The Microbiology Galaxy Lab: A community-driven gateway to tools, workflows, and training for reproducible and FAIR analysis of microbial data
Microbial research generates vast and complex data from diverse omics technologies, demanding innovative analytical solutions. The microGalaxy community addresses these needs with the Microbiology Lab, a user-friendly platform that integrates 290+ tool suites and 85+ curated workflows for microbial...
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| Vydané v: | bioRxiv |
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| Hlavní autori: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
| Médium: | Journal Article Paper |
| Jazyk: | English |
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Cold Spring Harbor Laboratory
26.03.2025
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| Vydanie: | 1.2 |
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| ISSN: | 2692-8205, 2692-8205 |
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| Abstract | Microbial research generates vast and complex data from diverse omics technologies, demanding innovative analytical solutions. The microGalaxy community addresses these needs with the Microbiology Lab, a user-friendly platform that integrates 290+ tool suites and 85+ curated workflows for microbial analyses, including taxonomic profiling, assembly, annotation, and functional analysis. Hosted on several public Galaxy servers (microbiology.usegalaxy.org, .eu, .org.au, .fr), it supports workflow creation & customization, sharing, and updates across public and private Galaxy servers, ensuring flexibility and reproducibility. The platform also offers 35+ tutorials, 15+ instructional videos, and structured learning pathways, empowering researchers to conduct advanced analyses. Backed by a community-driven approach, the Microbiology Galaxy Lab ensures up-to-date tools and workflows through testing and semi-automatic updates to meet global research demands. With its focus on rapid workflow prototyping and high-throughput processing, the Microbiology Galaxy Lab provides scalable resources for researchers at all expertise levels.Microbial research generates vast and complex data from diverse omics technologies, demanding innovative analytical solutions. The microGalaxy community addresses these needs with the Microbiology Lab, a user-friendly platform that integrates 290+ tool suites and 85+ curated workflows for microbial analyses, including taxonomic profiling, assembly, annotation, and functional analysis. Hosted on several public Galaxy servers (microbiology.usegalaxy.org, .eu, .org.au, .fr), it supports workflow creation & customization, sharing, and updates across public and private Galaxy servers, ensuring flexibility and reproducibility. The platform also offers 35+ tutorials, 15+ instructional videos, and structured learning pathways, empowering researchers to conduct advanced analyses. Backed by a community-driven approach, the Microbiology Galaxy Lab ensures up-to-date tools and workflows through testing and semi-automatic updates to meet global research demands. With its focus on rapid workflow prototyping and high-throughput processing, the Microbiology Galaxy Lab provides scalable resources for researchers at all expertise levels. |
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| AbstractList | Microbial research generates vast and complex data from diverse omics technologies, demanding innovative analytical solutions. The microGalaxy community addresses these needs with the Microbiology Lab, a user-friendly platform that integrates 290+ tool suites and 85+ curated workflows for microbial analyses, including taxonomic profiling, assembly, annotation, and functional analysis. Hosted on several public Galaxy servers (microbiology.usegalaxy.org, .eu, .org.au, .fr), it supports workflow creation & customization, sharing, and updates across public and private Galaxy servers, ensuring flexibility and reproducibility. The platform also offers 35+ tutorials, 15+ instructional videos, and structured learning pathways, empowering researchers to conduct advanced analyses. Backed by a community-driven approach, the Microbiology Galaxy Lab ensures up-to-date tools and workflows through testing and semi-automatic updates to meet global research demands. With its focus on rapid workflow prototyping and high-throughput processing, the Microbiology Galaxy Lab provides scalable resources for researchers at all expertise levels. Microbial research generates vast and complex data from diverse omics technologies, demanding innovative analytical solutions. The microGalaxy community addresses these needs with the Microbiology Lab, a user-friendly platform that integrates 290+ tool suites and 85+ curated workflows for microbial analyses, including taxonomic profiling, assembly, annotation, and functional analysis. Hosted on several public Galaxy servers (microbiology.usegalaxy.org, .eu, .org.au, .fr), it supports workflow creation & customization, sharing, and updates across public and private Galaxy servers, ensuring flexibility and reproducibility. The platform also offers 35+ tutorials, 15+ instructional videos, and structured learning pathways, empowering researchers to conduct advanced analyses. Backed by a community-driven approach, the Microbiology Galaxy Lab ensures up-to-date tools and workflows through testing and semi-automatic updates to meet global research demands. With its focus on rapid workflow prototyping and high-throughput processing, the Microbiology Galaxy Lab provides scalable resources for researchers at all expertise levels.Microbial research generates vast and complex data from diverse omics technologies, demanding innovative analytical solutions. The microGalaxy community addresses these needs with the Microbiology Lab, a user-friendly platform that integrates 290+ tool suites and 85+ curated workflows for microbial analyses, including taxonomic profiling, assembly, annotation, and functional analysis. Hosted on several public Galaxy servers (microbiology.usegalaxy.org, .eu, .org.au, .fr), it supports workflow creation & customization, sharing, and updates across public and private Galaxy servers, ensuring flexibility and reproducibility. The platform also offers 35+ tutorials, 15+ instructional videos, and structured learning pathways, empowering researchers to conduct advanced analyses. Backed by a community-driven approach, the Microbiology Galaxy Lab ensures up-to-date tools and workflows through testing and semi-automatic updates to meet global research demands. With its focus on rapid workflow prototyping and high-throughput processing, the Microbiology Galaxy Lab provides scalable resources for researchers at all expertise levels. |
| Author | Zierep, Paul Schatz, Michael C Vohra, Mustafa Amato, Pierre Blankenberg, Daniel Hiltemann, Saskia Oba, Asime Jagtap, Pratik Rosic, Nedeljka Siguret, Clea Nasr, Engy Mehta, Subina Do, Katherine Bernt, Matthias Pechlivanis, Nikos Momin, Saim Price, Gareth R Hyde, Cameron J Cumbo, Fabio Stubbs, Andrew Batut, Bérénice Bhardwaj, Anshu Gruening, Bjoern Schiml, Valerie Claudia Van Heusden, Peter Métris, Kimberly L Péguilhan, Raphaëlle Brites, Daniela Soranzo, Nicola Ferrari, Emanuele Griffin, Timothy J Pavloudi, Christina Psomopoulos, Fotis |
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| Cites_doi | 10.48550/ARXIV.2301.10140 10.5281/ZENODO.7542349 10.48550/ARXIV.2410.06941 10.5281/zenodo.15088383 10.1101/2024.11.18.624180 10.37044/osf.io/qjbxc 10.37044/osf.io/s7tru 10.1021/acs.jproteome.4c00848 10.1101/009944 10.1145/2110217.2110225 10.1101/2024.06.26.600753 |
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| Copyright | 2025, Posted by Cold Spring Harbor Laboratory |
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| Notes | ObjectType-Working Paper/Pre-Print-3 ObjectType-Article-1 SourceType-Scholarly Journals-1 ObjectType-Feature-2 content type line 23 Competing Interest Statement: D.Bl. has a significant financial interest in GalaxyWorks, a company that may have a commercial interest in the results of this research and technology. |
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