High-Performance Sorting-Based k-mer Counting in Distributed Memory with Flexible Hybrid Parallelism

In generating large quantities of DNA data, high-throughput sequencing technologies require advanced bioinformatics infrastructures for efficient data analysis. k-mer counting, the process of quantifying the frequency of fixed-length k DNA subsequences, is a fundamental step in various bioinformatic...

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Bibliographic Details

Published in:	arXiv.org
Main Authors:	Li, Yifan, Guidi, Giulia
Format:	Paper
Language:	English
Published:	Ithaca Cornell University Library, arXiv.org 10.07.2024
Subjects:	Assembly Bioinformatics Data analysis Deoxyribonucleic acid Distributed memory DNA Gene sequencing Genomes Nodes Pipelining (computers) Software
ISSN:	2331-8422
Online Access:	Get full text
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