jTraML: An Open Source Java API for TraML, the PSI Standard for Sharing SRM Transitions

We here present jTraML, a Java API for the Proteomics Standards Initiative TraML data standard. The library provides fully functional classes for all elements specified in the TraML XSD document, as well as convenient methods to construct controlled vocabulary-based instances required to define SRM...

Celý popis

Uloženo v:
Podrobná bibliografie
Vydáno v:Journal of proteome research Ročník 10; číslo 11; s. 5260 - 5263
Hlavní autoři: Helsens, Kenny, Brusniak, Mi-Youn, Deutsch, Eric, Moritz, Robert L, Martens, Lennart
Médium: Journal Article
Jazyk:angličtina
Vydáno: United States American Chemical Society 04.11.2011
Témata:
Automatic Data Processing - standards
Database Management Systems - standards
Mass Spectrometry - standards
Programming Languages
Reference Standards
Terminology as Topic
User-Computer Interface
standards
mass spectrometry
proteomics
selection reaction monitoring
bioinformatics
ISSN:1535-3893, 1535-3907, 1535-3907
On-line přístup:Získat plný text
Tagy: Přidat tag
Žádné tagy, Buďte první, kdo vytvoří štítek k tomuto záznamu!
Popis
Shrnutí:We here present jTraML, a Java API for the Proteomics Standards Initiative TraML data standard. The library provides fully functional classes for all elements specified in the TraML XSD document, as well as convenient methods to construct controlled vocabulary-based instances required to define SRM transitions. The use of jTraML is demonstrated via a two-way conversion tool between TraML documents and vendor specific files, facilitating the adoption process of this new community standard. The library is released as open source under the permissive Apache2 license and can be downloaded from http://jtraml.googlecode.com. TraML files can also be converted online at http://iomics.ugent.be/jtraml.
Bibliografie:ObjectType-Article-1
SourceType-Scholarly Journals-1
ObjectType-Feature-2
content type line 23
ISSN:1535-3893
1535-3907
1535-3907
DOI:10.1021/pr200664h