.1016/j.jmb.2024.168549 10.1016/j.jmb.2024.168613 10.1016/j.jmb.2024.168571 10.1016/j.jmb.2024.168656 10.1016/j.jmb.2024.168654 10.1016/j.jmb.2024.168545 10.1016/j.jmb.2024.168494 10.1016/j.jmb.2024.168554 10.1016/j.jmb.2024.168546 10.1016/j.jmb.2024.168530 10.1016/j.jmb.2024.168437 10.1016/j.jmb.2024.168518 10.1016/j.jmb.2024.168687 10.1016/j.jmb.2024.168556 10.1016/j.jmb.2024.168605 |
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| References | Leader, Naseem, Halberg (b0030) 2024 El Kassaby, Castellanos, Gerring, Kunde-Ramamoorthy, Bult (b0020) 2024 Szikszai, Magnus, Sanghi, Kadyan, Bouatta, Rivas (b0045) 2024 Feidakis, Krivak, Hoksza, Novotny (b0105) 2024 Zhang, Xiong, Yang, Xiao (b0160) 2024 Abali, Aydin, Khokhar, Ates, Gursoy, Keskin (b0110) 2024 Combe, Graham, Kolbowski, Fischer, Rappsilber (b0120) 2024 Martin-Malpartida, Torner, Martinez, Macias (b0095) 2024 Manfredi, Savojardo, Iardukhin, Salomoni, Costantini, Martelli, Casadio (b0085) 2024 Vallat, Webb, Westbrook, Goddard, Hanke, Graziadei, Peisach, Zalevsky (b0100) 2024 Baltsavia, Oulas, Theodosiou, Lavigne, Andreakos, Mavrothalassitis, Iliopoulos (b0035) 2024 Guedes, Pereira da Silva, Galheigo, Krempser, de Magalhães, Correa Barbosa, Dardenne (b0130) 2024 Kwon, Jung, Yang, Seok (b0140) 2024 Sangaraju, Pham, Wei, Yu, Manavalan (b0075) 2024 Eickhorst, Babic, Rush-kittle, Lucya, Meisinger, Slade (b0015) 2024 Collins, Copeland, Brysbaert, Wodak, Bonvin, Kundrotas, Vakser, Lensink (b0115) 2024 Kong, Park, Im (b0145) 2024 Wang, Hu, Basu, Kurgan (b0070) 2024 Nie, Zhao, Yu, Mai, Gao, Fan, Bao, Li, Xiao (b0010) 2024 Li, Ren, Dai, Stubenrauch, Finn, Wang (b0150) 2024 Zhao, Zhang, Li, Tan, Cao, Wang, Luo, Guo, Zhang, Li (b0155) 2024 Moreau, Exner, Labesse (b0135) 2024 Waman, Bordin, Alcraft, Vickerstaff, Rauer, Chan, Sillitoe, Yamamori, Orengo (b0080) 2024 Bondarev, Uspenskaya, Leclercq, Falgarone, Zhouravleva, Kajava (b0125) 2024 McCann, Meade, Banerjee, Penev, Dean Williams, Petrov (b0060) 2024 Augustijn, Karapliafis, Joosten, Rigali, van Wezel, Medema (b0025) 2024 Chen, Wang, Coffey, Patton, Weaver, Shyr, Liu (b0040) 2024 Mittal, Turner, Mathews (b0050) 2024 Zhang, Li, Zhang, Mathews, Huang (b0055) 2024 McGuffin, Alharbi (b0090) 2024 Schroeder, Freddolino (b0005) 2024 Manfredi, Savojardo, Martelli, Casadio (b0065) 2024 Chen (10.1016/j.jmb.2024.168739_b0040) 2024 Bondarev (10.1016/j.jmb.2024.168739_b0125) 2024 Nie (10.1016/j.jmb.2024.168739_b0010) 2024 Wang (10.1016/j.jmb.2024.168739_b0070) 2024 Collins (10.1016/j.jmb.2024.168739_b0115) 2024 Zhang (10.1016/j.jmb.2024.168739_b0160) 2024 Zhang (10.1016/j.jmb.2024.168739_b0055) 2024 Waman (10.1016/j.jmb.2024.168739_b0080) 2024 Augustijn (10.1016/j.jmb.2024.168739_b0025) 2024 Mittal (10.1016/j.jmb.2024.168739_b0050) 2024 Kong (10.1016/j.jmb.2024.168739_b0145) 2024 Zhao (10.1016/j.jmb.2024.168739_b0155) 2024 Martin-Malpartida (10.1016/j.jmb.2024.168739_b0095) 2024 Abali (10.1016/j.jmb.2024.168739_b0110) 2024 Baltsavia (10.1016/j.jmb.2024.168739_b0035) 2024 Vallat (10.1016/j.jmb.2024.168739_b0100) 2024 Guedes (10.1016/j.jmb.2024.168739_b0130) 2024 Feidakis (10.1016/j.jmb.2024.168739_b0105) 2024 Combe (10.1016/j.jmb.2024.168739_b0120) 2024 Eickhorst (10.1016/j.jmb.2024.168739_b0015) 2024 Kwon (10.1016/j.jmb.2024.168739_b0140) 2024 Szikszai (10.1016/j.jmb.2024.168739_b0045) 2024 Li (10.1016/j.jmb.2024.168739_b0150) 2024 McCann (10.1016/j.jmb.2024.168739_b0060) 2024 Manfredi (10.1016/j.jmb.2024.168739_b0065) 2024 Manfredi (10.1016/j.jmb.2024.168739_b0085) 2024 Schroeder (10.1016/j.jmb.2024.168739_b0005) 2024 Moreau (10.1016/j.jmb.2024.168739_b0135) 2024 Leader (10.1016/j.jmb.2024.168739_b0030) 2024 El Kassaby (10.1016/j.jmb.2024.168739_b0020) 2024 McGuffin (10.1016/j.jmb.2024.168739_b0090) 2024 Sangaraju (10.1016/j.jmb.2024.168739_b0075) 2024 |
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Biol. doi: 10.1016/j.jmb.2024.168520 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0090 article-title: ModFOLD9: A web server for independent estimates of 3D protein model quality publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168531 – start-page: 6663 year: 2024 ident: 10.1016/j.jmb.2024.168739_b0160 article-title: 3dRNA/DNA: 3D Structure Prediction from RNA to DNA publication-title: J Mol Biol – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0010 article-title: NucMap 2.0: An updated database of genome-wide nucleosome positioning map across species publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168655 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0055 article-title: LinearAlifold: Linear-time consensus structure prediction for RNA alignments publication-title: J. Mol. Biol. – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0050 article-title: NNDB: An expanded database of nearest neighbor parameters for predicting stability of nucleic acid secondary structures publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168549 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0150 article-title: Fungtion: A server for predicting and visualizing fungal effector proteins publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168613 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0040 article-title: EVPsort: An atlas of small ncRNA profiling and sorting in extracellular vesicles and particles publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168571 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0120 article-title: xiVIEW: Visualisation of crosslinking mass spectrometry data publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168656 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0035 article-title: scRNA-Explorer: An end-user online tool for single cell RNA-seq data analysis featuring gene correlation and data filtering publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168654 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0105 article-title: AHoJ-DB: A PDB-wide assignment of apo & holo relationships based on individual protein-ligand interactions: A database of apo-holo structure pairs publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168545 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0065 article-title: E-pRSA: Embeddings improve the prediction of residue relative solvent accessibility in protein sequence publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168494 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0015 article-title: XGRm: A web server for interpreting mouse summary-level genomic data publication-title: J. Mol. Biol. – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0145 article-title: CHARMM-GUI PDB reader and manipulator: Covalent ligand modeling and simulation publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168554 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0100 article-title: IHMCIF: An extension of the PDBx/mmCIF data standard for integrative structure determination methods: IHMCIF data standard for integrative structures publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168546 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0155 article-title: Leaf senescence database v5.0: A comprehensive repository for facilitating plant senescence research publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168530 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0125 article-title: AmyloComp: A bioinformatic tool for prediction of amyloid co-aggregation publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168437 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0020 article-title: MVAR: A mouse variation registry publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168518 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0075 article-title: mACPpred 2.0: Stacked deep learning for anticancer peptide prediction with integrated spatial and probabilistic feature representations publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168687 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0060 article-title: RiboVision2: A web server for advanced visualization of ribosomal RNAs publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168556 – year: 2024 ident: 10.1016/j.jmb.2024.168739_b0070 article-title: flDPnn2: Accurate and fast predictor of intrinsic disorder in proteins publication-title: J. Mol. Biol. doi: 10.1016/j.jmb.2024.168605 |
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| SubjectTerms | Computational Biology - methods Humans Molecular Biology - methods |
| Title | Computational Resources for Molecular Biology 2024 |
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