Gut microbiome composition predicts summer core range size in a generalist and specialist ungulate
Abstract The gut microbiome of animals varies by age, diet, and habitat, and directly influences individual health. Similarly, variation in an individual’s home range can lead to differences in feeding strategies and fitness. Ungulates (hooved mammals) exhibit species-specific microbiomes and habita...
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26.11.2020
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| Abstract | Abstract The gut microbiome of animals varies by age, diet, and habitat, and directly influences individual health. Similarly, variation in an individual’s home range can lead to differences in feeding strategies and fitness. Ungulates (hooved mammals) exhibit species-specific microbiomes and habitat use patterns: here, we combined gut microbiome and movement data to assess relationships between space use and the gut microbiome in a specialist and a generalist ungulate. We captured and GPS radiocollared 24 mountain goats (Oreamnos americanus) and 34 white-tailed deer (Odocoileus virginianus). We collected fecal samples and conducted high-throughput sequencing of the 16S rRNA gene. Using GPS data, we estimated core (50%) and home range (95%) sizes and calculated proportional use for several important habitat types. We generated metrics related to gut diversity and key bacterial ratios. We hypothesize that larger Firmicutes to Bacteroides ratios confer body size or fat advantages that allow for larger home ranges, and that relationships between gut diversity and disproportionate habitat use is stronger in mountain goats due to their restricted niche relative to white-tailed deer. Firmicutes to Bacteroides ratios were positively correlated with core range area in both species. Mountain goats exhibited a negative relationship between gut diversity and use of two key habitat types (treed areas and escape terrain), whereas no relationships were detected in white-tailed deer. This is the first study to relate core range size to the gut microbiome in wild ungulates and is an important proof of concept that advances the information that can be gleaned from non-invasive sampling. Competing Interest Statement The authors have declared no competing interest. Footnotes * Revisions and added analyses. |
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| AbstractList | The gut microbiome of animals varies by age, diet, and habitat, and directly influences individual health. Similarly, variation in an individual’s home range can lead to differences in feeding strategies and fitness. Ungulates (hooved mammals) exhibit species-specific microbiomes and habitat use patterns: here, we combined gut microbiome and movement data to assess relationships between space use and the gut microbiome in a specialist and a generalist ungulate. We captured and GPS radiocollared 24 mountain goats (Oreamnos americanus) and 34 white-tailed deer (Odocoileus virginianus). We collected fecal samples and conducted high-throughput sequencing of the 16S rRNA gene. Using GPS data, we estimated core (50%) and home range (95%) sizes and calculated proportional use for several important habitat types. We generated metrics related to gut diversity and key bacterial ratios. We hypothesize that larger Firmicutes to Bacteroides ratios confer body size or fat advantages that allow for larger home ranges, and that relationships between gut diversity and disproportionate habitat use is stronger in mountain goats due to their restricted niche relative to white-tailed deer. Firmicutes to Bacteroides ratios were positively correlated with core range area in both species. Mountain goats exhibited a negative relationship between gut diversity and use of two key habitat types (treed areas and escape terrain), whereas no relationships were detected in white-tailed deer. This is the first study to relate core range size to the gut microbiome in wild ungulates and is an important proof of concept that advances the information that can be gleaned from non-invasive sampling. Abstract The gut microbiome of animals varies by age, diet, and habitat, and directly influences individual health. Similarly, variation in an individual’s home range can lead to differences in feeding strategies and fitness. Ungulates (hooved mammals) exhibit species-specific microbiomes and habitat use patterns: here, we combined gut microbiome and movement data to assess relationships between space use and the gut microbiome in a specialist and a generalist ungulate. We captured and GPS radiocollared 24 mountain goats (Oreamnos americanus) and 34 white-tailed deer (Odocoileus virginianus). We collected fecal samples and conducted high-throughput sequencing of the 16S rRNA gene. Using GPS data, we estimated core (50%) and home range (95%) sizes and calculated proportional use for several important habitat types. We generated metrics related to gut diversity and key bacterial ratios. We hypothesize that larger Firmicutes to Bacteroides ratios confer body size or fat advantages that allow for larger home ranges, and that relationships between gut diversity and disproportionate habitat use is stronger in mountain goats due to their restricted niche relative to white-tailed deer. Firmicutes to Bacteroides ratios were positively correlated with core range area in both species. Mountain goats exhibited a negative relationship between gut diversity and use of two key habitat types (treed areas and escape terrain), whereas no relationships were detected in white-tailed deer. This is the first study to relate core range size to the gut microbiome in wild ungulates and is an important proof of concept that advances the information that can be gleaned from non-invasive sampling. Competing Interest Statement The authors have declared no competing interest. Footnotes * Revisions and added analyses. |
| Author | Patterson, Br Kd Kriss Wolf, Jf Munro, K Macaulay, Km Shafer, Aba |
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| Cites_doi | 10.1016/j.ddmod.2019.08.012 10.1644/1545-1542(2002)083<0218:gbhmfm>2.0.co;2 10.1890/08-2090.1 10.1890/06-0957.1 10.1093/icb/icx020 10.1186/s12866-017-1027-1 10.1186/s13059-018-1450-0 10.2307/1939864 10.1890/08-2034.1 10.1371/journal.pone.0220926 10.1128/AEM.01837-16 10.1016/j.nut.2017.12.005 10.1038/s41586-018-0634-9 10.1002/ece3.5768 10.1097/MOG.0000000000000139 10.1126/science.1155725 10.15406/jdvar.2016.03.00094 10.1097/MOG.0b013e328333d751 10.1007/s00040-018-0624-9 10.1371/journal.pone.0176573 10.1111/1462-2920.13006 10.7717/peerj.7645 10.1139/z89-335 10.1139/cjz-2012-0297 10.1002/ecs2.2815 10.2193/2006-300 10.1890/11-0815.1 10.1186/s40168-020-00817-w 10.2193/0022-541x(2006)70[1556:alasao]2.0.co;2 10.1139/z09-009 10.1126/science.aad2602 10.1177/0884533611436116 10.1016/j.actao.2018.09.001 10.1111/j.1654-1103.2002.tb02087.x 10.1371/journal.pbio.2000862 10.1007/BF00378733 10.1038/s41396-019-0535-4 10.2307/3802878 10.1371/journal.pbio.1002226 10.1101/2020.02.09.940981 10.1073/pnas.1905666116 10.3389/fcimb.2012.00104 10.1139/z00-117 10.1139/Z07-080 10.1038/nrn3346 10.1152/physrev.00018.2018 10.1038/s41598-020-61192-y 10.1139/facets-2019-0019 10.1002/jwmg.1028 10.2307/3801337 10.1093/femsec/fiz095 10.1038/ismej.2016.62 10.1126/science.1237439 10.1038/ismej.2011.41 10.1007/s10592-020-01274-6 |
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| Keywords | Mountain goat Habitat use GPS tracking Core range White-tailed deer Genomics |
| Language | English |
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| References | Massé, Côté (2020.08.04.236638v4.57) 2013; 91 Zhang, Ju, Zuo (2020.08.04.236638v4.3) 2018; 51-52 Hebblewhite, Merrill (2020.08.04.236638v4.70) 2009; 90 (2020.08.04.236638v4.44) 2010 Festa-Bianchet, Côté (2020.08.04.236638v4.22) 2008 Boylen, Rideout, Dillon, Bokulich, Abnet, Al-Ghalith (2020.08.04.236638v4.41) 2019; 37 Cryan, Dinan (2020.08.04.236638v4.17) 2012; 13 Krajmalnik-Brown, Ilhan, Kang, DiBaise (2020.08.04.236638v4.62) 2012; 27 Williams, Caraballo-Rodríguez, Allaband, Zarrinpar, Knight, Gauglitz (2020.08.04.236638v4.7) 2019; 28 Van Deelen, Campa, Hamady, Haulfer (2020.08.04.236638v4.31) 1998; 62 Wolf, Kriss, Macaulay, Shafer (2020.08.04.236638v4.37) 2020; 21 Ottman, Smidt, de Vos, Belzer (2020.08.04.236638v4.63) 2012; 2 McPeek (2020.08.04.236638v4.75) 1996; 148 Shafer, Northrup, White, Boyce, Côté, Coltman (2020.08.04.236638v4.55) 2012; 93 De Tarso, Oliviera, Bastos Alfonso (2020.08.04.236638v4.20) 2016; 3 Bordenstein, Theis (2020.08.04.236638v4.33) 2015; 13 Brown, Doucet (2020.08.04.236638v4.68) 1991; 55 Shreiner, Kao, Young (2020.08.04.236638v4.4) 2015; 31 Coyte, Schluter, Foster (2020.08.04.236638v4.6) 2015; 350 Mao, Kim, Zhou, Hu, Zhong, Chang (2020.08.04.236638v4.10) 2020; 8 Schretter, Vielmetter, Bartos, Marka, Marka, Argade (2020.08.04.236638v4.14) 2018; 563 Blake, Karr (2020.08.04.236638v4.76) 1987; 68 Mccune, Keon (2020.08.04.236638v4.56) 2002; 13 Cryan, O’Riordan, Cowan, Sandhu, Bastiaanssen, Boehme (2020.08.04.236638v4.78) 2019; 99 (2020.08.04.236638v4.58) 2015 Hamel, Côté (2020.08.04.236638v4.71) 2007; 85 Tinker, Ottesen (2020.08.04.236638v4.8) 2016; 82 Hewitt (2020.08.04.236638v4.29) 2011 Jameson, Réale, Kembel (2020.08.04.236638v4.64) 2020 Delgiudice, Fieberg, Riggs, Powell, Pan (2020.08.04.236638v4.59) 2006; 70 Richard, Côté (2020.08.04.236638v4.45) 2016; 80 Munro (2020.08.04.236638v4.38) 2020 Festa-bianchet, Côté (2020.08.04.236638v4.27) 2003 Grund, McAninch, Wiggers (2020.08.04.236638v4.30) 2002; 66 Poole, Stuart-Smith, Teske (2020.08.04.236638v4.24) 2009; 87 Poole, Heard (2020.08.04.236638v4.23) 2003; 117 Murray, Lankau, Kidd, Welch, Ellison (2020.08.04.236638v4.12) 2020; 15 Lynch (2020.08.04.236638v4.65) 1973; 13 Sawyer, Kauffman, Nielson, Horne (2020.08.04.236638v4.49) 2009; 19 Berry, Shipley, Long, Loggers (2020.08.04.236638v4.32) 2019; 10 Kruger Ben Shabat, Sasson, Doron-Faigenboim, Durman, Yaacoby, Berg Miller (2020.08.04.236638v4.21) 2016; 10 White (2020.08.04.236638v4.26) 2006; 15 Bird, Prewer, Kutz, Leclerc, Vilaça, Kyle (2020.08.04.236638v4.67) 2019; 9 Haworth, White, Côté, Shafer (2020.08.04.236638v4.39) 2019; 95 Pielou (2020.08.04.236638v4.42) 1966; 13 Devaynes, Antunes, Bedford, Ashton (2020.08.04.236638v4.74) 2018; 92 Tap, Furet, Bensaada, Philippe, Roth, Rabot (2020.08.04.236638v4.73) 2015; 17 Gross, Mc, Reed, Reich (2020.08.04.236638v4.69) 2002; 83 Johnson (2020.08.04.236638v4.54) 1980; 61 Bivand, Keitt, Pebesma, Sumner, Hijmans, Rouault, Rundel (2020.08.04.236638v4.53) 2019 Ley (2020.08.04.236638v4.35) 2010; 26 Lesage, Crête, Huot, Dumont, Ouellet (2020.08.04.236638v4.50) 2000; 78 Leitão-Gonçalves, Carvalho-Santos, Francisco, Fioreze, Anjos, Baltazar (2020.08.04.236638v4.11) 2017; 15 Rodewald, Vitz (2020.08.04.236638v4.77) 2005; 69 Webb, Hewitt, Hellickson (2020.08.04.236638v4.51) 2007; 71 Merritt, Zegers (2020.08.04.236638v4.66) 1991; 69 Dearing, Kohl (2020.08.04.236638v4.18) 2017; 57 Kartzinel, Hsing, Musili, Brown, Pringle (2020.08.04.236638v4.79) 2019; 116 Arnolds, Lozupone (2020.08.04.236638v4.1) 2016; 89 Faith, Guruge, Charbonneau, Subramanian, Seedorf, Goodman (2020.08.04.236638v4.5) 2013; 5 Cadsand (2020.08.04.236638v4.43) 2012 Horne, Garton, Krone, Lewis (2020.08.04.236638v4.48) 2007; 88 Nielson, Sawyer, McDonald (2020.08.04.236638v4.47) 2015 Herlemann, Labrenz, Ju, Bertilsson, Waniek, Andersson (2020.08.04.236638v4.40) 2011; 5 Hölzenbein, Schwede (2020.08.04.236638v4.46) 1989; 53 Callahan, McMurdie, Rosen, Han, Johnson, Holmes (2020.08.04.236638v4.61) 2016; 13 Hofmann (2020.08.04.236638v4.28) 1989; 78 Jones, Fruciano, Marchant, Hildebrand, Forslund, Bork (2020.08.04.236638v4.15) 2018; 65 Koliada, Syzenko, Moseiko, Budovska, Puchkov, Perederiy (2020.08.04.236638v4.19) 2017; 17 Esposti, Romero (2020.08.04.236638v4.9) 2017; 12 Marrotte, Bowman, Morin (2020.08.04.236638v4.36) 2020; 5 Dailey, Hobbs (2020.08.04.236638v4.72) 1989; 67 Taylor, Wall, Kulis (2020.08.04.236638v4.25) 2014; 15 De Angelis, Ferrocino, Calabrese, De Filippis, Cavallo, Siragusa (2020.08.04.236638v4.2) 2020; 10 Kuhn, Wing, Weston, Williams, Keefer, Engelhardt, Hunt (2020.08.04.236638v4.60) 2020 San Juan, Hendershot, Daily, Fukami (2020.08.04.236638v4.13) 2019; 14 Ley, Hamady, Lozupone, Turnbaugh, Ramey, Bircher (2020.08.04.236638v4.16) 2008; 320 Ma, Xu, Liu, Xu, Hu, Zhao (2020.08.04.236638v4.34) 2019; 7 Kilpatrick, Stober (2020.08.04.236638v4.52) 2002; 30 |
| References_xml | – year: 2019 ident: 2020.08.04.236638v4.53 article-title: Rgdal: Bindings for the ‘geospatial’ data abstraction library publication-title: R package version 1.4-8 – volume: 28 start-page: 105 year: 2019 end-page: 15 ident: 2020.08.04.236638v4.7 article-title: Wildlife-microbiome interactions and disease: exploring opportunities for disease mitigation across ecological scales publication-title: Drug Discov. Today Dis. Model doi: 10.1016/j.ddmod.2019.08.012 – volume: 117 start-page: 565 year: 2003 end-page: 576 ident: 2020.08.04.236638v4.23 article-title: Seasonal habitat use and movements of mountain goats, Oreamnos americanus, in east-central British Columbia publication-title: Can. Field-Naturalist – volume: 83 start-page: 218 year: 2002 end-page: 28 ident: 2020.08.04.236638v4.69 article-title: GIS-based habitat models for mountain goats publication-title: J. Mammal doi: 10.1644/1545-1542(2002)083<0218:gbhmfm>2.0.co;2 – volume: 90 start-page: 3445 year: 2009 end-page: 3454 ident: 2020.08.04.236638v4.70 article-title: Trade-offs between predation risk and forage differ between migrant strategies in a migratory ungulate publication-title: Ecology doi: 10.1890/08-2090.1 – volume: 88 start-page: 2354 year: 2007 end-page: 2363 ident: 2020.08.04.236638v4.48 article-title: Analyzing animal movements using Brownian bridges publication-title: Ecology doi: 10.1890/06-0957.1 – volume: 57 start-page: 723 year: 2017 end-page: 731 ident: 2020.08.04.236638v4.18 article-title: Beyond fermentation: Other important services provided to endothermic herbivores by their gut microbiota publication-title: Integr. Comp. Biol doi: 10.1093/icb/icx020 – volume: 17 start-page: 4 year: 2017 end-page: 9 ident: 2020.08.04.236638v4.19 article-title: Association between body mass index and Firmicutes/Bacteroidetes ratio in an adult Ukrainian population publication-title: BMC Microbiol doi: 10.1186/s12866-017-1027-1 – volume: 37 start-page: 852 year: 2019 end-page: 857 ident: 2020.08.04.236638v4.41 article-title: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 publication-title: Nat. Biotechnol doi: 10.1186/s13059-018-1450-0 – volume: 68 start-page: 1724 year: 1987 end-page: 1734 ident: 2020.08.04.236638v4.76 article-title: Breeding birds of isolated woodlots: area and habitat relationships publication-title: Ecol. Soc.Am doi: 10.2307/1939864 – year: 2012 ident: 2020.08.04.236638v4.43 article-title: Responses of mountain goats to heliskiing activity: movements and resource selection. [MSc dissertation] – volume: 19 start-page: 2016 year: 2009 end-page: 2025 ident: 2020.08.04.236638v4.49 article-title: Identifying and prioritizing ungulate migration routes for landscape-level conservation publication-title: Ecol. Appl doi: 10.1890/08-2034.1 – volume: 15 start-page: e0220926 year: 2020 ident: 2020.08.04.236638v4.12 article-title: Gut microbiome shifts with urbanization and potentially facilitates a zoonotic pathogen in a wading bird publication-title: PLoS One doi: 10.1371/journal.pone.0220926 – volume: 82 start-page: 6603 year: 2016 end-page: 6610 ident: 2020.08.04.236638v4.8 article-title: The core gut microbiome of the American cockroach, Periplaneta americana, is stable and resilient to dietary shifts publication-title: Appl. Environ. Microbiol doi: 10.1128/AEM.01837-16 – volume: 51-52 start-page: 80 year: 2018 end-page: 85 ident: 2020.08.04.236638v4.3 article-title: Time for food: The impact of diet on gut microbiota and human health publication-title: Nutrition doi: 10.1016/j.nut.2017.12.005 – volume: 563 start-page: 402 year: 2018 end-page: 406 ident: 2020.08.04.236638v4.14 article-title: A gut microbial factor modulates locomotor behaviour in Drosophila publication-title: Nature doi: 10.1038/s41586-018-0634-9 – year: 2003 ident: 2020.08.04.236638v4.27 publication-title: In Wild Mammals of North America: Biology, Management, Conservation – volume: 30 start-page: 760 year: 2002 end-page: 766 ident: 2020.08.04.236638v4.52 article-title: Effects of temporary bait sites on movements of suburban white-tailed deer publication-title: Wildl. Soc. Bull – volume: 9 start-page: 13202 year: 2019 end-page: 13217 ident: 2020.08.04.236638v4.67 article-title: Geography, seasonality, and host-associated population structure influence the fecal microbiome of a genetically depauparate Arctic mammal publication-title: Ecol. Evol doi: 10.1002/ece3.5768 – year: 2010 ident: 2020.08.04.236638v4.44 article-title: Conservation Status Report publication-title: BC Conservation Data Centre – volume: 31 start-page: 69 year: 2015 end-page: 75 ident: 2020.08.04.236638v4.4 article-title: The gut microbiome in health and in disease publication-title: Curr. Opin. Gastroenterol doi: 10.1097/MOG.0000000000000139 – volume: 320 start-page: 1647 year: 2008 end-page: 1651 ident: 2020.08.04.236638v4.16 article-title: Evolution of mammals and their gut microbes publication-title: Science doi: 10.1126/science.1155725 – volume: 3 start-page: 1 year: 2016 end-page: 7 ident: 2020.08.04.236638v4.20 article-title: Ruminants as part of the global food system: How evolutionary adaptations and diversity of the digestive system brought them to the future publication-title: J. Dairy, Vet. Anim. Res doi: 10.15406/jdvar.2016.03.00094 – volume: 26 start-page: 5 year: 2010 end-page: 11 ident: 2020.08.04.236638v4.35 article-title: Obesity and the human microbiome publication-title: Curr. Opin. Gastroenterol doi: 10.1097/MOG.0b013e328333d751 – volume: 62 start-page: 205 year: 1998 end-page: 213 ident: 2020.08.04.236638v4.31 article-title: Migration and seasonal range dynamics of deer using adjacent deeryards in northern Michigan publication-title: J. Wildl. Manage – volume: 65 start-page: 419 year: 2018 end-page: 29 ident: 2020.08.04.236638v4.15 article-title: The gut microbiome is associated with behavioural task in honey bees publication-title: Insectes Soc doi: 10.1007/s00040-018-0624-9 – volume: 89 start-page: 389 year: 2016 end-page: 95 ident: 2020.08.04.236638v4.1 article-title: Striking a balance with help from our little friends – how the gut microbiota contributes to immune homeostasis publication-title: Yale J. Biol. Med doi: 10.1371/journal.pone.0176573 – volume: 17 start-page: 4954 year: 2015 end-page: 4964 ident: 2020.08.04.236638v4.73 article-title: Gut microbiota richness promotes its stability upon increased dietary fibre intake in healthy adults publication-title: Environ. Microbiol doi: 10.1111/1462-2920.13006 – volume: 7 start-page: e7645 year: 2019 ident: 2020.08.04.236638v4.34 article-title: Yak rumen microbial diversity at different forage growth stages of an alpine meadow on the Qinghai-Tibet Plateau publication-title: PeerJ doi: 10.7717/peerj.7645 – volume: 67 start-page: 2368 year: 1989 end-page: 2375 ident: 2020.08.04.236638v4.72 article-title: Travel in alpine terrain: energy expenditures for locomotion by mountain goats and bighorn sheep publication-title: Can. J. Zool doi: 10.1139/z89-335 – volume: 15 start-page: 141 year: 2014 end-page: 158 ident: 2020.08.04.236638v4.25 article-title: Habitat selection by mountain goats in south coastal British Columbia Habitat Selection by Mountain Goats in South Coastal British Columbia publication-title: Bienn. Symp. North. Wild Sheep Goat Counc – volume: 15 start-page: 183 year: 2006 end-page: 194 ident: 2020.08.04.236638v4.26 article-title: Seasonal and Sex-specific Variation in Terrain Use and Movement Patterns of Mountain Goats in Southeastern Alaska publication-title: Bienn. Symp. North. Wild Sheep Goat Counc – volume: 91 start-page: 252 year: 2013 end-page: 263 ident: 2020.08.04.236638v4.57 article-title: Spatiotemporal variations in resources affect activity and movement publication-title: Can. J. Zool doi: 10.1139/cjz-2012-0297 – volume: 10 start-page: e02815 year: 2019 ident: 2020.08.04.236638v4.32 article-title: Differences in dietary niche and foraging behavior of sympatric mule and white-tailed deer publication-title: Ecosphere doi: 10.1002/ecs2.2815 – volume: 71 start-page: 1507 year: 2007 end-page: 1512 ident: 2020.08.04.236638v4.51 article-title: Scale of management for mature male white-tailed deer as influenced by home range and movements publication-title: J. Wildl. Manage doi: 10.2193/2006-300 – volume: 93 start-page: 1317 year: 2012 end-page: 1329 ident: 2020.08.04.236638v4.55 article-title: Habitat selection predicts genetic relatedness in an alpine ungulate publication-title: Ecology doi: 10.1890/11-0815.1 – volume: 69 start-page: 681 year: 2005 end-page: 688 ident: 2020.08.04.236638v4.77 article-title: Edge and area-sensitivity of shrubland birds publication-title: J. Wildl. Manage – volume: 8 start-page: 1 year: 2020 end-page: 14 ident: 2020.08.04.236638v4.10 article-title: Genetic and metabolic links between the murine microbiome and memory publication-title: Microbiome doi: 10.1186/s40168-020-00817-w – volume: 70 start-page: 1556 year: 2006 end-page: 1568 ident: 2020.08.04.236638v4.59 article-title: A long-term age-specific survival analysis of female white-tailed deer publication-title: J. Wildl. Manage doi: 10.2193/0022-541x(2006)70[1556:alasao]2.0.co;2 – volume: 87 start-page: 273 year: 2009 end-page: 283 ident: 2020.08.04.236638v4.24 article-title: Wintering strategies by mountain goats in interior mountains publication-title: Can. J. Zool doi: 10.1139/z09-009 – volume: 350 start-page: 663 year: 2015 end-page: 666 ident: 2020.08.04.236638v4.6 article-title: The ecology of the microbiome: Networks, competition, and stability publication-title: Science doi: 10.1126/science.aad2602 – volume: 27 start-page: 201 year: 2012 end-page: 214 ident: 2020.08.04.236638v4.62 article-title: Effects of gut microbes on nutrient absorption and energy regulation publication-title: Nutr. Clin. Pract doi: 10.1177/0884533611436116 – volume: 12 start-page: e0176573 year: 2017 ident: 2020.08.04.236638v4.9 article-title: The functional microbiome of arthropods publication-title: PLoS One doi: 10.1371/journal.pone.0176573 – volume: 55 start-page: 361 year: 1991 end-page: 376 ident: 2020.08.04.236638v4.68 article-title: Temporal changes in winter diet selection by white-tailed deer in a northern deer yard publication-title: J. Wildl. Manage – volume: 92 start-page: 123 year: 2018 end-page: 30 ident: 2020.08.04.236638v4.74 article-title: Bacterial species richness at three stages of the breeding season in Cyanistes caeruleus (blue tit) publication-title: Acta Oecologica doi: 10.1016/j.actao.2018.09.001 – volume: 13 start-page: 603 year: 2002 end-page: 606 ident: 2020.08.04.236638v4.56 article-title: Equations for potential annual direct incident radiation and heat Lload publication-title: J. Veg. Sci doi: 10.1111/j.1654-1103.2002.tb02087.x – year: 2020 ident: 2020.08.04.236638v4.60 article-title: Caret: Classification and regression training. R package version 6.0-86. [Online] – volume: 15 start-page: 1 year: 2017 end-page: 29 ident: 2020.08.04.236638v4.11 article-title: Commensal bacteria and essential amino acids control food choice behavior and reproduction publication-title: PLoS Biol doi: 10.1371/journal.pbio.2000862 – volume: 78 start-page: 443 year: 1989 end-page: 457 ident: 2020.08.04.236638v4.28 article-title: Evolutionary steps of ecophysiological adaptation and diversification of ruminants: a comparative view of their digestive system publication-title: Oecologia doi: 10.1007/BF00378733 – year: 2011 ident: 2020.08.04.236638v4.29 – year: 2015 ident: 2020.08.04.236638v4.47 article-title: BBMM: Brownian Bridge Movement Model. R package version 3.0. [Online] – volume: 14 start-page: 318 year: 2019 end-page: 321 ident: 2020.08.04.236638v4.13 article-title: Land-use change has host-specific influences on avian gut microbiomes publication-title: ISME J doi: 10.1038/s41396-019-0535-4 – volume: 66 start-page: 123 year: 2002 end-page: 130 ident: 2020.08.04.236638v4.30 article-title: Seasonal movements and habitat use of female White-tailed deer associated with an urban park publication-title: J. Wildl. Manage doi: 10.2307/3802878 – year: 2020 ident: 2020.08.04.236638v4.38 article-title: White-tailed fear: The human-created landscape of fear and its effect on white-tailed deer (Odocoileus virginianus) behaviour. [PhD dissertation] – volume: 69 start-page: 2771 year: 1991 end-page: 7 ident: 2020.08.04.236638v4.66 article-title: Seasonal thermogenesis and body-mass dynamics of Clethrionomys gapperi publication-title: Can. J. Zool – volume: 13 start-page: e1002226 year: 2015 ident: 2020.08.04.236638v4.33 article-title: Host biology in light of the microbiome: ten principles of holobionts and hologenomes publication-title: PLoS Biol doi: 10.1371/journal.pbio.1002226 – year: 2015 ident: 2020.08.04.236638v4.58 article-title: Southern Ontario Land Resource Information System (SOLRIS) Version 2.0: Data Specifications – start-page: 1 year: 2020 end-page: 26 ident: 2020.08.04.236638v4.64 article-title: Gut microbiome modulates behaviour and life history in two wild rodents publication-title: bioRxiv doi: 10.1101/2020.02.09.940981 – volume: 116 start-page: 23588 year: 2019 end-page: 23593 ident: 2020.08.04.236638v4.79 article-title: Covariation of diet and gut microbiome in African megafauna publication-title: Proc. Natl. Acad. Sci. U. S. A doi: 10.1073/pnas.1905666116 – volume: 2 start-page: 1 year: 2012 end-page: 11 ident: 2020.08.04.236638v4.63 article-title: The function of our microbiota: who is out there and what do they do? publication-title: Front. Cell. Infect. Microbiol doi: 10.3389/fcimb.2012.00104 – volume: 78 start-page: 1930 year: 2000 end-page: 1940 ident: 2020.08.04.236638v4.50 article-title: Seasonal home range size and philopatry in two northern white-tailed deer populations publication-title: Can. J. Zool doi: 10.1139/z00-117 – volume: 85 start-page: 933 year: 2007 end-page: 943 ident: 2020.08.04.236638v4.71 article-title: Habitat use patterns in relation to escape terrain: Are alpine ungulate females trading off better foraging sites for safety? publication-title: Can. J. Zool doi: 10.1139/Z07-080 – volume: 13 start-page: 701 year: 2012 end-page: 712 ident: 2020.08.04.236638v4.17 article-title: Mind-altering microorganisms: The impact of the gut microbiota on brain and behaviour publication-title: Nat. Rev. Neurosci doi: 10.1038/nrn3346 – year: 2008 ident: 2020.08.04.236638v4.22 – volume: 13 start-page: 581 year: 2016 end-page: 583 ident: 2020.08.04.236638v4.61 article-title: DADA2: High-resolution sample inference from Illumina amplicon data publication-title: Nat. Methods – volume: 99 start-page: 1877 year: 2019 end-page: 2013 ident: 2020.08.04.236638v4.78 article-title: The microbiota-gut-brain axis publication-title: Physiol. Rev doi: 10.1152/physrev.00018.2018 – volume: 10 start-page: 4247 year: 2020 ident: 2020.08.04.236638v4.2 article-title: Diet influences the functions of the human intestinal microbiome publication-title: Sci. Rep doi: 10.1038/s41598-020-61192-y – volume: 5 start-page: 503 year: 2020 end-page: 522 ident: 2020.08.04.236638v4.36 article-title: Spatial segregation and habitat partitioning of bobcat and Canada lynx publication-title: Facets doi: 10.1139/facets-2019-0019 – volume: 13 start-page: 131 year: 1966 end-page: 44 ident: 2020.08.04.236638v4.42 article-title: The measurement of diversity in different types of biological collections publication-title: J. Theor. Biol – volume: 148 start-page: S124 year: 1996 end-page: 38 ident: 2020.08.04.236638v4.75 article-title: Trade-offs, food web structure, and the coexistence of habitat specialists and generalists publication-title: Am. Nat – volume: 61 start-page: 65 year: 1980 end-page: 71 ident: 2020.08.04.236638v4.54 article-title: The comparison of usage and availability measurements for evaluating resource preference publication-title: Ecology – volume: 80 start-page: 387 year: 2016 end-page: 395 ident: 2020.08.04.236638v4.45 article-title: Space use analyses suggest avoidance of a ski area by mountain goats publication-title: J. Wildl. Manage doi: 10.1002/jwmg.1028 – volume: 53 start-page: 219 year: 1989 end-page: 223 ident: 2020.08.04.236638v4.46 article-title: Activity and movements of female white-tailed deer during the rut publication-title: J. Wildl. Manage doi: 10.2307/3801337 – volume: 13 start-page: 363 year: 1973 end-page: 376 ident: 2020.08.04.236638v4.65 article-title: Seasonal changes in thermogenesis, organ weights, and dody composition in the white-footed mouse, Peromyscus leucopus publication-title: Oecologia – volume: 95 start-page: 1 year: 2019 end-page: 12 ident: 2020.08.04.236638v4.39 article-title: Space, time and captivity: Quantifying the factors influencing the fecal microbiome of an alpine ungulate publication-title: FEMS Microbiol. Ecol doi: 10.1093/femsec/fiz095 – volume: 10 start-page: 2958 year: 2016 end-page: 2972 ident: 2020.08.04.236638v4.21 article-title: Specific microbiome-dependent mechanisms underlie the energy harvest efficiency of ruminants publication-title: ISME J doi: 10.1038/ismej.2016.62 – volume: 5 start-page: 1237439 year: 2013 ident: 2020.08.04.236638v4.5 article-title: The long-term stability of the human gut microbiota publication-title: Science doi: 10.1126/science.1237439 – volume: 5 start-page: 1571 year: 2011 end-page: 1579 ident: 2020.08.04.236638v4.40 article-title: Transitions in bacterial communities along the 2000 km salinity gradient of the Baltic Sea publication-title: Int. Soc. Microb. Ecol doi: 10.1038/ismej.2011.41 – volume: 21 start-page: 613 year: 2020 end-page: 23 ident: 2020.08.04.236638v4.37 article-title: Panmictic population genetic structure of northern British Columbia mountain goats (Oreamnos americanus) has implications for harvest management publication-title: Conserv. Genet doi: 10.1007/s10592-020-01274-6 |
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| Snippet | Abstract The gut microbiome of animals varies by age, diet, and habitat, and directly influences individual health. Similarly, variation in an individual’s... The gut microbiome of animals varies by age, diet, and habitat, and directly influences individual health. Similarly, variation in an individual’s home range... |
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| SubjectTerms | Age Bacteroides Body size Deer Fecal microflora Feces Feeding behavior Firmicutes Fitness Habitat utilization Habitats Home range Intestinal microflora Microbiomes Molecular Biology Next-generation sequencing Niches Odocoileus virginianus Oreamnos Reproductive behavior Reproductive status rRNA 16S Ungulates |
| Title | Gut microbiome composition predicts summer core range size in a generalist and specialist ungulate |
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