Geographical genetics

Population genetics has made great strides in applying statistical analysis and mathematical modeling to understand how genes mutate and spread through populations over time. But real populations also live in space. Streams, mountains, and other geographic features often divide populations, limit mi...

Ausführliche Beschreibung

Gespeichert in:
Bibliographische Detailangaben
1. Verfasser: Epperson, Bryan K
Format: E-Book Buch
Sprache:Englisch
Veröffentlicht: Princeton, N.J Princeton University Press 2003
Ausgabe:1
Schriftenreihe:Monographs in Population Biology
Schlagworte:
Accuracy and precision
Allele
Allele frequency
Autocorrelation
Biological Sciences
Biology
Chi-squared test
Coefficient of relationship
Correlation and dependence
Correlogram
Demic diffusion
Directional selection
Dummy variable (statistics)
Effective population size
Errors and residuals
Estimation
Estimator
Expected value
F-test
Fixation index
Founder effect
Gene flow
Genetic distance
Genetic diversity
Genetic drift
Genetic structure
Genetic variation
Genotype
Haplotype
Identity by descent
Inbreeding
Inference
Isolation by distance
Joint probability distribution
Kriging
Least squares
Life Sciences
Linkage disequilibrium
Mantel test
Medical geography
Moran's I
Mutation rate
Normal distribution
Null hypothesis
Outbreeding depression
Overdominance
Population genetics
Population geography
Population size
Porosity
Probability
Probability distribution
Quadrat
Random field
Randomization
Result
Sampling (statistics)
Sampling error
SCIENCE
SCIENCE / Life Sciences / Biology
Small population size
Spatial analysis
Spatial correlation
Spatial distribution
Spatial scale
Standard deviation
STAR model
Stationary process
Statistic
Statistical power
Statistical significance
Statistics
Stochastic
Stochastic process
Test statistic
Variance
Weighted arithmetic mean
Outbreeding depression
Genetic variation
Spatial correlation
Identity by descent
Errors and residuals
Genetic distance
Stochastic
Stochastic process
Founder effect
Population genetics
Result
Random field
Sampling (statistics)
Mantel test
Moran's I
Inbreeding
F-test
Fixation index
Accuracy and precision
Chi-squared test
Haplotype
Sampling error
Dummy variable (statistics)
Genetic structure
STAR model
Estimator
Estimation
Spatial analysis
Genotype
Inference
Kriging
Statistical significance
Expected value
Gene flow
Spatial distribution
Normal distribution
Least squares
Population size
Mutation rate
Effective population size
Joint probability distribution
Demic diffusion
Linkage disequilibrium
Probability distribution
Spatial scale
Variance
Overdominance
Weighted arithmetic mean
Null hypothesis
Randomization
Statistic
Directional selection
Standard deviation
Stationary process
Quadrat
Correlation and dependence
Genetic drift
Small population size
Test statistic
Probability
Genetic diversity
Correlogram
Statistics
Coefficient of relationship
Allele
Isolation by distance
Allele frequency
Porosity
Autocorrelation
Statistical power
ISBN:9780691086682, 0691086699, 0691086680, 9780691086699, 9781400835621, 1400835623
Online-Zugang:Volltext
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Inhaltsangabe:
  • Geographical genetics -- Contents -- Preface -- Chapter 1: Space-Time Population Genetics -- Chapter 2: Geographical Patterns Observed in Nature -- Chapter 3: Ancient Events in Spatial-Temporal Processes -- Chapter 4: Spatial and Space-Time Statistics -- Chapter 5: Theory of Genetics as Stochastic Spatial-Temporal Processes -- Chapter 6: Synthesis: Tying Spatial Patterns among Populations to Space-Time Processes -- Chapter 7: Spatial Patterns Observed within Populations -- Chapter 8: Statistical Methods for Spatial Structure within Populations -- Chapter 9: Theory of Spatial Structure within Populations -- Chapter 10. Emerging Study -- Literature Cited -- Index
  • Front Matter Table of Contents Preface CHAPTER 1: Space–Time Population Genetics CHAPTER 2: Geographical Patterns Observed in Nature CHAPTER 3: Ancient Events in Spatial–Temporal Processes CHAPTER 4: Spatial and Space–Time Statistics CHAPTER 5: Theory of Genetics as Stochastic Spatial–Temporal Processes CHAPTER 6: Synthesis: CHAPTER 7: Spatial Patterns Observed within Populations CHAPTER 8: Statistical Methods for Spatial Structure within Populations CHAPTER 9: Theory of Spatial Structure within Populations CHAPTER 10: Emerging Study Literature Cited Index Back Matter
  • Index Literature Cited 10. Emerging Study 9. Theory of Spatial Structure within Populations 8. Statistical Methods for Spatial Structure within Populations 7. Spatial Patterns Observed within Populations 6. Synthesis: Tying Spatial Patterns among Populations to Space–Time Processes 5. Theory of Genetics as Stochastic Spatial–Temporal Processes 4. Spatial and Space–Time Statistics 3. Ancient Events in Spatial–Temporal Processes 2. Geographical Patterns Observed in Nature 1. Space–Time Population Genetics Preface Contents Title Page, Copyright Cover
  • Cover -- Title -- Copyright -- Contents -- Preface -- 1. Space-Time Population Genetics -- 2. Geographical Patterns Observed in Nature -- Standard Patterns of Genetic Isolation by Distance -- Directional Patterns -- Complex Paths of Migration -- Other Complexities of Migration Processes -- Effects of Temporal Changes on Spatial Patterns -- Spatial Patterns Caused by Selection -- Partition of Genetic Variation -- 3. Ancient Events in Spatial-Temporal Processes -- Out of Africa -- Patterns Caused by More Recent Expansions of Human Populations -- Patterns in Other Species -- 4. Spatial and Space-Time Statistics -- Spatial Autocorrelation Statistics -- Moran's I Statistic -- Correlograms -- Mantel Tests for Correlations of Genetic Distance with Geographic Distance -- Measures of Geographic Distances and Special Weighting Schemes -- Directional Autocorrelation and Special Weighting Schemes -- Spatial Statistics for Localized and Systemic Spatial Nonstationarity -- Multiple Genetic Characters -- Spatial Models and Statistical Analyses of Spatial Patterns -- Space-Time Analysis -- Measures of Kinship -- Measures of Overall Degree of Genetic Differentiation of a System -- Other Estimators -- 5. Theory of Genetics as Stochastic Spatial-Temporal Processes -- Spatial Probabilities of Identity by Descent -- Spatial and Space-Time Genetic Correlations -- Stochastic Migration -- Negatively Shared Stochastic Migration Effects -- Migration Matrices -- F Statistics and Wright's Island Model -- Space-Time Probabilities of Identity by Descent -- Space-Time Coalescence Probabilities -- Heterozygosity -- Mutation Models -- Clines -- Population Expansions -- Multilocus Processes -- Theoretical Dispersal Curves -- 6. Synthesis: Tying Spatial Patterns among Populations to Space-Time Processes -- 7. Spatial Patterns Observed within Populations
  • Standard Forms of Genetic Isolation by Distance -- Spatial Autocorrelation Observed within Populations-Moran's I Statistics -- Observed Join-Count Statistics -- Values for Other Measures -- Biparental Inbreeding Caused by Spatial Structure and Its Interaction with Inbreeding Depression and Selection -- The Roles of Demographic Factors in Spatial Structure -- Using Spatial Patterns to Detect Natural Selection -- 8. Statistical Methods for Spatial Structure within Populations -- Distribution Theory for Join Counts -- Moran's I Statistics in Terms of Join Counts -- Statistical Properties of Join-Count Statistics -- Statistical Properties of Moran's I Statistics for Quadrats -- Statistical Properties of Moran's I Statistics for Individual Genotypes -- Covariances of Moran's I for Converted Individual Genotypes of Multiallelic Loci -- Multiple-Locus Estimators -- F Statistics -- Measures of Kinship -- 9. Theory of Spatial Structure within Populations -- Genealogies and Identity by Descent -- Kinship and A Priori Covariance -- Relationship of Various Measures of Observable Spatial Covariances to the Theoretic Values -- Wright's View -- Mechanistic Models of Dispersal -- 10. Emerging Study -- Emerged Conclusions -- Future Studies -- Literature Cited -- Index -- A -- B -- C -- D -- E -- F -- G -- H -- I -- J -- K -- L -- M -- N -- O -- P -- Q -- R -- S -- T -- W -- Y
  • 2. Geographical Patterns Observed in Nature
  • 10. Emerging Study
  • 8. Statistical Methods for Spatial Structure within Populations
  • Index
  • 4. Spatial and Space–Time Statistics
  • -
  • 6. Synthesis: Tying Spatial Patterns among Populations to Space–Time Processes
  • Backmatter
  • 7. Spatial Patterns Observed within Populations
  • Contents
  • 1. Space–Time Population Genetics
  • Frontmatter --
  • 5. Theory of Genetics as Stochastic Spatial–Temporal Processes
  • Literature Cited
  • 9. Theory of Spatial Structure within Populations
  • Preface
  • 3. Ancient Events in Spatial–Temporal Processes