The stress kit: a new method based on competitive reverse transcriptase–polymerase chain reaction to quantify the expression of human αB-crystallin, Hsp27, and Hsp60

We describe a reverse transcriptase–polymerase chain reaction method for the semiquantitative detection of mRNAs encoding the human heat shock proteins αB-crystallin, Hsp27, and Hsp60. The method involves the coamplification of cellular mRNA-derived cDNA with a dilution series of a competitor fragme...

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Vydané v:Cell stress & chaperones Ročník 5; číslo 1; s. 30 - 35
Hlavní autori: Bajramović, Jeffrey J., Geutskens, Sacha B., Bsibsi, Malika, Boot, Marit, Hassankhan, Ryan, Verhulst, Karien C., van Noort, Johannes M.
Médium: Journal Article
Jazyk:English
Vydavateľské údaje: Cell Stress Society International 01.01.2000
Predmet:
Cell lines
Complementary DNA
Electrophoresis
Gels
Heat shock proteins
Messenger RNA
Neuroglia
Polymerase chain reaction
Regular s
Reverse transcriptase polymerase chain reaction
Shock heating
ISSN:1355-8145, 1466-1268
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Abstract We describe a reverse transcriptase–polymerase chain reaction method for the semiquantitative detection of mRNAs encoding the human heat shock proteins αB-crystallin, Hsp27, and Hsp60. The method involves the coamplification of cellular mRNA-derived cDNA with a dilution series of a competitor fragment (internal standard), using 1 primer pair common to both templates. Internal standards were based on cellular-derived cDNA engineered to be slightly smaller to differentiate between the target and the standard on electrophoretic separation. Initial cDNA quantitations can be corrected for possible variations during cDNA synthesis by standardizing to the levels of β-actin–encoding cDNA. We show that the coamplified templates accumulate in a parallel manner with the cellular-derived cDNA throughout both the exponential and the nonexponential phase of amplification. Furthermore, we illustrate the utility of this technique by quantifying increased expression of αB-crystallin, Hsp27, and Hsp60 mRNA in astroglioma cells on heat shock.
AbstractList We describe a reverse transcriptase-polymerase chain reaction method for the semiquantitative detection of mRNAs encoding the human heat shock proteins αB-crystallin, Hsp27, and Hsp60. The method involves the coamplification of cellular mRNA-derived cDNA with a dilution series of a competitor fragment (internal standard), using 1 primer pair common to both templates. Internal standards were based on cellular-derived cDNA engineered to be slightly smaller to differentiate between the target and the standard on electrophoretic separation. Initial cDNA quantitations can be corrected for possible variations during cDNA synthesis by standardizing to the levels of β-actin-encoding cDNA. We show that the coamplified templates accumulate in a parallel manner with the cellular-derived cDNA throughout both the exponential and the nonexponential phase of amplification. Furthermore, we illustrate the utility of this technique by quantifying increased expression of αB-crystallin, Hsp27, and Hsp60 mRNA in astroglioma cells on heat shock.
Author Hassankhan, Ryan
Verhulst, Karien C.
Geutskens, Sacha B.
Bsibsi, Malika
Bajramović, Jeffrey J.
Boot, Marit
van Noort, Johannes M.
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  givenname: Sacha B.
  surname: Geutskens
  fullname: Geutskens, Sacha B.
  organization: Division of Immunological and Infectious Diseases, TNO Prevention and Health, PO Box 2215, 2301 CE Leiden, The Netherlands
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  givenname: Malika
  surname: Bsibsi
  fullname: Bsibsi, Malika
  organization: Division of Immunological and Infectious Diseases, TNO Prevention and Health, PO Box 2215, 2301 CE Leiden, The Netherlands
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  givenname: Marit
  surname: Boot
  fullname: Boot, Marit
  organization: Division of Immunological and Infectious Diseases, TNO Prevention and Health, PO Box 2215, 2301 CE Leiden, The Netherlands
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  givenname: Ryan
  surname: Hassankhan
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  organization: Division of Immunological and Infectious Diseases, TNO Prevention and Health, PO Box 2215, 2301 CE Leiden, The Netherlands
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  givenname: Karien C.
  surname: Verhulst
  fullname: Verhulst, Karien C.
  organization: Division of Immunological and Infectious Diseases, TNO Prevention and Health, PO Box 2215, 2301 CE Leiden, The Netherlands
– sequence: 7
  givenname: Johannes M.
  surname: van Noort
  fullname: van Noort, Johannes M.
  organization: Division of Immunological and Infectious Diseases, TNO Prevention and Health, PO Box 2215, 2301 CE Leiden, The Netherlands
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Snippet We describe a reverse transcriptase–polymerase chain reaction method for the semiquantitative detection of mRNAs encoding the human heat shock proteins...
We describe a reverse transcriptase-polymerase chain reaction method for the semiquantitative detection of mRNAs encoding the human heat shock proteins...
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SubjectTerms Cell lines
Complementary DNA
Electrophoresis
Gels
Heat shock proteins
Messenger RNA
Neuroglia
Polymerase chain reaction
Regular s
Reverse transcriptase polymerase chain reaction
Shock heating
Title The stress kit: a new method based on competitive reverse transcriptase–polymerase chain reaction to quantify the expression of human αB-crystallin, Hsp27, and Hsp60
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